Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count SIK3 23387 hgsc.bcm.edu;broad.mit.edu 37 11 116719848 116719848 + Silent SNP G G A TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 AAGCATCGTCGCTGTTCTGGA 0.597 8 69 RPUSD1 113000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 837118 837118 + Missense_Mutation SNP G G A rs138346352 TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 CCGGCCCTCCGTGCTGTTCCT 0.692 6 14 SMPD3 55512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 68398674 68398674 + Missense_Mutation SNP T T C TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 GTTATCAAAGTTGAAATCTCC 0.572 7 54 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577138 7577138 + Missense_Mutation SNP C C G TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 AAAGCTGTTCCGTCCCAGTAG 0.527 22 7 TNN 63923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 175048764 175048764 + Silent SNP C C T TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 GCTGTCCCGGCGACTGCAGCG 0.667 12 10 NINL 22981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 25436318 25436318 + Silent SNP C C T TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 CCTGCTCCTTCAGCTTATCCA 0.488 57 147 NINL 22981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 25436402 25436402 + Silent SNP C C T TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 CTGTGGCTTTCAGCTGTTTCT 0.537 73 229 SSB 6741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 170667377 170667377 + Silent SNP C C T TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 GGGGATAATTCTATTTAAAGA 0.353 23 50 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179569078 179569078 + Missense_Mutation SNP T T C TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 CATGTCATGGTGCAAGTCTGG 0.423 21 147 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179641669 179641669 + Missense_Mutation SNP G G T TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 TTTGCATCTTGTAGTGTCTCT 0.463 8 62 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 ATAAGCATGACGACCTATGAT 0.393 24 44 MTERFD2 130916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 242039161 242039161 + Missense_Mutation SNP C C T TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 GGATCTAACACAAGATAACTC 0.498 14 96 GABRB1 2560 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 47427857 47427857 + Missense_Mutation SNP G G A TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 GCCTACGGGCGCGCCCTGGAC 0.642 18 51 GK2 2712 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 80327819 80327819 + Silent SNP A A G TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 TGGTAACCCAACCCATTGACT 0.438 29 81 ACSL6 23305 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 131329917 131329917 + Missense_Mutation SNP A A G TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 CTGTGTCTGCATCTTCTCCAG 0.547 9 14 OR2J3 442186 hgsc.bcm.edu;broad.mit.edu 37 6 29080500 29080500 + Missense_Mutation SNP C C T TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 AAGTTCATTGCCCTCTTTTAT 0.448 4 60 TAS2R16 50833 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 122635637 122635637 + Missense_Mutation SNP A A G TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 ATTGTCAAGGACTCAAGCACA 0.453 17 56 PAPPA 5069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 119139910 119139910 + Missense_Mutation SNP G G C TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 CTGATTCACTGTGTCAAAGGC 0.473 16 34 INPP5A 3632 broad.mit.edu;ucsc.edu 37 10 134521843 134521843 + Silent SNP C C A TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 AAGGCTTCATCCGGACGAGGT 0.463 7 31 ZPBP 11055 broad.mit.edu;ucsc.edu 37 7 49977166 49977166 + Silent SNP T T C rs138428432 TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 TGCTATTGCATTGAAGGCAAT 0.343 38 86 FSIP1 161835 broad.mit.edu;hgsc.bcm.edu 37 15 39910298 39910305 + Frame_Shift_Del DEL CTGGAAAG CTGGAAAG - rs34939408 TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 GATGATGGACCTGGAAAGCTGGGGGAAC 0.38 21 93 TLR7 51284 broad.mit.edu;hgsc.bcm.edu 37 X 12906637 12906645 + In_Frame_Del DEL CGGAAAAGG CGGAAAAGG - TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 CCTCCAGCTCCGGAAAAGGCTCTGTGGGA 0.474 41 67 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76855981 76855982 + Frame_Shift_Ins INS - - A TCGA-HT-7474-01A-11D-2024-08 TCGA-HT-7474-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6c068572-2fc4-4547-8f85-697edb9db0d0 e28a47e8-8e77-4f3f-802c-3f7709ad5da6 GAAAATCTTGGAAAAGCTTTGC 0.361 88 76