Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
KCNK18	338567	hgsc.bcm.edu;broad.mit.edu	37	10	118957048	118957048	+	Silent	SNP	C	C	T			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	CCCAGAGGCCCTGGGAAAGCT	0.632	5	76
PRPF40B	25766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	50036431	50036431	+	Silent	SNP	C	C	G			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	GGATCCGGCTCTTCCGGGAGT	0.557	29	32
EIF2B1	1967	hgsc.bcm.edu;broad.mit.edu	37	12	124111689	124111689	+	Silent	SNP	G	G	A	rs146748240	byFrequency	TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	TGGAGTAGGCGTGAGTCAATA	0.562	9	138
TSHR	7253	hgsc.bcm.edu;broad.mit.edu	37	14	81609744	81609744	+	Missense_Mutation	SNP	G	G	A	rs146403935	by1000genomes	TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	CAAACTGAACGTCCCCCGCTT	0.517	14	202
KLHL25	64410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	86312652	86312652	+	Silent	SNP	G	G	A			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	CCCGCACATCGTGGAACTGCA	0.622	10	60
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	10299697	10299697	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	TGTTCTACTTGCTTCTTTATT	0.383	6	28
KRT15	3866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	39673185	39673185	+	Missense_Mutation	SNP	C	C	T	rs138271368		TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	TCAGCCTCAACGCCCTGGCGC	0.612	14	89
DNM2	1785	hgsc.bcm.edu;ucsc.edu	37	19	10908139	10908139	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	AGTTTGAAGTGTGTTGATCTC	0.517	24	78
AXL	558	hgsc.bcm.edu;broad.mit.edu	37	19	41763470	41763470	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	GGAGAACAGCGAGATTTATGA	0.557	6	116
C1orf65	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	223567391	223567391	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	TCCCTCGGAGCGGTCTTCTGT	0.597	64	82
RIPK4	54101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	43161859	43161859	+	Silent	SNP	G	G	A			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	CATCCTTGGCGTTGACACTGA	0.632	12	136
TOP3B	8940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	22322990	22322990	+	Splice_Site	SNP	C	C	A			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	AGGCAAGGAACCTTGGCCTGC	0.552	22	76
RASD2	23551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	35947956	35947956	+	Silent	SNP	C	C	T	rs144245051		TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	AGGAGATGGACGCCTATGGCA	0.642	24	52
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	ATAAGCATGACGACCTATGAT	0.393	43	79
OTOP1	133060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	4199681	4199681	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	TCAACTTTGCGCCCGATGTTC	0.567	38	91
IL17F	112744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	52103580	52103580	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	GACATGGAAACGCGCTGGTTT	0.448	35	52
AP1S1	1174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	100799992	100799992	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	GGTTGTCCTGGCTCGAAAGCC	0.537	5	19
TIGIT	201633	broad.mit.edu;ucsc.edu	37	3	114026861	114026861	+	Silent	SNP	A	A	G			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	CAGAAGCTGCACCTGCTGGGC	0.572	45	91
LMNA	4000	broad.mit.edu;ucsc.edu	37	1	156104684	156104684	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	CGGCTGGCGGATGCGCTGCAG	0.582	20	85
FUBP1	8880	broad.mit.edu;hgsc.bcm.edu	37	1	78422268	78422269	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	TTGTCCATTAGTTTGAGTTGTA	0.406	54	41
CIC	23152	broad.mit.edu	37	19	42792020	42792021	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-HT-7608-01A-11D-2086-08	TCGA-HT-7608-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	89a5c656-38cc-4852-ac49-3a7ca6d164a0	1284b1b6-b9f7-4ee6-9ae2-f7da19f9deb6	AAGGACCGAAAGAAGTCCAGCT	0.649	5	5