Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count NTN4 59277 hgsc.bcm.edu;broad.mit.edu 37 12 96181099 96181099 + Missense_Mutation SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad AGTCAGATCCGTGTTCTCACT 0.537 11 42 ACADS 35 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 121176335 121176335 + Splice_Site SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad GGTCCCCACAGCAAACCCTGG 0.682 10 36 F7 2155 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 113770051 113770051 + Missense_Mutation SNP C C T TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad GGGCACCAAGCGCTCCTGTCG 0.617 8 27 KCNK10 54207 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 88652226 88652226 + Missense_Mutation SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad CCCTTCAGGCGCAGGTTGTTG 0.607 19 42 CACNG3 10368 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 24373167 24373167 + Missense_Mutation SNP C C T TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad GGCCAACAGGCGCACCACGCC 0.562 13 43 ADCY7 113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 50325794 50325794 + Missense_Mutation SNP C C T TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad ACCCAGTGTCCGGGTGGGGCT 0.652 12 35 CBFA2T3 863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 88967963 88967963 + Missense_Mutation SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad GATGCGGCAGGCGGTGGGGGC 0.701 17 38 GSDMB 55876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 38073447 38073447 + Silent SNP C C T TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad TTCTCTTCTCCCCCACCAGAT 0.483 31 84 SHD 56961 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 4284902 4284902 + Splice_Site SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad AGAAACAGCCGTGAGTGGGGA 0.587 26 43 IQGAP3 128239 hgsc.bcm.edu;broad.mit.edu 37 1 156499981 156499981 + Silent SNP G G C TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad GGTTCCGCAGGACGCGCCGCT 0.647 6 11 RXRG 6258 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 165389159 165389159 + Silent SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad GAGATCCGGGGCTGGTGGATG 0.522 12 39 H3F3A 3020 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 226252059 226252059 + Missense_Mutation SNP C C T TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad TACCATGGCTCGTACAAAGCA 0.498 13 21 SPATA2 9825 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 48522793 48522793 + Missense_Mutation SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad AAGCACATCCGGGCTGCCGTG 0.637 32 69 CBLN4 140689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 54579018 54579018 + Silent SNP C C T TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad AGAAGGCGACCTTGGAGTTGG 0.637 36 109 SRBD1 55133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 45620175 45620175 + Silent SNP C C T TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad CTGCAATTTTCTCCATTCCTT 0.403 26 40 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179443857 179443857 + Missense_Mutation SNP C C G TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad GAGATAGTTCCTTCCTTGGTG 0.443 13 34 ACKR2 1238 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 42907140 42907140 + Silent SNP A A G TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad TGGGGAATAAATCAGCCTGAG 0.502 14 24 IMPDH2 3615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 49065256 49065256 + Missense_Mutation SNP A A T TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad GGGATACCGCAGAAACCATGC 0.542 15 45 FAIM 55179 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 138341217 138341217 + Nonsense_Mutation SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad ACCAATACTTGGGTATTACAC 0.333 14 26 BOD1L1 259282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 13600828 13600828 + Missense_Mutation SNP T T C TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad TTGGTGGTACTGGTTTTCAAG 0.468 8 12 HHIP 64399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 145636526 145636526 + Missense_Mutation SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad GGCACTAGTGGGTCCTGTAGA 0.428 16 34 PRICKLE4 29964 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 41753227 41753227 + Silent SNP C C T TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad AACTCTACTGCGGCCGTCATC 0.622 19 46 KIAA1244 57221 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 138601169 138601169 + Missense_Mutation SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad GACCAGCGGCGTGCTGATGGT 0.547 18 29 CDCA7L 55536 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 21956473 21956473 + Missense_Mutation SNP C C T TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad TCTTCATCATCACTGGGGGCG 0.463 30 143 EGFR 1956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 55211080 55211080 + Missense_Mutation SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad CAGATCATCAGAGGAAATATG 0.423 692 45 LEP 3952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 127892092 127892092 + Silent SNP C C T TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad GAACCCTGTGCGGATTCTTGT 0.488 23 87 B4GALT1 2683 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 33135343 33135343 + Silent SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad CATAGCGGCCGCCCATCTTCA 0.557 12 36 C5 727 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 123812513 123812513 + Silent SNP C C T rs35352264 byFrequency TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad AAAGTATTCCCAAAAGGCCCA 0.373 23 51 CREBBP 1387 broad.mit.edu;ucsc.edu 37 16 3781375 3781375 + Missense_Mutation SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad AAGGCGTCGCGCCCATCCATG 0.642 6 16 RNF175 285533 broad.mit.edu;ucsc.edu 37 4 154636798 154636798 + Missense_Mutation SNP C C T TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad TGTAGGCAACCGGCTGACACT 0.502 10 19 PRDM9 56979 broad.mit.edu;ucsc.edu 37 5 23522989 23522989 + Missense_Mutation SNP T T A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad TGGATACTCCTGGCTGGTAAG 0.493 20 51 CALN1 83698 broad.mit.edu;ucsc.edu 37 7 71571179 71571179 + Silent SNP G G A rs139754746 TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad GCTCCACCTCGCTTGGCATGT 0.592 10 31 CRYBB2P1 1416 broad.mit.edu;ucsc.edu 37 22 25855471 25855471 + RNA SNP C C T TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad CTTTGGGGCCCGTCACCCTCA 0.627 12 37 NLRP1 22861 broad.mit.edu;ucsc.edu 37 17 5462410 5462410 + Missense_Mutation SNP G G A TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad TTTTCCTTCCGCTTCATCTGC 0.547 28 69 RABEPK 10244 broad.mit.edu;hgsc.bcm.edu 37 9 127996226 127996226 + Frame_Shift_Del DEL C C - TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad AAGGGGAAATCTATGACGATT 0.388 32 89 PLCE1 51196 broad.mit.edu;hgsc.bcm.edu 37 10 96053387 96053387 + Frame_Shift_Del DEL T T - TCGA-HT-8110-01A-11D-2395-08 TCGA-HT-8110-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6dbc06d4-1ab9-42f1-afd6-dd23af867c55 b325a96a-ae13-4143-a715-7e57b29f83ad TAACAAAACATCTGGAAAAAG 0.388 11 24