Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count DLG5 9231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 79601943 79601943 + Missense_Mutation SNP G G A TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 ATGGTGGATCGCCTCAAACCT 0.652 58 69 B4GALNT3 283358 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 657235 657235 + Missense_Mutation SNP G G C TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 TGCACAAGCAGAATGAGGAGG 0.622 21 29 B4GALNT3 283358 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 665815 665815 + Silent SNP C C T rs150429681 byFrequency TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 AAGGCCAGCGCGTGGTGCGGC 0.622 38 60 RNF17 56163 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 25399896 25399896 + Missense_Mutation SNP G G A TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 ATTTGGTACCGAGCAAAAGTT 0.378 21 89 BEGAIN 57596 hgsc.bcm.edu;broad.mit.edu 37 14 101005290 101005290 + Silent SNP C C T TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 CCTCCTCGGCCGCGCTGTCAG 0.726 11 31 CLUH 23277 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 2595751 2595751 + Missense_Mutation SNP C C T TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 CTCCATCACCCCGTGCAGCAC 0.701 11 63 FASN 2194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 80051592 80051592 + Silent SNP G G A TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 TCTCAGAGCCGCTCACGCCCA 0.657 41 68 OMA1 115209 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 58999969 58999969 + Missense_Mutation SNP T T C TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 GGCATCTTTCTCAGTTAGCAT 0.338 19 4 NTRK1 4914 hgsc.bcm.edu;broad.mit.edu 37 1 156841489 156841489 + Silent SNP G G A TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 AGAACGTGACGTGCTGGGCAG 0.592 9 114 IL1RL1 9173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 102959762 102959762 + Missense_Mutation SNP T T A TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 CTAGACATGGTTTTAAGAATA 0.453 45 139 TFCP2L1 29842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 122005806 122005806 + Silent SNP G G A TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 GCTGGGTCGGGCTGGCCCTGG 0.527 4 38 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 ATAAGCATGACGACCTATGAT 0.393 30 37 MSMO1 6307 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 166263064 166263064 + Missense_Mutation SNP A A G TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 GCCTATAATGAAAAGAGGAAG 0.343 24 28 PTK2B 2185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 27310644 27310644 + Silent SNP G G A TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 AGTTCACAGGGCCCCCACAGA 0.542 40 65 ARR3 407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 69500075 69500075 + Silent SNP G G T TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 AAGAGCTGCTGGGGATCCTGG 0.502 51 93 CTAG2 30848 hgsc.bcm.edu;broad.mit.edu 37 X 153881577 153881577 + Silent SNP C C T rs140132753 TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 TTCCATCCTGCGCAGAAGCGG 0.711 19 59 POLR3K 51728 broad.mit.edu;ucsc.edu 37 16 97470 97470 + Missense_Mutation SNP T T C TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 ATTGCAGCACTTGTAGAAGGT 0.557 45 63 PMPCB 9512 broad.mit.edu;hgsc.bcm.edu 37 7 102948108 102948109 + Frame_Shift_Del DEL AA AA - rs141254128 TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 ATGCACACACAAAGGAGAAATA 0.396 10 41 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42793215 42793218 + Frame_Shift_Del DEL CAGT CAGT - TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 GAGAAGTAGACAGTCAGGCGCTAC 0.667 28 59 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42796554 42796555 + Frame_Shift_Del DEL TG TG - TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 CCACGAGCTCTGTAGCTCTAGG 0.703 11 46 MYH7B 57644 broad.mit.edu;hgsc.bcm.edu 37 20 33583356 33583358 + In_Frame_Del DEL AGG AGG - TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 AAAGCTGAGAAGGAGAAGCAAGC 0.645 19 28 NOTCH1 4851 broad.mit.edu 37 9 139413070 139413072 + In_Frame_Del DEL AGA AGA - TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 CACTCGCAGTAGAAGGAGGCCAC 0.655 8 43 CIC 23152 broad.mit.edu 37 19 42791207 42791208 + Frame_Shift_Del DEL AG AG - TCGA-HT-8012-01A-11D-2395-08 TCGA-HT-8012-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1731d809-8fde-4539-82ab-4cdf461abb88 c2b420d7-bb63-411d-979d-d5b9bd30ebc3 CAGGTGGGACAGGGAGTGCTGA 0.649 8 102