Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
PLA2G12B	84647	hgsc.bcm.edu;broad.mit.edu	37	10	74700992	74700992	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	GAGACACCATCGGAATTTTGC	0.502	12	181
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	58564252	58564252	+	Splice_Site	SNP	C	C	A			TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	TAGGCCACCCCTGAAAGAAAG	0.393	6	58
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578		TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	GTGGGGGCAGCGCCTCACAAC	0.652	37	16
CYTH1	9267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	76694917	76694917	+	Silent	SNP	C	C	T			TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	GGAGCTCCTCCGGCAGGTCTC	0.488	44	221
DSC3	1825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	28574169	28574169	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	TTCTGCTAATGTAATAAATTT	0.388	13	54
IPO13	9670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	44415398	44415398	+	Missense_Mutation	SNP	C	C	G	rs138977771	byFrequency	TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	CTCACTGGCTCTCAGCATGAT	0.587	17	31
GZF1	64412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	23345745	23345745	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	AAATATACGAGAAGACTCCGA	0.532	25	53
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	41710291	41710291	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	CATTGGTCGAATGCTTGCAGG	0.403	11	23
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	30416522	30416522	+	Silent	SNP	C	C	T	rs147400483	byFrequency	TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	ATGGGCATTGCGCCAATGGGG	0.582	24	59
SEC14L4	284904	hgsc.bcm.edu;broad.mit.edu	37	22	30886219	30886219	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	TAGGTGTTGTCGAAGCGCAGG	0.592	6	76
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	45646937	45646937	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	CTTAACAAAACTTCTGAACAG	0.428	26	61
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	T	rs121913499		TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	TAAGCATGACGACCTATGATG	0.398	18	73
FYB	2533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	39203057	39203057	+	Silent	SNP	C	C	T			TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	TGTTATATTTCGCCATGAGGG	0.433	37	60
HOXA1	3198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	27134952	27134952	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	TCCGATGCGGGGGAGCGACAG	0.552	36	100
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	149481078	149481078	+	RNA	SNP	G	G	A			TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	TGGAGAGCTGGGCAGCTGTGT	0.647	9	15
CD300LB	124599	broad.mit.edu;ucsc.edu	37	17	72521999	72521999	+	Silent	SNP	C	C	T			TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	TCACAGTGAACGTGCGGTCTT	0.517	68	161
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76939540	76939540	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HT-7858-01A-11D-2395-08	TCGA-HT-7858-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	59cdcd9b-04e6-43cb-9f34-562105029994	10322624-d067-43ec-8617-7c45e71c9c3f	ATGAGCCTTCTTAATATCAGC	0.348	176	103