Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count NTF3 4908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 5603797 5603797 + Silent SNP C C T TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 GGAAACGGTACGCGGAGCATA 0.602 40 133 ATN1 1822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 7050146 7050146 + Silent SNP C C T TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 TGCTTCCTCACCCTCTGCACG 0.567 16 59 TMTC2 160335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 83379779 83379779 + Missense_Mutation SNP A A G TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 TCCAAGACTGACCACATCCCT 0.458 43 83 PTPN11 5781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 112915523 112915523 + Missense_Mutation SNP A A G rs28933386 TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 CATCAATGCAAATATCATCAT 0.378 15 56 IL16 3603 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 81571959 81571959 + Silent SNP C C T TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 GCCTCCTTCCCTGTGCAGCCA 0.612 19 29 KCNH6 81033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 61621618 61621618 + Missense_Mutation SNP C C T TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 AGATGCAGCCCCTCCCCTGAG 0.612 22 37 CD300A 11314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 72473594 72473594 + Silent SNP C C T TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 GCTCCTCTCCCTGCTGGCATT 0.512 22 100 MAPK4 5596 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 48190668 48190668 + Missense_Mutation SNP C C T TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 CGACCTGGCACGCCTGCTGGA 0.612 12 90 ABCA7 10347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 1056395 1056395 + Missense_Mutation SNP C C T TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 CAACGCAATCCTCCGTGCTCA 0.612 28 81 AMPD2 271 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 110168798 110168798 + Missense_Mutation SNP C C G TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 GCCAGACATCCTGCTTCGGGC 0.632 12 52 FCRL3 115352 hgsc.bcm.edu;broad.mit.edu 37 1 157665876 157665876 + Silent SNP G G A TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 GGCTGTGAACGTTATCAGCTG 0.532 9 91 C20orf26 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 20271009 20271009 + Nonsense_Mutation SNP G G A TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 AACTCCCTTGGAGGTACAAAT 0.348 19 54 ACOT8 10005 hgsc.bcm.edu;broad.mit.edu 37 20 44472287 44472287 + Silent SNP C C G TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 GGTGAGGCAGCAGTGCAGTGC 0.597 18 58 ACVR2B 93 hgsc.bcm.edu;ucsc.edu 37 3 38518942 38518942 + Missense_Mutation SNP G G A TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 CATCGAGCTCGTGAAGAAGGG 0.612 4 34 GRID2 2895 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 94436513 94436513 + Missense_Mutation SNP G G A TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 ATCAACCGAAGCAATGGATCG 0.473 21 100 PDE4D 5144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 58489358 58489358 + Missense_Mutation SNP C C T TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 AAGTCATCTCCGTGTCTGAAA 0.398 8 31 GPR98 84059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 90119413 90119413 + Splice_Site SNP G G A TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 AACCAGAAAAGGTAAGAAATG 0.363 10 13 ATP10B 23120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 160061402 160061402 + Missense_Mutation SNP C C T TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 GATGGTGCAACGTCGGAACAC 0.507 28 51 TRIM15 89870 hgsc.bcm.edu;broad.mit.edu 37 6 30131720 30131720 + Missense_Mutation SNP G G A TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 CGAGGAGCACGGCGAGAAGAT 0.632 3 53 ABCA13 154664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 48506641 48506641 + Splice_Site SNP C C T TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 AAACCCACGCCAGTAAGTGTC 0.473 30 133 ABCB1 5243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 87183111 87183111 + Missense_Mutation SNP A A G TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 TTCCCCTGAGAGGACCAAGGT 0.393 25 56 RNF208 727800 broad.mit.edu;ucsc.edu 37 9 140114928 140114928 + Missense_Mutation SNP G G A TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 GCAGGTGCACGCGGCCCCACA 0.706 3 15 PCDHB1 29930 broad.mit.edu;ucsc.edu 37 5 140432731 140432731 + Missense_Mutation SNP G G A TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 AATGACAATCGTCCAATGATC 0.502 25 48 FCHO1 23149 broad.mit.edu;ucsc.edu 37 19 17895689 17895689 + Silent SNP G G A TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 TGCTGCCTGTGGGGGAGCCTG 0.652 20 138 TAF1 6872 broad.mit.edu;ucsc.edu 37 X 70621406 70621406 + Missense_Mutation SNP G G T TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 GGTGCCATTGGACACATGAGG 0.458 13 15 KRT20 54474 broad.mit.edu;ucsc.edu 37 17 39041184 39041184 + Missense_Mutation SNP A A T TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 CACCTTTTCTAGGTAGCTCGC 0.542 6 57 WDR78 79819 broad.mit.edu;hgsc.bcm.edu 37 1 67371036 67371037 + Frame_Shift_Ins INS - - A TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 CTAATAGACTTCTTTGGTTGTG 0.322 16 16 PHLDB2 90102 broad.mit.edu;hgsc.bcm.edu 37 3 111604041 111604042 + Frame_Shift_Ins INS - - CAGA TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 TGCTGGAGAGTCAGACAGAGTT 0.515 23 81 NCOR2 9612 broad.mit.edu;hgsc.bcm.edu 37 12 124817682 124817683 + Frame_Shift_Ins INS - - C TCGA-HT-7854-01A-11D-2253-08 TCGA-HT-7854-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 041fdd6c-8bbc-4966-8ca7-8a9099b9031f c943a4d4-9cd4-4c62-8b27-ad7bf4f1b829 GTACCTGGGCTCCGTCTGTTCC 0.644 32 86