Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count FBXO18 84893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 5979128 5979128 + Missense_Mutation SNP G G A TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e GCGGAGCAGCGCATCGGGCCC 0.622 13 32 FGFR2 2263 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 123256167 123256167 + Missense_Mutation SNP G G T TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e CATCCCGGGTGGCCTCCGGGC 0.532 59 78 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 1270916 1270916 + Missense_Mutation SNP C C T TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e ACGGCCACCCCGTCCTCCACC 0.642 52 217 SAA4 6291 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 18253209 18253209 + Missense_Mutation SNP C C T TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e GACCCTGGAACGGCTGCAACC 0.488 19 32 OR5A1 219982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 59211422 59211422 + Missense_Mutation SNP G G A TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e AGCCCTTTTCGTGTACTTGCG 0.537 134 187 SUV420H1 51111 hgsc.bcm.edu;broad.mit.edu 37 11 67941292 67941292 + Missense_Mutation SNP T T C TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e TGCAACTATTTTGGCTCCATT 0.299 6 76 PPP6R3 55291 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 68337357 68337357 + Silent SNP T T C TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e TAATTTGTTATTAAAACATGT 0.373 82 96 SHBG 6462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7535330 7535330 + Silent SNP T T C TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e ACCTCCAAGATCAAGTAAAGG 0.542 21 144 TNFRSF13B 23495 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 16852148 16852148 + Missense_Mutation SNP C C T TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e CTCCTGAGCTCTGGTGGAAGG 0.522 87 128 OR7D2 162998 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9296887 9296887 + Silent SNP C C T TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e CTGTGGCCTCCTGGTTTTTGT 0.478 19 227 PPAN 56342 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 10224314 10224314 + Nonsense_Mutation SNP A A T TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e CACAGGTGCCAAGTCCTGCCC 0.617 15 30 FDX1L 112812 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 10421614 10421614 + Missense_Mutation SNP C C T TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e GCTTCACAGGCCCCTAGGGGT 0.617 8 42 NES 10763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 156642351 156642351 + Silent SNP T T C TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e TCAGGGTTTCTTTTTCCAAAG 0.468 6 45 HMCN1 83872 hgsc.bcm.edu;broad.mit.edu 37 1 185964003 185964003 + Missense_Mutation SNP G G T TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e TGGTCAAAGAGTGGATATTCC 0.413 5 88 OR2C3 81472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 247695072 247695072 + Missense_Mutation SNP C C T TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e AGAGACACCACAGCCACGTGG 0.542 46 94 SLC4A11 83959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 3209830 3209830 + Silent SNP G G A TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e CCATGGCACCGCTGACGGCCC 0.617 8 72 CSRP2BP 57325 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 18168088 18168088 + Silent SNP G G A TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e CATTCTTTCTGAGGCTCCGGC 0.413 62 72 CNBD2 140894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 34618499 34618499 + Missense_Mutation SNP T T C TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e ACCCCAGAAATACCTCCCCCC 0.463 166 211 SLC5A3 6526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 35468232 35468232 + Silent SNP A A G TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e CCCCTAAGAAAGAAGCCCTGA 0.453 57 100 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e ATAAGCATGACGACCTATGAT 0.393 19 69 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178936095 178936095 + Missense_Mutation SNP A A G TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e ATCACTGAGCAGGAGAAAGAT 0.363 13 41 BNIP1 662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 172587005 172587005 + Silent SNP G G A TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e GGATCAGCAGGATGATGGCCC 0.562 108 158 SPATA31E1 286234 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 90501843 90501843 + Missense_Mutation SNP G G A TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e TGGAGGGGTGGGAAAGCCCAC 0.572 22 21 PTX3 5806 broad.mit.edu;hgsc.bcm.edu 37 3 157154729 157154731 + In_Frame_Del DEL CTC CTC - TCGA-HT-7692-01A-12D-2253-08 TCGA-HT-7692-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx eaa6dbfa-6641-4162-a34d-6718781793bc 4a5299fe-a61f-4e0d-9e89-bc7874cff10e AGCAATGCATCTCCTTGCGATTC 0.493 64 96