Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PCBP2 5094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 53865444 53865444 + Missense_Mutation SNP G G A TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 ATAATCGGGCGTCAAGGCGCC 0.498 6 44 LRP1 4035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 57601869 57601869 + Missense_Mutation SNP G G A TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 CTGGGTGGCCGGAAACGTGTA 0.577 25 43 ATG2B 55102 hgsc.bcm.edu;broad.mit.edu 37 14 96798962 96798962 + Missense_Mutation SNP A A G TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 AGACATGTCCATATCAGCCAT 0.378 7 69 TTC23 64927 hgsc.bcm.edu;broad.mit.edu 37 15 99678265 99678265 + Missense_Mutation SNP G G A TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 GTGTCCTGAGGGATGCTGGTG 0.607 5 51 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577120 7577120 + Missense_Mutation SNP C C T rs28934576 by1000genomes TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 GGCACAAACACGCACCTCAAA 0.542 13 12 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578176 7578176 + Splice_Site SNP C C T TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 GCAAACCAGACCTCAGGCGGC 0.527 16 25 KRT26 353288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 38926339 38926339 + Silent SNP G G A TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 CCACGTTCACGTTCCCCCCAG 0.488 70 71 MYH14 79784 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 50720927 50720927 + Missense_Mutation SNP A A G TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 CTTCCCATCTACACAGAAGCC 0.607 62 84 LILRB2 10288 hgsc.bcm.edu;broad.mit.edu 37 19 54782405 54782405 + Missense_Mutation SNP C C A TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 AAGGGTGTGCCACGGATCTGT 0.597 6 56 NPR1 4881 hgsc.bcm.edu;broad.mit.edu 37 1 153654206 153654206 + Silent SNP C C T rs148390726 TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 CATCCTTCCACGACGGGCTCC 0.582 7 112 TFCP2L1 29842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 121991692 121991692 + Silent SNP G G A rs140466557 by1000genomes TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 CTCCACTGCCGTCCCGCTTCT 0.572 16 147 FKBP7 51661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179341854 179341854 + Missense_Mutation SNP A A G rs144779588 TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 TCCAGGGCACATATCTGTCAT 0.393 50 76 NCKAP1 10787 hgsc.bcm.edu;broad.mit.edu 37 2 183829476 183829476 + Silent SNP T T C TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 TTGAGTATCTTGATTGAGAGG 0.323 7 90 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 ATAAGCATGACGACCTATGAT 0.393 45 60 SLC34A2 10568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 25677849 25677849 + Silent SNP G G A TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 TGGCCAAGGGGCTGGGCAACA 0.577 69 106 SSBP2 23635 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 80785076 80785076 + Missense_Mutation SNP G G T TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 TACCTGATTAGGTATCCTCAA 0.328 6 34 FTMT 94033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 121188111 121188111 + Silent SNP C C T TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 CGGAACAGGACGACTGGGAAA 0.582 12 136 GRIK2 2898 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 102372528 102372528 + Missense_Mutation SNP G G A TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 TGACTCAGACGTGGTGGAAAA 0.418 12 122 HECA 51696 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 139487914 139487914 + Silent SNP G G T TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 AGAAGGCAGTGGGTGCCGCAG 0.677 5 25 DOCK4 9732 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 111624387 111624387 + Missense_Mutation SNP T T C TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 GTAATGCTGATGTCTTCCGGA 0.463 10 19 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu 37 8 113504737 113504737 + Silent SNP T T C TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 TTGGCAAGGCTCTATTCCATC 0.363 9 116 GRINA 2907 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 145066754 145066754 + Missense_Mutation SNP T T A TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 TACGCCTCACTGGGCGCTCTG 0.617 25 44 ITGB1BP2 26548 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 70524875 70524875 + Missense_Mutation SNP G G A TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 AATCTCCCTGGTCAAGGCTGA 0.517 18 26 DIAPH2 1730 hgsc.bcm.edu;ucsc.edu 37 X 96396733 96396733 + Missense_Mutation SNP A A C TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 TTGTGAGGAAAAATATCGAGA 0.338 5 44 OCRL 4952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 128710473 128710473 + Missense_Mutation SNP C C G TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 CTTAGAGGCTCTGTGCCGTAT 0.403 47 7 PJA2 9867 broad.mit.edu;ucsc.edu 37 5 108717302 108717302 + Missense_Mutation SNP A A C TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 ACATGGTTTAAAACTGACATA 0.443 9 81 C12orf63 0 broad.mit.edu;ucsc.edu 37 12 97136314 97136314 + Missense_Mutation SNP C C A TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 TGCCGCTTAGCATTGGTGACT 0.348 15 21 EIF1AX 1964 broad.mit.edu;ucsc.edu 37 X 20156729 20156729 + Missense_Mutation SNP T T C TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 CGTCTGTTTTTACCTCCTTTA 0.308 37 5 CCDC69 26112 broad.mit.edu;ucsc.edu 37 5 150565607 150565607 + Nonsense_Mutation SNP G G A TCGA-HT-7609-01A-11D-2086-08 TCGA-HT-7609-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d5f5c7e-e359-4788-8718-f7fc5164a30d 8f0035fe-017d-4cf6-81b8-79b90a6214c5 TTATAGTTTCGGCTCAGAATG 0.557 11 108