Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MYO3A 53904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 26241102 26241102 + Missense_Mutation SNP G G C TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 CTGATACATGGGAAATCACTG 0.328 16 52 TYR 7299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 88911234 88911234 + Missense_Mutation SNP C C T TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 TGCTGTCCACCGTGGAGCGGG 0.547 21 42 TEAD4 7004 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 3129912 3129912 + Silent SNP C C T TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 TCTCTGCCTTCCTGGAGCAGC 0.682 25 53 UNC13C 440279 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 54306802 54306802 + Nonsense_Mutation SNP C C T TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 TTCAGAAAATCAGTTTTTCAC 0.428 12 35 GNAO1 2775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 56388962 56388962 + Nonsense_Mutation SNP C C G TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 GCGGCTTGTACTGACCTCTTG 0.527 18 51 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577120 7577120 + Missense_Mutation SNP C C T rs28934576 by1000genomes TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 GGCACAAACACGCACCTCAAA 0.542 18 14 RBFADN 100506070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 77794645 77794645 + Silent SNP G G C TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 AATTTGCCTCGAAAACCAAGT 0.632 14 39 FSD1 79187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 4318904 4318904 + Missense_Mutation SNP G G A TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 CCCTCAGGTCGTGGGGGACGG 0.597 22 36 C19orf66 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 10202008 10202008 + Missense_Mutation SNP C C T TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 TTCCACTGCCCGAAGTGTCGG 0.692 10 22 NLRP11 204801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56321528 56321528 + Missense_Mutation SNP A A G TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 CCCATCAGGAACACATTGAGA 0.388 12 34 ZSCAN5A 79149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56736304 56736304 + Missense_Mutation SNP C C T rs145104621 byFrequency TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 TCAGGGTCCACGTCGTGATTT 0.532 14 82 MTOR 2475 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 11184641 11184641 + Silent SNP C C T TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 CATCCTGGCGCAGATCTTCAT 0.507 14 54 PLA2G4A 5321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 186946833 186946833 + Missense_Mutation SNP C C G TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 TGTCTTTAAACCCAAGAATCC 0.443 30 90 GREB1 9687 hgsc.bcm.edu;broad.mit.edu 37 2 11728938 11728938 + Missense_Mutation SNP C C T rs151098036 by1000genomes TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 CTCTTGTACACGTGCTACCAG 0.592 7 91 FSHR 2492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 49190307 49190307 + Missense_Mutation SNP G G T TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 TGAGGTAGATGTGGATATAGC 0.527 10 29 BAZ2B 29994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 160295595 160295595 + Missense_Mutation SNP T T A TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 TACTTTGAtcttcttcttctt 0.363 13 110 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 ATAAGCATGACGACCTATGAT 0.393 30 63 CXCR2 3579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 219000407 219000407 + Missense_Mutation SNP G G C TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 CATCGACCGGGCTCTGGATGC 0.592 27 69 UGT1A6 54578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 234602275 234602275 + Missense_Mutation SNP G G C TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 TTCCCAACGAGTGGCCAACTT 0.448 63 131 CEP97 79598 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 101447686 101447686 + Missense_Mutation SNP G G C TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 ATAGGCCATGGAACAGATCAA 0.353 35 67 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A T rs121913279 TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 AATGATGCACATCATGGTGGC 0.378 12 83 PDGFRA 5156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 55152105 55152105 + Missense_Mutation SNP A A G rs121913268 TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 ATCATGCATGATTCGAACTAT 0.498 8 156 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76813082 76813082 + Missense_Mutation SNP A A G TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 CTGCTTAGTTACTTGCCGATC 0.348 39 25 MAU2 23383 broad.mit.edu;ucsc.edu 37 19 19456112 19456112 + Splice_Site SNP G G A TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 CCTTCTTCCAGGGCCTGTACT 0.672 35 70 PRDM13 59336 broad.mit.edu;ucsc.edu 37 6 100062262 100062262 + Missense_Mutation SNP G G A TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 CTGTACTCGCGCAAGTATGGG 0.662 3 27 TRIM35 23087 broad.mit.edu;ucsc.edu 37 8 27145295 27145295 + Silent SNP C C T TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 GGACCAGGGGCGACGTGGCTG 0.667 4 10 TUBB4B 10383 broad.mit.edu;ucsc.edu 37 9 140136262 140136262 + Silent SNP G G A TCGA-HT-7478-01A-11D-2024-08 TCGA-HT-7478-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx ded8014c-bb43-4e2b-af8e-0975936031c3 ceb62f6b-8044-4a7b-97f9-da9ad10c8021 GCATCAACGTGTACTACAATG 0.687 5 40