Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count FBXO18 84893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 5948527 5948527 + Missense_Mutation SNP G G T TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b CTTCCTCCCGGTGGAAGACCT 0.567 35 124 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu 37 11 1269703 1269703 + Missense_Mutation SNP G G A TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b CACTACCAAAGTGCCGACTAC 0.642 20 157 ATG13 9776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 46671757 46671757 + Silent SNP G G A TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b TTTCCTACACGGTGTACAACA 0.433 35 63 OR4K2 390431 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 20345254 20345254 + Silent SNP C C A TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b TGTTTTATACCATCTTTACTC 0.358 16 114 MAX 4149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 65544633 65544633 + Missense_Mutation SNP T T G TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b GTGCTCACCTTGCTGCTCCAG 0.557 17 62 SUPT6H 6830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 27018008 27018008 + Missense_Mutation SNP C C T TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b TATGACCAGGCGATCCGCAAT 0.552 9 70 KRT37 8688 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 39580429 39580429 + Missense_Mutation SNP G G A TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b CAGGTAGTTGGCCAGGCGGTC 0.582 55 114 ST6GALNAC1 55808 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 74625638 74625638 + Missense_Mutation SNP G G A TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b GTCTCCGGTGGTGTGGGCCTT 0.597 8 40 USP14 9097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 202880 202880 + Splice_Site SNP C C T TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b TCTTTCTTAGCGACTTCAGGA 0.353 11 54 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42796451 42796451 + Splice_Site SNP G G T TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b TCCTGCGGCAGAATCACCTAT 0.662 41 68 NPR1 4881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 153655965 153655965 + Silent SNP C C T rs142090901 byFrequency TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b GCTTTGACAACGAAGACCCAG 0.587 32 142 CD244 51744 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 160811091 160811091 + Silent SNP G G A TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b ATGTGTGAGTGCCATTAATGT 0.517 32 152 SLC26A9 115019 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 205897099 205897099 + Silent SNP G G A TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b TGATGACGTAGCTCACGATGG 0.632 12 86 CHGB 1114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 5905619 5905619 + Splice_Site SNP A A G TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b ATTTTCCAGAAAAAAGAACTC 0.443 18 24 KCNG1 3755 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 49626813 49626813 + Silent SNP G G A TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b GGAAGGAGGCGTCCGAGGTGC 0.672 11 39 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b ATAAGCATGACGACCTATGAT 0.393 47 65 TLR9 54106 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52255381 52255381 + Missense_Mutation SNP C C A TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b GAGGCGCTGGCGCAGCCGCAC 0.706 5 27 PDGFA 5154 hgsc.bcm.edu;broad.mit.edu 37 7 540795 540795 + Missense_Mutation SNP C C T TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b CTTGTGGTCGCGCAGGCGCAC 0.542 15 236 PIGO 84720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 35093984 35093984 + Silent SNP G G A TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b CCACACCCAGGAAGTGAGCAA 0.557 12 44 DNAH11 8701 broad.mit.edu;ucsc.edu 37 7 21789848 21789848 + Missense_Mutation SNP C C G TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b AGGAGAAATCCCAGATCTGTT 0.348 7 11 MYH8 4626 broad.mit.edu;ucsc.edu 37 17 10300214 10300214 + Missense_Mutation SNP C C T TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b ATTCTGGAGCCGCTGCTTCGT 0.488 20 49 LATS2 26524 broad.mit.edu;ucsc.edu 37 13 21549240 21549240 + Silent SNP G G A TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b CGCTGGCATCGTTCCAAGGGC 0.557 51 152 DCHS1 8642 broad.mit.edu;ucsc.edu 37 11 6653011 6653011 + Missense_Mutation SNP G G A TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b TGCTGCTCACGGTCCAGGGTT 0.577 31 25 ZNF91 7644 broad.mit.edu;ucsc.edu 37 19 23542477 23542477 + Missense_Mutation SNP C C T TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b GGTTTCTCTCCGGTGTGCAAC 0.398 26 60 HRSP12 10247 broad.mit.edu;ucsc.edu 37 8 99129320 99129320 + Missense_Mutation SNP G G A TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b GATCAAGGACGACATGGCTAA 0.612 10 87 AFTPH 54812 broad.mit.edu;hgsc.bcm.edu 37 2 64779134 64779134 + Frame_Shift_Del DEL C C - TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b TGGTGAAAAGCCTCCTTGTCT 0.403 18 83 ENPP3 5169 broad.mit.edu;hgsc.bcm.edu 37 6 132059230 132059230 + Frame_Shift_Del DEL G G - TCGA-HT-7480-01A-11D-2086-08 TCGA-HT-7480-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5b0a47b5-0913-43b0-8508-71641e8d0521 c8ab24ab-a8ec-454b-9f9b-056ec420144b AAGAAATGGAGTAAATGTGGT 0.313 14 48