Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ZNF438 220929 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 31134429 31134429 + Missense_Mutation SNP C C G TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb TGACAACGACCACATTTGATT 0.393 29 63 ZNF215 7762 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 6977476 6977476 + Missense_Mutation SNP C C T TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb ACAAACCTTACTAAGCATCAA 0.408 7 32 HTR3A 3359 hgsc.bcm.edu;broad.mit.edu 37 11 113856763 113856763 + Missense_Mutation SNP C C T TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb CTCTTTGTGGCGCTTGCCAGA 0.527 16 306 MON2 23041 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 62986483 62986483 + Missense_Mutation SNP A A G TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb CCTTTTAAGGATTTCATGCAG 0.393 28 45 SETD3 84193 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 99865219 99865219 + Missense_Mutation SNP C C T TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb CCAGCCTCCTCCTCGAGGTTT 0.532 70 98 ERN2 10595 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 23703565 23703565 + Missense_Mutation SNP G G A TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb TTTGCCTGGCGATAAAGACTG 0.612 55 78 OR1A2 26189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 3100860 3100860 + Silent SNP A A G TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb TTCTCCTGGGAGTTACTAGTC 0.398 57 70 KIAA0753 9851 hgsc.bcm.edu;broad.mit.edu 37 17 6526324 6526324 + Missense_Mutation SNP G G C TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb GCAGGAAGTGGATGCTCCCCT 0.522 4 63 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb GCACAAACACGCACCTCAAAG 0.542 10 13 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577545 7577545 + Missense_Mutation SNP T T C TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb CTCCGGTTCATGCCGCCCATG 0.577 30 56 SLC25A52 147407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 29340011 29340011 + Missense_Mutation SNP G G A TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb ACTGTGAGTCGTTGCGGTAGG 0.453 8 66 KANK4 163782 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 62728946 62728946 + Missense_Mutation SNP C C T TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb GCTGGAGACGCGGAACCACTC 0.562 17 14 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 237730050 237730050 + Missense_Mutation SNP G G A TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb TCAGATGAACGTGCCTTTGCC 0.527 96 137 DBNDD2 55861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 44037441 44037441 + Splice_Site SNP C C A TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb TGATCCGCAGCCCCCATAGGT 0.517 17 21 RGPD3 653489 hgsc.bcm.edu;broad.mit.edu 37 2 107041183 107041183 + Silent SNP C C T TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb TCCCCAAGCCCCTTTCTTTCC 0.378 199 315 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179443923 179443923 + Missense_Mutation SNP C C T TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb TTTTGGCAATCGTACACTATA 0.443 42 56 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb ATAAGCATGACGACCTATGAT 0.393 34 37 POLQ 10721 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 121158888 121158888 + Missense_Mutation SNP C C T TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb CAAATATCTACGCCTTCCCAA 0.328 19 32 ESYT3 83850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 138192428 138192428 + Missense_Mutation SNP G G A TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb CTCACAGTGCGCTATGTGTGT 0.562 65 99 SMIM19 114926 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 42401645 42401645 + Silent SNP C C T TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb TGATGGGTGACGATGGTTCTA 0.433 43 113 RBM12B 389677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 94745679 94745679 + Missense_Mutation SNP T T C TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb TGGCCTATCATTTAGATCTTT 0.378 23 31 ITIH6 347365 hgsc.bcm.edu;broad.mit.edu 37 X 54784549 54784549 + Missense_Mutation SNP A A G TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb GACCTTGGGCACCAAGGCTGG 0.532 6 73 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76939235 76939235 + Nonsense_Mutation SNP C C A TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb TTGGCAGGTTCATATTGAGGT 0.383 123 184 PGK1 5230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 77380495 77380495 + Missense_Mutation SNP C C T TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb GGAACCAAAGCTCTCATGGAT 0.493 12 71 MAMLD1 10046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 149638129 149638129 + Missense_Mutation SNP T T A TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb ACCCTTGCAATGGGCCCAGGT 0.517 18 144 IL9R 3581 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 155234153 155234153 + Missense_Mutation SNP A A G TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb GACCTGGAGCATCAGTCCTGC 0.547 10 77 STK32C 282974 broad.mit.edu;ucsc.edu 37 10 134021578 134021578 + Missense_Mutation SNP T T C TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb TTCCGCCTCGTCCTCCACAGG 0.706 3 32 CNTNAP2 26047 broad.mit.edu;hgsc.bcm.edu 37 7 146829342 146829342 + Frame_Shift_Del DEL T T - TCGA-HT-8013-01A-11D-2395-08 TCGA-HT-8013-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 590efe82-cb5a-4e5e-943c-a8ebb1033776 da88f82c-7da0-4aec-97b0-11132dfb0ebb TACAGGGAAATTTGAGCTTTT 0.428 64 53