Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count DUPD1 338599 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 76803657 76803657 + Nonsense_Mutation SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 CCGTGGTACTGGATGTCCATG 0.642 39 59 HPS6 79803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 103826085 103826085 + Missense_Mutation SNP T T G TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TTGCTTGACTTCGGGGGCACT 0.682 20 38 PHF21A 51317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 45959824 45959824 + Missense_Mutation SNP T T C TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 AACTGGCCACTTTTTCTGCAA 0.403 29 40 OR5M3 219482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 56237959 56237959 + Silent SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 CTGTCACATCGGTGAAATTGA 0.328 20 39 OR4D6 219983 hgsc.bcm.edu;broad.mit.edu 37 11 59224535 59224535 + Silent SNP G G T TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TCTTTGCTGTGTATGTAGCAA 0.458 6 102 USP35 57558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 77916930 77916930 + Missense_Mutation SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 GCAGCTGCTGGGGCAGGATGC 0.587 71 92 KMT2D 8085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 49446390 49446390 + Silent SNP T T C TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 GTTCCTTGGGTTGCATAGAGG 0.557 13 11 AHNAK2 113146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 105409595 105409595 + Missense_Mutation SNP C C T TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 CCCTTGAGGTCCACTTTGGGC 0.602 102 204 SCNN1B 6338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 23382718 23382718 + Missense_Mutation SNP C C T TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 GAGGTCATACCCCTTCATCAG 0.602 14 33 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578226 7578226 + Missense_Mutation SNP T T C TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 AGTGTTTCTGTCATCCAAATA 0.532 18 35 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7579358 7579358 + Missense_Mutation SNP C C G rs11540654 TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 GAAGCCCAGACGGAAACCGTA 0.612 21 44 EZH1 2145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 40869993 40869993 + Splice_Site SNP C C A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TAAGAACATACCAGCAAAAGG 0.413 21 30 MPO 4353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 56357985 56357985 + Silent SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 CACCTTCAGAGGGCTGGGGCG 0.597 25 57 PTPRM 5797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 7949178 7949178 + Splice_Site SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 ACTTGATACAGGGCATTGATG 0.448 43 59 DSG1 1828 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 28911710 28911710 + Missense_Mutation SNP C C A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 ATGAACCGAACAATTTGAACT 0.333 21 38 NOL4 8715 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 31709958 31709958 + Silent SNP T T C TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 GTCGTAAAGATAGCTTCTCAT 0.373 19 27 PIK3R2 5296 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 18272833 18272833 + Silent SNP C C T rs68016487 TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TTCAGGAACACTTGGAAGAGC 0.612 30 38 WBP7 9757 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 36216441 36216441 + Missense_Mutation SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 GAGGCCGAGCGGCCCCTGCCC 0.597 87 167 ZNF567 163081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 37203719 37203719 + Missense_Mutation SNP T T G TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 ATCCTCAAGTTGGAACGAGGA 0.423 19 36 ZNF600 162966 hgsc.bcm.edu;broad.mit.edu 37 19 53269430 53269430 + Missense_Mutation SNP T T C TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TCATTACACTTGTAAGGTTTC 0.453 11 114 ATAD3B 83858 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 1421533 1421533 + Missense_Mutation SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 ATAGCAACCAGGAACACCAAG 0.642 37 82 STPG1 90529 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 24727850 24727850 + Missense_Mutation SNP C C T TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TTTGCCAGTGCGTTCATTTTT 0.418 18 26 CD1B 910 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 158298711 158298711 + Splice_Site SNP C C T TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 CACAACTCACCGGCGCCTCAT 0.388 13 55 UAP1 6675 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 162557442 162557442 + Silent SNP C C T TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TGTACCATTTCTGAGAGATGT 0.433 71 208 MACROD2 140733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 15843442 15843442 + Missense_Mutation SNP A A T TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 AAAATCTACAAAAAGAAAATG 0.348 15 31 TPTE 7179 hgsc.bcm.edu;broad.mit.edu 37 21 10970032 10970032 + Silent SNP G G A rs147186596 TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 GTGCCTCCTCGGTTGCTCCTT 0.398 30 124 CECR1 51816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 17684592 17684592 + Missense_Mutation SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TTCAAATTTCGACCAGACAAC 0.493 17 30 IL1RL1 9173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 102956649 102956649 + Missense_Mutation SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 GTATTCAACAGTATCTGGATC 0.343 13 19 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 ATAAGCATGACGACCTATGAT 0.393 26 61 PTH2R 5746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209308141 209308141 + Missense_Mutation SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 AGAGCTACAAGCATCTTTGTC 0.403 26 40 CABS1 85438 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 71201800 71201800 + Silent SNP T T C TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 AAACTGATAATACAGAGACTG 0.408 28 52 ART3 419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 77018801 77018801 + Silent SNP A A G TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TTTCAGGACTAAAAACCGAAA 0.323 22 63 BMP2K 55589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 79793907 79793907 + Missense_Mutation SNP C C T TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TCATCACTTCCAGCTCAGGTT 0.448 35 54 KLKB1 3818 hgsc.bcm.edu;broad.mit.edu 37 4 187178500 187178500 + Missense_Mutation SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TATAAAGAAGGGGGAAAAGAT 0.323 9 172 SRP19 6728 hgsc.bcm.edu;ucsc.edu 37 5 112203073 112203073 + Silent SNP T T C TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TCTCAGATTATACACTAAGCC 0.308 33 33 EBF1 1879 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 158140057 158140057 + Silent SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TCATCCCTGCGTGGACCGAGG 0.557 41 43 FANCE 2178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 35423550 35423550 + Missense_Mutation SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 CGATTGCCCCGGATATGCCAG 0.592 48 42 AKAP9 10142 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 91736724 91736724 + Missense_Mutation SNP C C T TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TCCCCTTTACCATTTCAGAAT 0.353 96 36 PIK3CG 5294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 106508596 106508596 + Missense_Mutation SNP C C T TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 AAGCTCTACGCCATGCACCCG 0.632 22 177 COG5 10466 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 106938740 106938740 + Missense_Mutation SNP C C T rs35258567 byFrequency TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 ATTATAAAGACGTAATAATTT 0.343 93 34 FGF20 26281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 16850596 16850596 + Silent SNP T T C TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TGTACATCAGTAGGTCCTTGT 0.423 47 76 TMEM66 51669 hgsc.bcm.edu;broad.mit.edu 37 8 29923548 29923548 + Missense_Mutation SNP T T C TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 ACATACCGAATAGCTGCCCGA 0.473 5 81 ZMAT4 79698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 40532420 40532420 + Missense_Mutation SNP C C T TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 AGTGTCCATCCGTGGGGGCTT 0.527 56 109 PKHD1L1 93035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 110493686 110493686 + Missense_Mutation SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 CGGTGGCTGGGAAGATAACCC 0.378 15 7 COL22A1 169044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 139791795 139791795 + Missense_Mutation SNP C C T TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TCCCAGCTCTCCTGGCTCCCC 0.622 26 83 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76813076 76813076 + Missense_Mutation SNP T T C TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 CAGTGACTGCTTAGTTACTTG 0.333 70 10 C2 717 broad.mit.edu;ucsc.edu 37 6 31902169 31902169 + Silent SNP C C A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 CACTCACAGCCCACCTCCTCC 0.473 14 27 LRIF1 55791 broad.mit.edu;ucsc.edu 37 1 111494470 111494470 + Nonsense_Mutation SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TTTTTGGATCGCGTCCCACTA 0.353 49 78 CD300LB 124599 broad.mit.edu;ucsc.edu 37 17 72518906 72518906 + Missense_Mutation SNP C C T TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 GTCAGAGGTTCGGAGAAGTTC 0.547 32 49 TRBV6-4 28603 broad.mit.edu;ucsc.edu 37 7 142250978 142250978 + RNA SNP G G A TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 GTGCCTGGGTGATCCCAGCAG 0.522 21 123 SULT1C2 6819 broad.mit.edu;hgsc.bcm.edu 37 2 108921152 108921152 + Frame_Shift_Del DEL A A - TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 TCATCAATGGAAAAGGTACGG 0.473 37 73 ZNF454 285676 broad.mit.edu;hgsc.bcm.edu 37 5 178392212 178392221 + Frame_Shift_Del DEL GAAGCCTTTT GAAGCCTTTT - TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 ATACTGGAGAGAAGCCTTTTGAATGCAACT 0.395 24 68 SMOC1 64093 broad.mit.edu;hgsc.bcm.edu 37 14 70442501 70442502 + Frame_Shift_Del DEL TC TC - TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 CAGTGGCTCTTCTGTGCAGAAT 0.525 24 41 EIF4A1 1973 broad.mit.edu;hgsc.bcm.edu 37 17 7477923 7477923 + Frame_Shift_Del DEL C C - TCGA-HT-7475-01A-11D-2024-08 TCGA-HT-7475-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx bec9fcfd-d067-4fd3-9527-131617b1b06b fa4ffd6d-1941-46d3-afdd-cfbc91191dd1 AGTCCCTTCTCCGTGGCATCT 0.478 28 52