Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CUBN 8029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 16990512 16990512 + Missense_Mutation SNP C C G TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 GTGGAAACCCCCAGCACTGAT 0.512 15 62 OR52E8 390079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 5878264 5878264 + Nonsense_Mutation SNP A A C TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 GGATCCTGACATAGGAGAGAA 0.463 12 28 LRP4 4038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 46893136 46893136 + Silent SNP G G A TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 GTTTCCCATTGAGGTCAGCAC 0.557 18 19 HTR3B 9177 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 113803068 113803068 + Silent SNP C C A TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 CATCTGGGACCATTGAGAACT 0.433 19 192 SNX19 399979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 130750571 130750571 + Nonsense_Mutation SNP G G A TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 GCCAGTTTCTGCTCTTGGGTC 0.517 52 263 HMGA2 8091 hgsc.bcm.edu;broad.mit.edu 37 12 66221789 66221789 + Silent SNP C C T TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 AGGAACCAACCGGTGAGCCCT 0.448 5 71 PTPRB 5787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 70954486 70954486 + Missense_Mutation SNP T T C TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 ATTGCTGAGATCTCCACTGTG 0.512 9 65 SHF 90525 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 45470424 45470424 + Silent SNP T T C TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 GGACCTTCTCTGGGGCTCCTG 0.567 16 41 RHBDF1 64285 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 111434 111434 + Silent SNP G G A TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 TGACGTTCTCGTAGACCCCGC 0.716 7 56 PRSS22 64063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2906139 2906139 + Silent SNP G G A TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 GAGAACCTGCGCAGTGGTGGG 0.617 17 99 ERCC4 2072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 14031642 14031642 + Missense_Mutation SNP G G A TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 TCTTATATACGGAGGTTCAAC 0.363 22 55 ANKRD11 29123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 89348104 89348104 + Missense_Mutation SNP C C T TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 TTGGGGTCTCCGGACCGGTGC 0.607 23 110 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 GCACAAACACGCACCTCAAAG 0.542 28 13 MYO19 80179 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 34866651 34866651 + Missense_Mutation SNP C C T TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 GCAGGGCTTCCGGAACACCTG 0.627 7 13 FCGBP 8857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 40357728 40357728 + Silent SNP G G A TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 AACAGCGCTCGCTGCAGTCTG 0.587 12 40 PPP1R12C 54776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 55605714 55605714 + Splice_Site SNP T T G TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 ACCCCACACCTGTGTGGACCT 0.657 27 135 AGL 178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 100346642 100346642 + Missense_Mutation SNP C C T TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 CATAGATCAGCGTATGATGCT 0.353 17 69 CEPT1 10390 hgsc.bcm.edu;broad.mit.edu 37 1 111726868 111726868 + Missense_Mutation SNP C C T TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 AATCAGATTGCGTCTCACCTG 0.398 6 121 TCHH 7062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 152080904 152080904 + Missense_Mutation SNP A A T rs71585886 TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 TCCTCCATGAATTTTCTCTCT 0.582 35 73 CFH 3075 hgsc.bcm.edu;broad.mit.edu 37 1 196642210 196642210 + Missense_Mutation SNP C C A TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 AAATGCCGCCCTGGATATAGA 0.403 9 117 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 237872820 237872820 + Missense_Mutation SNP C C T TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 AGCAGAGGAGCTCTTCCGCAT 0.418 10 12 ZNF638 27332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 71590305 71590305 + Missense_Mutation SNP A A C TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 GAATCCTGAGATCCTCCCATC 0.264 26 51 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G T rs121913499 TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 TAAGCATGACGACCTATGATG 0.398 34 107 TRPM8 79054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 234905020 234905020 + Missense_Mutation SNP A A G TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 TGGAAGTTCCAGAGGTACTTC 0.537 9 82 KCNH8 131096 hgsc.bcm.edu;broad.mit.edu 37 3 19575424 19575424 + Missense_Mutation SNP G G T TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 ATCAGAGGAGGGCAGCTTCAG 0.488 5 52 ABI3BP 25890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 100489774 100489774 + Silent SNP T T C TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 TGTCAGGCTTTTGGATGTATC 0.468 21 158 GPR149 344758 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 154146852 154146852 + Missense_Mutation SNP C C T TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 CTGGAGCAGTCCACCAGGCAG 0.657 7 47 STATH 6779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 70866654 70866654 + Silent SNP A A G TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 AATACCAACAATATACCTTTT 0.373 46 167 CAPSL 133690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 35910530 35910530 + Missense_Mutation SNP G G A TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 TCAAACCTCCGGAAAAGTTCT 0.358 18 89 SPOCK1 6695 hgsc.bcm.edu;ucsc.edu 37 5 136324179 136324179 + Missense_Mutation SNP G G A TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 GGAGTCACACGAGTTGAAAAG 0.498 46 139 RNF145 153830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 158621725 158621725 + Splice_Site SNP T T C TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 TATTCTTACCTGGAAATTTGA 0.363 65 155 COL19A1 1310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 70877920 70877920 + Missense_Mutation SNP A A G TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 TCCTAAGGGTATTCCATTTAA 0.279 15 101 PRDM1 639 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 106555167 106555167 + Missense_Mutation SNP G G A TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 AATTCTGGCCGTGGTCAGAAA 0.478 28 63 MICAL1 64780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 109770958 109770958 + Missense_Mutation SNP T T C TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 TCTGGGGATGTCTGTGACAGA 0.607 17 159 FOXB2 442425 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 79635448 79635448 + Missense_Mutation SNP C C T TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 CCCTTGGCGTCCGTCATGCAC 0.662 17 61 AKAP4 8852 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 49958837 49958837 + Missense_Mutation SNP C C T TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 CATTTCTAGACGTAGGTTTTG 0.443 49 62 DOPEY1 23033 broad.mit.edu;ucsc.edu 37 6 83839856 83839856 + Nonsense_Mutation SNP C C T TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 TGAGCATGTGCAGCCTCCACA 0.418 23 56 NOTCH1 4851 broad.mit.edu;ucsc.edu 37 9 139411837 139411837 + Splice_Site SNP C C A TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 ACCCTCGTAGCCTGTGGGGTG 0.647 4 9 SRPK2 6733 broad.mit.edu;ucsc.edu 37 7 104782648 104782648 + Silent SNP T T C rs56003957 byFrequency TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 GTCGTCCATTTGGCAATTCAC 0.443 23 131 TRAPPC11 60684 broad.mit.edu;ucsc.edu 37 4 184628079 184628079 + Missense_Mutation SNP T T G TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 CTTCATGTTCTCAGGTCTCAA 0.418 8 72 LRRTM4 80059 broad.mit.edu;ucsc.edu 37 2 76975874 76975874 + Missense_Mutation SNP T T C TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 CTGGCGATGGTGGCGATGAAG 0.617 49 169 ZW10 9183 broad.mit.edu;hgsc.bcm.edu 37 11 113614641 113614641 + Frame_Shift_Del DEL T T - TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 GTCCAATGTATTTTCAGGCTC 0.418 64 153 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76874329 76874330 + Frame_Shift_Ins INS - - T TCGA-HT-7470-01A-12D-2086-08 TCGA-HT-7470-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96f42efa-3605-4aef-8b3a-425bdfe1b51a 0d30db78-7ca2-423e-b60a-099aa73b2411 TTTCATCACTCTGACATCTACC 0.322 82 52