Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
KMT2D	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	49416133	49416133	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	TAGATGCCTCGATTCTAGAAA	0.517	9	11
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	32911765	32911765	+	Missense_Mutation	SNP	A	A	C	rs80359382		TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	CTCAGATGTTATTTTCCAAGC	0.333	27	63
OR11H6	122748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	20692083	20692083	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	TTGGACAGGCGGCTCCACACA	0.478	22	88
GPATCH2L	55668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	76668100	76668100	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	AGCTCTGAGTGGTTGGTGAGG	0.488	14	60
INF2	64423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	105174321	105174321	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	GCAGAAGCTGCCATCCAACGT	0.657	20	38
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	90631838	90631838	+	Missense_Mutation	SNP	C	C	T	rs121913503		TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	ATGGGCGTGCCTGCCAATGGT	0.632	22	57
ABCA8	10351	hgsc.bcm.edu;broad.mit.edu	37	17	66914237	66914237	+	Silent	SNP	G	G	A			TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	AGAGGATCACGCGGTCTGTTT	0.453	7	80
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42791757	42791757	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	CAAGCGGCACCGGGCCCTGGT	0.612	18	40
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	151258917	151258917	+	Silent	SNP	A	A	G			TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	TAGGAAGTGAATCTGAAGACA	0.572	32	53
RNPEP	6051	hgsc.bcm.edu;broad.mit.edu	37	1	201966606	201966606	+	Silent	SNP	C	C	T			TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	TGGTCACCAACGCCAACTGGG	0.547	6	101
IL2RB	3560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	37524372	37524372	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	GGGGTGGGAGGCCCCAGGGGC	0.677	23	45
SYAP1	94056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	16774794	16774794	+	Silent	SNP	C	C	A			TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	AGAGGCAGTACGGCCCAAAAC	0.343	10	44
MORF4L2	9643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	102931856	102931856	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	GCCCCTCTCATTTTACTTCTC	0.488	52	61
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	148049222	148049222	+	Splice_Site	SNP	G	G	T			TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	CTGATGCACTGGTAAGTTTCC	0.348	20	49
SAMD4A	23034	broad.mit.edu;hgsc.bcm.edu	37	14	55236839	55236840	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HT-7681-01A-11D-2395-08	TCGA-HT-7681-10C-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	378982db-a5b2-405d-be34-30b870c8d215	16689ce9-1a6c-4702-91eb-68955024ac3e	CAGAGACACAGAAAAAAAGATT	0.416	26	99