Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count GATA3 2625 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 8100386 8100386 + Silent SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 TCTCCAAGACGTCCATCCACC 0.697 101 166 FRMD4A 55691 hgsc.bcm.edu;broad.mit.edu 37 10 13698931 13698931 + Silent SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CGTCGCCGCCGCCGCCGCGCC 0.716 4 8 OR4X2 119764 hgsc.bcm.edu;broad.mit.edu 37 11 48267032 48267032 + Missense_Mutation SNP C C G TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 AGCTACACCACCATCATGAAC 0.498 6 99 CPSF7 79869 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 61178544 61178544 + Silent SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CCCGGGACCGGCTAGGTGACC 0.502 58 86 TYR 7299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 88961080 88961080 + Missense_Mutation SNP C C G rs61754389 TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 AACAATGTCCCAGGTACAGGG 0.413 23 131 C11orf65 0 hgsc.bcm.edu;broad.mit.edu 37 11 108256655 108256655 + Missense_Mutation SNP T T C TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 ACCTTTGAAGTTAGCCGAAGA 0.333 14 236 NNMT 4837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 114182852 114182852 + Missense_Mutation SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CCAGCCACTGGGGGCCGTCCC 0.602 96 90 ITPR2 3709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 26985668 26985668 + Missense_Mutation SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CGCGTACAGGGACACGATGTC 0.622 33 165 IGDCC4 57722 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 65684524 65684524 + Silent SNP C C T TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 GGACAGGCCCCACATCCCAAG 0.622 59 95 MGRN1 23295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 4732911 4732911 + Silent SNP C C T TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CACTGGGTGGCGCAGAGCTGG 0.701 14 20 IRF8 3394 hgsc.bcm.edu;broad.mit.edu 37 16 85952180 85952180 + Silent SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 TGCGCTTCCCGCCGGCCGACG 0.741 16 6 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577570 7577570 + Missense_Mutation SNP C C T TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 AACTGTTACACATGTAGTTGT 0.567 51 72 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578263 7578263 + Nonsense_Mutation SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CCTTCCACTCGGATAAGATGC 0.552 24 50 CLUL1 27098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 618009 618009 + Silent SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 ACATGAAGCCGCCACTCTTGG 0.448 8 40 LIPG 9388 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 47107968 47107968 + Missense_Mutation SNP T T C TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 GCCAAGAAAATGAGGAACAAG 0.493 69 91 NFATC1 4772 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 77227575 77227575 + Silent SNP C C T TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CCTACCTTCCCGCCAACGGTA 0.532 28 61 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9062722 9062722 + Missense_Mutation SNP T T C TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 ACAAGAGTGGTCATCTCTGAG 0.498 33 32 HKR1 284459 hgsc.bcm.edu;broad.mit.edu 37 19 37838730 37838730 + Missense_Mutation SNP C C T TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CGAGGGGAAGCGCCCTGGAGA 0.493 4 63 RYR1 6261 hgsc.bcm.edu;broad.mit.edu 37 19 38995497 38995497 + Missense_Mutation SNP A A G TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 GCAGAGAAAAAGGCCACAGTG 0.597 4 59 ZC3H4 23211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 47593321 47593321 + Silent SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CCTCCTCGTCGCCCTCATATT 0.577 45 84 FASLG 356 hgsc.bcm.edu;broad.mit.edu 37 1 172634805 172634805 + Silent SNP C C A rs80358236 TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 GGGAAGACACCTATGGAATTG 0.428 5 81 C20orf194 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 3356865 3356865 + Missense_Mutation SNP T T C TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 ATTTCTCCAATGTGCCACATA 0.368 50 31 PCK1 5105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 56139236 56139236 + Missense_Mutation SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 TCATTTAAGGGCCATCAACCC 0.448 12 47 APOB 338 hgsc.bcm.edu;broad.mit.edu 37 2 21230555 21230555 + Nonsense_Mutation SNP A A C TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 TGTTAACCTTAATGGAAAACG 0.408 6 72 TEKT4 150483 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 95542422 95542422 + Missense_Mutation SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 GGACATTGCCGCCATGACCAA 0.592 23 45 ZEB2 9839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 145147369 145147369 + Silent SNP T T C TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CCAAGTGCCCTTTCTCGCGCG 0.617 27 66 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 170030513 170030513 + Missense_Mutation SNP T T C TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CAGCGGCCATTAGCACACCGA 0.542 37 54 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G T rs121913499 TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 TAAGCATGACGACCTATGATG 0.398 67 56 ZFAND2B 130617 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 220072487 220072487 + Missense_Mutation SNP C C G TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 TGATCCAGCACAGCAAAAACG 0.557 12 97 OR5H1 26341 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 97852349 97852349 + Missense_Mutation SNP C C G TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 AGCAGATGATCAAGATATGGT 0.428 41 43 ACAD9 28976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 128628194 128628194 + Missense_Mutation SNP C C G TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 TAGGACAGTGCCAACAAGTTT 0.587 57 113 AADACL2 344752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 151461908 151461908 + Missense_Mutation SNP G G C TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 TTCCTGAATAGATGGACGGCA 0.358 55 79 GPBP1 65056 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 56546841 56546841 + Nonsense_Mutation SNP C C T TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 GGATATAAACCGAAACTTCGA 0.353 18 32 KIF6 221458 hgsc.bcm.edu;broad.mit.edu 37 6 39513460 39513460 + Missense_Mutation SNP C C G TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 ATTAGTTTTTCCAGCCTAAAA 0.338 4 65 C6orf118 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 165715396 165715396 + Missense_Mutation SNP A A G TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 GAAGTGTGGGAAAGAGAGGCC 0.627 21 135 SDK1 221935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 4185446 4185446 + Missense_Mutation SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CACAGCCACCGACCTGGCCCC 0.667 97 56 PKD1L1 168507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 47897211 47897211 + Missense_Mutation SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 ACCTGCCCAGGAGCTTGGCTC 0.493 14 19 PCLO 27445 hgsc.bcm.edu;broad.mit.edu 37 7 82580131 82580131 + Missense_Mutation SNP T T C TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CTGCAGCTCCTCCAACTTTTT 0.453 11 153 ABCB1 5243 hgsc.bcm.edu;broad.mit.edu 37 7 87214993 87214993 + Missense_Mutation SNP G G A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 TTTGAATAGCGAAACTAAAAA 0.378 19 41 DOCK4 9732 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 111617325 111617325 + Missense_Mutation SNP T T A TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 TTTCTTCCGATGTCGATGTTC 0.502 11 8 SLC20A2 6575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 42297083 42297083 + Silent SNP C C T TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CACCTGGTAGCTCTTTAAATA 0.517 122 170 XIAP 331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 123034427 123034427 + Missense_Mutation SNP A A G TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 ATAATGGAGGAAAAAATTCAG 0.368 32 5 VPS13D 55187 broad.mit.edu;ucsc.edu 37 1 12439544 12439544 + Missense_Mutation SNP A A G TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 TTTTCCAGATACGAGCCACTG 0.498 40 60 PBX2 5089 broad.mit.edu;ucsc.edu 37 6 32157564 32157564 + Silent SNP C C A rs151067717 TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CTCCCGGGACCCCCCCGCTAC 0.711 32 66 C12orf63 0 broad.mit.edu;ucsc.edu 37 12 97151344 97151344 + Missense_Mutation SNP C C T TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 ATAAAAATTTCAGGATCACCA 0.303 5 16 FAM212B 55924 broad.mit.edu;ucsc.edu 37 1 112270041 112270041 + Missense_Mutation SNP C C T rs142952172 TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 ATTCCGGCCCCGGGACATCAA 0.587 35 44 UHRF1BP1 54887 broad.mit.edu;ucsc.edu 37 6 34827130 34827130 + Silent SNP G G A rs73419681 by1000genomes TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CTGGCAGGGAGACTGCTGTGA 0.552 31 54 H2AFX 3014 broad.mit.edu;hgsc.bcm.edu 37 11 118965808 118965809 + Frame_Shift_Ins INS - - C TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 TCGTCACGCCGCCCAGCAGCTT 0.693 73 191 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76937745 76937745 + Frame_Shift_Del DEL T T - TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 TTTTAATTACTTTTTTCTTAA 0.338 52 8 PIK3R1 5295 hgsc.bcm.edu 37 5 67593256 67593256 + Missense_Mutation SNP A A C TCGA-HT-7604-01A-11D-2086-08 TCGA-HT-7604-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5211e243-bc17-4e8b-923c-8ca6cec24a7e 2d99f565-7fa6-435a-aa7a-f10f78fe5b90 CGGCGAAGTAAAGCATTGTGT 0.423 18 93