Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
PAPOLA	10914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	97031339	97031339	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	TCCCTGCAAATCCTATTCCTG	0.373	33	77
HBZ	3050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	202926	202926	+	Silent	SNP	T	T	C			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	TGACCAAGACTGAGAGGACCA	0.612	24	53
SENP3	26168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7474041	7474041	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	AAAGAAAGACCGACTGGATTT	0.473	8	23
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577593	7577593	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	TGGATGGTGGTACAGTCAGAG	0.532	21	63
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578507	7578507	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	GCTGCACAGGGCAGGTCTTGG	0.577	32	30
KRT27	342574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	38936093	38936093	+	Silent	SNP	G	G	A			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	CTCCAGCCGCGCACTGAAGAG	0.483	13	42
ABCG5	64240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	44047075	44047075	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	AGATCCAACAAGCACCCCCGC	0.368	21	114
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	ATAAGCATGACGACCTATGAT	0.393	32	83
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	230668911	230668911	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	AGCTGTGCTCGAGCATCATCC	0.363	34	75
ASTE1	28990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	130732931	130732931	+	Silent	SNP	C	C	T			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	CACTATGTTCCTCTAAGTTTT	0.393	14	72
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	62813869	62813869	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	CTACTCCAAGCGTACAATGAC	0.388	7	27
GPR124	25960	hgsc.bcm.edu;broad.mit.edu	37	8	37698691	37698691	+	Silent	SNP	C	C	T			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	ATTTCCTGTGCGCCGGGCTAC	0.627	11	94
SLC26A7	115111	hgsc.bcm.edu;ucsc.edu	37	8	92364100	92364100	+	Silent	SNP	T	T	G	rs10109254	byFrequency	TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	GACCTTTGCTTTACTGGCTGC	0.343	36	125
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76890083	76890083	+	Splice_Site	SNP	A	A	C			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	TTCAGCTCTTACCTGTAAAGT	0.398	38	74
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	123196967	123196967	+	Splice_Site	SNP	A	A	T			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	ATTTCACAGTACTCTGTAGAT	0.313	12	22
BCOR	54880	broad.mit.edu;ucsc.edu	37	X	39931690	39931690	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	CACGTAACCCGCTGAGTTGGC	0.527	4	24
F5	2153	broad.mit.edu;ucsc.edu	37	1	169519050	169519050	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7610-01A-21D-2086-08	TCGA-HT-7610-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0a5d3919-f656-43ca-ab7a-e7df56b6cdbe	49080164-b5e3-47b2-a79a-784695523809	TGTATTCCTTGCCTGTCCAGG	0.428	4	36