Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MYO3A 53904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 26432481 26432481 + Silent SNP A A G TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 TACTTTCCCTACTTGATGAAG 0.403 29 35 SPDYC 387778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 64939962 64939962 + Silent SNP A A G TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 AGATTTTTCCATGGGCCCTGG 0.562 56 99 MTNR1B 4544 hgsc.bcm.edu;broad.mit.edu 37 11 92714797 92714797 + Silent SNP T T C TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 CCATCGCCATTAACCGCTACT 0.607 6 63 EML5 161436 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 89093251 89093251 + Missense_Mutation SNP G G C TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 GCCCTTTTTTGCTAAGAAGAG 0.463 18 33 ARHGAP11A 9824 hgsc.bcm.edu;broad.mit.edu 37 15 32917835 32917835 + Splice_Site SNP G G C TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 AGTGTAGGAGGTAAGTGGCGG 0.408 9 105 CAPN15 6650 hgsc.bcm.edu;broad.mit.edu 37 16 598068 598068 + Silent SNP C C T TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 GCGTCCTGCCCGAGCGCCCGG 0.751 9 14 SF3B3 23450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 70594469 70594469 + Missense_Mutation SNP G G A TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 AAGCTCTTCCGAGTCCGAATG 0.522 5 93 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7579350 7579350 + Missense_Mutation SNP A A C TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 GAATGCAAGAAGCCCAGACGG 0.607 68 36 MFAP4 4239 hgsc.bcm.edu;broad.mit.edu 37 17 19290401 19290401 + Silent SNP G G A TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 TCTGTGGCCAGGGGCCTCTGG 0.597 14 19 GPATCH8 23131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 42483311 42483311 + Missense_Mutation SNP C C G TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 TTTCTTTGCTCTGCCAACTCA 0.368 11 85 PRKCA 5578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 64738870 64738870 + Missense_Mutation SNP G G A TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 AGATTATATCGCCCCAGAGGT 0.488 9 23 KLHL14 57565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 30322013 30322013 + Splice_Site SNP C C A TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 AGAGCGAATTCTTCACCCAAA 0.433 12 80 ZNF761 388561 hgsc.bcm.edu;broad.mit.edu 37 19 53958931 53958931 + RNA SNP C C G TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 GTGGCAAGACCTTTAGTCACA 0.408 15 165 ZMYM6 9204 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 35476495 35476495 + Missense_Mutation SNP C C T TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 AGCAGAGCCACGGATGGAGCT 0.547 9 83 SEC16B 89866 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 177909803 177909803 + Missense_Mutation SNP C C T TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 GTCTCCACTGCGTCTTTCTAA 0.562 29 32 NID1 4811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 236144995 236144995 + Missense_Mutation SNP G G A TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 GTCCAGCTTCGCCACTTCTAT 0.498 30 52 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 237754205 237754205 + Missense_Mutation SNP G G A TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 GTGCCCGATCGTGTTGACAAA 0.428 9 31 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 141607789 141607789 + Silent SNP G G A TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 TCACAGTAACGTCATCAATAT 0.368 12 60 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 ATAAGCATGACGACCTATGAT 0.393 32 59 SNX18 112574 hgsc.bcm.edu;broad.mit.edu 37 5 53815358 53815358 + Missense_Mutation SNP C C G TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 AGCGCTGTATCAGGGGCATCT 0.557 8 140 NKX3-1 4824 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 23539038 23539038 + Missense_Mutation SNP G G A TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 GATCACCTGAGTGTGGGAGAA 0.577 17 142 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76909629 76909629 + Nonsense_Mutation SNP G G A TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 TTAATACGTCGCCTTTTCTTT 0.328 42 14 IBTK 25998 broad.mit.edu;ucsc.edu 37 6 82912294 82912294 + Missense_Mutation SNP A A G TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 TGTAAACAAGACAGTTTCAAC 0.343 15 126 PSG1 5669 broad.mit.edu;ucsc.edu 37 19 43382350 43382350 + Missense_Mutation SNP T T C TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 AGAACATCCTTCCCCTCGGAA 0.473 37 301 FAM189A2 9413 broad.mit.edu;ucsc.edu 37 9 72000864 72000864 + Splice_Site SNP G G T TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 GAGGAGAGAGGTGATGTCATT 0.577 16 39 CDK16 5127 broad.mit.edu;ucsc.edu 37 X 47082981 47082981 + Missense_Mutation SNP C C T TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 GAAGATCAAACGGCAGCTGTC 0.532 4 26 SMARCA4 6597 hgsc.bcm.edu 37 19 11170839 11170839 + Silent SNP T T C TCGA-FG-8191-01A-11D-2253-08 TCGA-FG-8191-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx fcc461af-d70d-4fca-ae7f-3f09367b6d51 6a19fe53-192d-492a-98ba-54d24a6f3574 TGAGTGACGATGACAGTGAGG 0.687 5 0