Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR4C16 219428 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55339961 55339961 + Missense_Mutation SNP C C T TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf GGCTGTTGACCGCTATGTGGA 0.517 106 138 OR4D6 219983 hgsc.bcm.edu;broad.mit.edu 37 11 59224594 59224594 + Missense_Mutation SNP G G A TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf TGTGAGTCCCGCCTACACACT 0.458 7 115 ZNF259 8882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 116657243 116657243 + Missense_Mutation SNP T T C TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf TGCAGGCTGGTCCTGCTCCAG 0.478 23 56 FKBP4 2288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 2910516 2910516 + Silent SNP G G A TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf CTGAGGAGGAGAACAAGGTGA 0.557 35 206 TESPA1 9840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 55356531 55356531 + Missense_Mutation SNP G G A TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf CTTGGGGTTCGAATCCAGAGT 0.507 33 37 SLC39A9 55334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 69908908 69908908 + Missense_Mutation SNP G G A TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf CTATATTGGTGTTTCCCTCGT 0.483 31 205 LTK 4058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 41796600 41796600 + Silent SNP G G A TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf GCTCAGGCTCGTGCTGCCAAC 0.592 7 71 SRRM2 23524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2816330 2816330 + Missense_Mutation SNP G G A TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf ACCCGCCGTCGTTCAAGGTCT 0.582 64 77 RTN4RL1 146760 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 1840572 1840572 + Missense_Mutation SNP C C T TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf AGCTTGTTGCCGTGGAGAAAC 0.602 8 66 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf GCACAAACACGCACCTCAAAG 0.542 14 18 LRRC37A3 374819 hgsc.bcm.edu;broad.mit.edu 37 17 62856443 62856443 + Missense_Mutation SNP T T C TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf GTGGGTTAAGTCTTTCCATCT 0.458 22 186 USH1G 124590 hgsc.bcm.edu;broad.mit.edu 37 17 72916511 72916511 + Missense_Mutation SNP G G C TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf CCGCCTCGCGGAAGGCCTTGT 0.672 4 72 CNDP1 84735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 72201914 72201914 + Missense_Mutation SNP A A T TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf TGGATCCCAAACTCGGGAGAA 0.537 13 39 MAST3 23031 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 18260436 18260436 + Missense_Mutation SNP C C T TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf TTCGATGAGCCGCAGGAGGAG 0.667 8 33 AHDC1 27245 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 27875777 27875777 + Silent SNP C C T rs151218177 TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf TGGCTGAGGGCGGGGGCACCA 0.672 60 65 YIPF1 54432 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 54331952 54331952 + Missense_Mutation SNP C C G TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf GTTATCCTCACGAACAGCTGG 0.483 44 69 DIDO1 11083 hgsc.bcm.edu;broad.mit.edu 37 20 61511961 61511961 + Missense_Mutation SNP C C T TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf ATATTCTCTTCTGGAAACGGA 0.612 17 209 USP16 10600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 30419419 30419419 + Silent SNP T T C TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf AGATTCTGAATGATAGTCATA 0.378 25 135 REG1A 5967 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 79348733 79348733 + Missense_Mutation SNP C C T TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf ATCAGCTGCCCAGAAGGCACC 0.527 63 281 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf ATAAGCATGACGACCTATGAT 0.393 49 64 PDHA2 5161 hgsc.bcm.edu;broad.mit.edu 37 4 96761529 96761529 + Silent SNP A A G TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf AATTGAAGGCAGATCAGCTGT 0.537 7 136 NEUROG2 63973 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 113436146 113436146 + Nonsense_Mutation SNP C C T TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf CGGTGAGTGCCCAGATGTAGT 0.711 9 39 SPINK5 11005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 147484546 147484546 + Missense_Mutation SNP A A G TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf AGCAAAGGCTAAAAGAGAAGC 0.328 4 34 UBE3D 90025 hgsc.bcm.edu;ucsc.edu 37 6 83754360 83754360 + Silent SNP G G C rs76697527 byFrequency TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf TCGGCAGTGGGAGCACCCTGA 0.403 52 89 SYNE1 23345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 152697565 152697565 + Missense_Mutation SNP T T C TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf TTGAGGTATATCAAAACACTT 0.358 45 46 ITGB8 3696 hgsc.bcm.edu;broad.mit.edu 37 7 20441726 20441726 + Missense_Mutation SNP A A G TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf TCTTGTCCATATCACCATGGA 0.363 10 139 AVL9 23080 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 32599062 32599062 + Missense_Mutation SNP G G A TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf CATGCCCCTGGCCATCTTCAC 0.388 29 44 PPP1R3F 89801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 49142309 49142309 + Missense_Mutation SNP C C T TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf TCTGACGTTCCGATGACTGGC 0.577 23 44 SCN2A 6326 broad.mit.edu;ucsc.edu 37 2 166179921 166179921 + Missense_Mutation SNP A A G TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf CATGAATGGGAAGATGCATAG 0.617 6 46 ZNF319 57567 broad.mit.edu;ucsc.edu 37 16 58030901 58030901 + Silent SNP C C T TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf GCCGCTCGGCCGCGCCGGGCA 0.657 14 41 STXBP5L 9515 broad.mit.edu;hgsc.bcm.edu 37 3 120628568 120628569 + In_Frame_Ins INS - - CGC TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf GTTCTCAGAGAGGAAATTCAGG 0.48 17 30 PLCH1 23007 broad.mit.edu;hgsc.bcm.edu 37 3 155215187 155215187 + Frame_Shift_Del DEL T T - TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf AGCTTCATGGTTTTCCTTCGG 0.468 56 81 TP53 7157 broad.mit.edu;hgsc.bcm.edu 37 17 7577076 7577077 + Frame_Shift_Ins INS - - C TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf TTGCGGAGATTCTCTTCCTCTG 0.569 33 43 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76939673 76939674 + Frame_Shift_Ins INS - - T TCGA-HT-7884-01B-11D-2395-08 TCGA-HT-7884-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e8c13d36-7c29-4e40-8f16-98ea5d746d85 3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf GTCTCAATCAGTTTTTTTGCCT 0.366 71 136