Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
LRRIQ1	84125	hgsc.bcm.edu;ucsc.edu	37	12	85623348	85623348	+	Missense_Mutation	SNP	C	C	T	rs1395676	by1000genomes	TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	AAAATTAGAACGGAATAGAGA	0.358	55	53
C17orf53	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	42225428	42225428	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	GCCTCCAGCACGCCCAGTGCT	0.602	44	72
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	17945744	17945744	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	CACTTGTCAGCTTCCAAGCTA	0.617	29	39
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42791757	42791757	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	CAAGCGGCACCGGGCCCTGGT	0.612	36	13
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	27105550	27105550	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	AGAATATTTCCGACGATGCCT	0.443	23	174
LPHN2	23266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	82408735	82408735	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	GTGCTTGGTGCAAGGACCCTC	0.408	9	41
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	ATAAGCATGACGACCTATGAT	0.393	32	55
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	38936278	38936278	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	GGTAAGTTTTGCTTCCTGCAC	0.488	47	70
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	178952072	178952072	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	CATGAAACAAATGAATGATGC	0.368	41	46
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	32053695	32053695	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	ACCCGCATGCGCAGTTGGAAG	0.672	42	52
C7orf63	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	89929253	89929253	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	CAAAACTGCAGCTCATGTCAA	0.348	20	21
SLC13A1	6561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	122768985	122768985	+	Silent	SNP	C	C	T			TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	GGACCAAGGTCACAATTTCTT	0.418	13	22
TTN	7273	broad.mit.edu;ucsc.edu	37	2	179434377	179434377	+	Silent	SNP	G	G	A			TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	GTCCAGGGACGTCAGCATGTT	0.373	5	17
CRIPAK	285464	broad.mit.edu;ucsc.edu	37	4	1388948	1388948	+	Missense_Mutation	SNP	A	A	C	rs71299249	byFrequency	TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	GCCCATGTGGAGTGTTCGCCT	0.662	4	25
NIPBL	25836	broad.mit.edu;hgsc.bcm.edu	37	5	37048690	37048693	+	Frame_Shift_Del	DEL	TCAG	TCAG	-			TCGA-HT-7468-01A-11D-2024-08	TCGA-HT-7468-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	053517e5-fb21-4127-b893-bdda23e4de42	219554d7-3116-498e-8f48-05286e616cc7	TAAGAACTCCTCAGTCAATTTAAA	0.353	25	37