Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
TAF5	6877	hgsc.bcm.edu;broad.mit.edu	37	10	105145230	105145230	+	Silent	SNP	C	C	T	rs145434074		TCGA-HT-7691-01A-11D-2253-08	TCGA-HT-7691-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd30f39-5200-4c80-957d-a4f3898dd711	2891bd1f-d811-43da-b76f-60eb95191d34	TGTCAGGGGGCCATGACCGAG	0.413	3	45
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	23908606	23908606	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7691-01A-11D-2253-08	TCGA-HT-7691-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd30f39-5200-4c80-957d-a4f3898dd711	2891bd1f-d811-43da-b76f-60eb95191d34	AAACAATAATCAACTAAAAGT	0.373	11	24
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	76120700	76120700	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7691-01A-11D-2253-08	TCGA-HT-7691-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd30f39-5200-4c80-957d-a4f3898dd711	2891bd1f-d811-43da-b76f-60eb95191d34	AAGGCCACCAGCAGCAGCAGC	0.672	4	23
IL12RB1	3594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	18183118	18183118	+	Silent	SNP	C	C	T	rs141737618		TCGA-HT-7691-01A-11D-2253-08	TCGA-HT-7691-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd30f39-5200-4c80-957d-a4f3898dd711	2891bd1f-d811-43da-b76f-60eb95191d34	CCGTGCCAGGCGCCAGCCCTT	0.587	10	21
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140572688	140572688	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7691-01A-11D-2253-08	TCGA-HT-7691-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd30f39-5200-4c80-957d-a4f3898dd711	2891bd1f-d811-43da-b76f-60eb95191d34	GGTGATGAAGGCATGATATAT	0.498	63	171
BRAT1	221927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	2583295	2583295	+	Silent	SNP	C	C	A			TCGA-HT-7691-01A-11D-2253-08	TCGA-HT-7691-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd30f39-5200-4c80-957d-a4f3898dd711	2891bd1f-d811-43da-b76f-60eb95191d34	GCAGACAGGCCACGCGGGGAC	0.701	9	72
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu	37	X	79932312	79932312	+	Silent	SNP	G	G	A			TCGA-HT-7691-01A-11D-2253-08	TCGA-HT-7691-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd30f39-5200-4c80-957d-a4f3898dd711	2891bd1f-d811-43da-b76f-60eb95191d34	CTGAAAACATGGTATCAAATT	0.443	6	103
SLC6A17	388662	broad.mit.edu;ucsc.edu	37	1	110740737	110740737	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7691-01A-11D-2253-08	TCGA-HT-7691-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd30f39-5200-4c80-957d-a4f3898dd711	2891bd1f-d811-43da-b76f-60eb95191d34	CTGGGCCATGGCACTCCTGAT	0.657	4	35
CTNS	1497	broad.mit.edu;ucsc.edu	37	17	3560060	3560060	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7691-01A-11D-2253-08	TCGA-HT-7691-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	efd30f39-5200-4c80-957d-a4f3898dd711	2891bd1f-d811-43da-b76f-60eb95191d34	CCTCACGCTGATCATCATCGT	0.592	26	93