Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count FRMD4A 55691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 13825006 13825006 + Splice_Site SNP C C T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 CTATATAGAACCTGAAAGAGA 0.428 41 60 KMT2A 4297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 118374340 118374340 + Missense_Mutation SNP C C T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 CAACCAAGCCCCAATAATACC 0.473 15 70 OR8B4 283162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 124294595 124294595 + Missense_Mutation SNP G G A TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 AAAGTACATGGGGGTGTGAAG 0.413 30 57 PCDH20 64881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 61986933 61986933 + Silent SNP G G A TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 CATCTATCTCGTTTGCTATGT 0.418 22 110 MYH6 4624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 23862627 23862627 + Missense_Mutation SNP T T C TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 CTGAAGGTCATCCAGGGCCTG 0.512 56 56 LRRC49 54839 hgsc.bcm.edu;broad.mit.edu 37 15 71300791 71300791 + Missense_Mutation SNP G G A TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 TGAAGTGGACGGGGATACACT 0.418 3 67 TXNDC11 51061 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 11785796 11785796 + Missense_Mutation SNP G G A TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 CGCTGTGATCGTTGGCGGGTC 0.642 29 34 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577539 7577539 + Missense_Mutation SNP G G A rs121912651 TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 ATGGGCCTCCGGTTCATGCCG 0.577 39 77 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7579314 7579314 + Missense_Mutation SNP T T G TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 CAACTGACCGTGCAAGTCACA 0.547 51 55 UNC13A 23025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 17743590 17743590 + Splice_Site SNP C C T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 AGGGGACTTACGCAGGGTACT 0.552 26 126 RYR1 6261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 39039015 39039015 + Silent SNP C C T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 TCCAGGACTACGTAACGGATC 0.552 39 83 CCDC30 728621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 43032078 43032078 + Nonsense_Mutation SNP C C T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 AAATGAGCTTCGATATGAACG 0.408 39 72 SYCP1 6847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 115401230 115401230 + Silent SNP A A G TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 AGATAAAAAAATGGAAAGTAA 0.328 15 71 H3F3A 3020 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 226252155 226252155 + Missense_Mutation SNP G G A TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 CTCTACTGGAGGGGTGAAGAA 0.458 18 28 NSFL1C 55968 hgsc.bcm.edu;broad.mit.edu 37 20 1445045 1445045 + Silent SNP G G A TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 CATCCCCTCCGTCCTCATAAA 0.522 14 189 CHGB 1114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 5905694 5905694 + Silent SNP G G A TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 CAAAGGGGCTGACTGTCATTG 0.438 30 34 BPI 671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 36952337 36952337 + Silent SNP C C T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 TGGAGTTTCCCGCTGCCCATG 0.537 35 72 ZNF217 7764 hgsc.bcm.edu;broad.mit.edu 37 20 52198916 52198916 + Missense_Mutation SNP G G C TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 AAGAATCTTTGTGTGTTCTCA 0.423 10 178 MX2 4600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 42774042 42774042 + Silent SNP C C T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 TTAGCATGCTCCAGAAAGCCA 0.517 26 93 ADARB1 104 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 46624592 46624592 + Missense_Mutation SNP G G A TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 ATGTACCAGCGGATCTCCAAC 0.522 44 75 SEC14L4 284904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 30886219 30886219 + Missense_Mutation SNP C C T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 TAGGTGTTGTCGAAGCGCAGG 0.592 37 123 DMC1 11144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 38935415 38935415 + Missense_Mutation SNP C C T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 GCGATCTGGACGGCTGGAGTA 0.403 40 57 UCN 7349 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 27530455 27530455 + Silent SNP C C T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 TCTGCGTCCGCGCCAGCTCCA 0.662 15 55 IL1RL2 8808 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 102818122 102818122 + Missense_Mutation SNP T T G TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 CAAGCCATACTGACACACTCA 0.478 35 33 EDAR 10913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 109547447 109547447 + Silent SNP C C T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 AGGGCGTCTGCGTGCAGTCCC 0.627 37 109 P2RY12 64805 hgsc.bcm.edu;broad.mit.edu 37 3 151055882 151055882 + Missense_Mutation SNP G G A TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 AAAATGGAAAGGAACAAAACA 0.428 3 39 TLR1 7096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 38799739 38799739 + Silent SNP C C T rs146940675 TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 TTTGAAGTTTCGCCAGAATAC 0.343 9 39 PDGFRA 5156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 55131206 55131206 + Missense_Mutation SNP C C T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 TGGACTTACCCTGGAGAAGTG 0.488 43 105 FSTL5 56884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 162697149 162697149 + Nonsense_Mutation SNP G G A TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 TCATTTTCTTGCATAATATAT 0.308 12 20 MCTP1 79772 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 94248540 94248540 + Silent SNP G G T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 TGCCCAAGCCGGAACTTCACG 0.473 25 93 T 6862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 166579237 166579237 + Missense_Mutation SNP G G A TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 CTGGGTCTCAGGGAAGCAGTG 0.557 76 378 HR 55806 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 21982885 21982885 + Silent SNP C C T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 ACAGTCGGTCCCCCAAACCAC 0.677 4 6 RLN1 6013 hgsc.bcm.edu;broad.mit.edu 37 9 5339680 5339680 + Missense_Mutation SNP C C G TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 TTGGCCGCGACTGCTCTGGAA 0.517 7 125 TMEFF2 23671 broad.mit.edu;ucsc.edu 37 2 192922465 192922465 + Missense_Mutation SNP G G T TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 ACAGGTGGATGTCTCCTTTTG 0.388 38 106 AFAP1L2 84632 broad.mit.edu;ucsc.edu 37 10 116060060 116060060 + Missense_Mutation SNP G G A rs144011687 byFrequency TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 CTGCTGTTCCGTCTGGATTTT 0.607 15 169 PDGFRA 5156 broad.mit.edu;hgsc.bcm.edu 37 4 55133717 55133720 + Splice_Site DEL AGAG AGAG - TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 TTCCCTGTACAGAGAAAGGTTTCA 0.441 22 91 SLC26A4 5172 broad.mit.edu;hgsc.bcm.edu 37 7 107312689 107312692 + Frame_Shift_Del DEL AGTT AGTT - rs111033199 TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 GACATATCTCAGTTGGTAATTATA 0.338 14 57 MGAT2 4247 broad.mit.edu;hgsc.bcm.edu 37 14 50089217 50089220 + Frame_Shift_Del DEL CTAA CTAA - TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 TCCAGAAACTCTAACTATCAGTGA 0.392 29 46 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76939510 76939511 + Frame_Shift_Del DEL AA AA - TCGA-HT-7469-01A-11D-2253-08 TCGA-HT-7469-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5180e0db-a8cc-475e-b250-87f067cca7c4 4092f0cb-b02b-4506-9b7f-610b1df3c8c8 CTCGGAATTTAAGTCTTCTTCC 0.361 187 5