Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count NEURL 9148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 105349295 105349295 + Missense_Mutation SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GCCGAGCGGGGTATCCCATCA 0.652 14 160 NRAP 4892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 115380449 115380449 + Missense_Mutation SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe ATCCACTTCACATCTGCCCTG 0.478 37 222 PLAC1L 219990 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 59810975 59810975 + Missense_Mutation SNP T T A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe TGGTTGATGGTCTCAGTTATC 0.393 11 56 EXPH5 23086 hgsc.bcm.edu;broad.mit.edu 37 11 108380864 108380864 + Missense_Mutation SNP G G T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe AACGATAGAGGTGTGGCTCAG 0.463 16 151 ARHGEF12 23365 hgsc.bcm.edu;broad.mit.edu 37 11 120355176 120355176 + Silent SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe CCATTCTTTGCCAAAGGCTGG 0.378 6 112 PYROXD1 79912 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 21615672 21615672 + Splice_Site SNP A A G TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe AATGTTGTTTAGTTTGATCTA 0.373 28 96 KIF21A 55605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 39761740 39761740 + Missense_Mutation SNP G G C TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe AATTCCTCCAGTTGAATCTTC 0.313 21 235 RILPL1 353116 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 123983204 123983204 + Missense_Mutation SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe AGGTCTGCCTCCAGCTCCACC 0.627 50 175 KCNK13 56659 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 90650849 90650849 + Silent SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe TTGGGGACCTGGTCAGCAGCC 0.532 25 36 DMXL2 23312 hgsc.bcm.edu;broad.mit.edu 37 15 51766595 51766595 + Missense_Mutation SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe ACACCGCCTCCAAAAACAGCA 0.368 8 103 MTFMT 123263 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 65312542 65312542 + Silent SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe CACCGTAAGTCGCCCCCTCCA 0.413 7 40 SRCAP 10847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 30732740 30732740 + Missense_Mutation SNP C C G TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe AGTGCCAGCTCCGACTCCTGC 0.612 42 107 SRCAP 10847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 30734516 30734516 + Silent SNP C C G TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GGCCTCTTCTCAAGCTGGTCC 0.602 93 234 C16orf46 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 81094882 81094882 + Missense_Mutation SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe TCCTGCTTGGCCTTTGGGAGA 0.498 19 157 ACKR6 83394 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 6381927 6381927 + Silent SNP T T A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe CCTGGTTGGCTCGCTCGATGA 0.632 12 64 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GCACAAACACGCACCTCAAAG 0.542 20 9 CCL25 6370 hgsc.bcm.edu;ucsc.edu 37 19 8122747 8122747 + Nonstop_Mutation SNP A A G TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe gtccaagtttagcaatcccat 0.463 12 100 MUC16 94025 hgsc.bcm.edu;broad.mit.edu 37 19 9087885 9087885 + Silent SNP A A G TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe TAGTCTCTCCAGGAGCTGTCA 0.507 4 70 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9089322 9089322 + Silent SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GACTCTCTGACGATTCTGAAG 0.498 51 269 DOCK6 57572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 11347158 11347158 + Silent SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe CCTGCTCCACGTTGCCCTCGC 0.647 3 10 ATAD3C 219293 hgsc.bcm.edu;broad.mit.edu 37 1 1386075 1386075 + Silent SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe TGTCAAAGGACGCCCTGAATC 0.642 5 22 OBSCN 84033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 228529180 228529180 + Missense_Mutation SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GGGGGATGACCGCGCCTTCGA 0.637 20 33 JAG1 182 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 10624439 10624439 + Silent SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe TTCTGCAGTCGGGCCCAGCAA 0.498 24 55 SPTLC3 55304 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 13134724 13134724 + Missense_Mutation SNP A A G TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GGGATTCATTATCTATGGCAA 0.428 9 65 PROKR1 10887 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 68873428 68873428 + Missense_Mutation SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GCTGGCCATCGCCATTGACAG 0.592 26 120 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe ATAAGCATGACGACCTATGAT 0.393 37 98 MLPH 79083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 238449504 238449504 + Silent SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe ACCCTGGGGACCCCGTCCAGT 0.607 8 31 RAB17 64284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 238483770 238483770 + Splice_Site SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GTAGCTCTTGGGCTGTGAACA 0.667 20 35 ITIH4 3700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52850942 52850942 + Missense_Mutation SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe CTTGTACGCAGAGCTTCTTCG 0.577 37 277 PPP2R3A 5523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 135825112 135825112 + Missense_Mutation SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe TGCCGCTGAGGAGTATGAGAC 0.463 35 78 ATR 545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 142224106 142224106 + Missense_Mutation SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GCACTGACTCCGGCCACTCCA 0.388 39 322 HSD17B4 3295 hgsc.bcm.edu;broad.mit.edu 37 5 118829578 118829578 + Missense_Mutation SNP G G C TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe TCCTGAGGCAGTCAAGGCTAA 0.473 5 72 RAPGEF6 51735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 130825275 130825275 + Missense_Mutation SNP T T C TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GCAAGATGAGTATTATTCCTC 0.269 10 18 PCDHA11 56138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140249832 140249832 + Missense_Mutation SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe AGGTGTCAACGGACAGGTGAC 0.602 18 125 FAT2 2196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 150924794 150924794 + Missense_Mutation SNP C C A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe AAACTGCAAGCTTTTGTCAAG 0.483 9 43 ITPR3 3710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 33656101 33656101 + Missense_Mutation SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe ACCAAGCACCGGCTCTTCACC 0.597 48 138 SLC17A5 26503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 74354177 74354177 + Missense_Mutation SNP C C A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe TCTGGACACGCCTTGGAAGTT 0.348 13 46 ENPP3 5169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 131996232 131996232 + Missense_Mutation SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GTGGCTGACAGCAATGTATCA 0.388 13 49 MAP7 9053 hgsc.bcm.edu;ucsc.edu 37 6 136709623 136709623 + Missense_Mutation SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe TTCCATTGTGCGCCGTACAAC 0.498 16 52 ABCA13 154664 hgsc.bcm.edu;broad.mit.edu 37 7 48313892 48313892 + Missense_Mutation SNP T T G TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe TTCAAAATATTTGGCTTCATT 0.299 7 65 ANK1 286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 41552258 41552258 + Missense_Mutation SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GAAGTACAGCGGGAAGTCGGT 0.602 17 90 ZNF484 83744 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 95610656 95610656 + Missense_Mutation SNP C C T rs139334933 TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GAAGACAACACGACTTAAAGG 0.368 44 74 TUBB4B 10383 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 140137441 140137441 + Missense_Mutation SNP G G C TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe CTGTGAACATGGTCCCGTTTC 0.652 6 43 MCTS1 28985 hgsc.bcm.edu;broad.mit.edu 37 X 119739938 119739938 + Missense_Mutation SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe TTACAGCCATGAACATATAGA 0.299 4 60 GRIA3 2892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 122538740 122538740 + Missense_Mutation SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe ATATGGAACGGCATGGTTGGG 0.378 44 337 DCAF12L2 340578 hgsc.bcm.edu;broad.mit.edu 37 X 125299120 125299120 + Missense_Mutation SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe CCGTACCTTGCGGTTGCTGGG 0.637 5 64 GABRA3 2556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 151336862 151336862 + Silent SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe GGCTGTCCTGCACGTAGGTGG 0.522 93 253 LAMC3 10319 broad.mit.edu;ucsc.edu 37 9 133932363 133932363 + Missense_Mutation SNP C C T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe CCGGCCAGGGCTTTCCCCGCC 0.607 21 139 EIF2B4 8890 broad.mit.edu;ucsc.edu 37 2 27591981 27591981 + Missense_Mutation SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe TTGGCTCGACGCTCAGCCCGA 0.602 67 119 GDPD2 54857 broad.mit.edu;ucsc.edu 37 X 69652260 69652260 + Missense_Mutation SNP G G A TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe CACCACCAACGACTGCCAGCT 0.512 52 117 OR4A16 81327 broad.mit.edu;hgsc.bcm.edu 37 11 55110739 55110740 + Frame_Shift_Ins INS - - A rs77509752 TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe ATCCTGATGTGAAAAAAACATT 0.416 18 60 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76939638 76939639 + Frame_Shift_Ins INS - - T TCGA-HT-7689-01A-11D-2253-08 TCGA-HT-7689-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx b95cd446-0fed-4da2-892f-24b39d073ab4 77467f98-3e82-4ce7-abbe-8e69e7a77dbe AAAATTTAACATAACTGGAGTT 0.371 64 129