Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
CALHM2	51063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	105209278	105209278	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8111-01A-11D-2395-08	TCGA-HT-8111-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1dba9345-2d78-4d00-9509-c30b2e197e07	dbc20e74-6c64-49a3-ad8a-461ce0c26b71	CTGGCCGTGAGTGAGGAAGGG	0.607	31	118
ART1	417	hgsc.bcm.edu;broad.mit.edu	37	11	3681544	3681544	+	Silent	SNP	C	C	T			TCGA-HT-8111-01A-11D-2395-08	TCGA-HT-8111-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1dba9345-2d78-4d00-9509-c30b2e197e07	dbc20e74-6c64-49a3-ad8a-461ce0c26b71	CCCGCATCTACCTCCGAGCCC	0.607	7	93
KMT2D	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	49425070	49425070	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-8111-01A-11D-2395-08	TCGA-HT-8111-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1dba9345-2d78-4d00-9509-c30b2e197e07	dbc20e74-6c64-49a3-ad8a-461ce0c26b71	AGTGCTGAGTTGCACATTCTT	0.617	28	115
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578449	7578449	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8111-01A-11D-2395-08	TCGA-HT-8111-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1dba9345-2d78-4d00-9509-c30b2e197e07	dbc20e74-6c64-49a3-ad8a-461ce0c26b71	TTGTAGATGGCCATGGCGCGG	0.632	56	39
IL22RA1	58985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	24460805	24460805	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-8111-01A-11D-2395-08	TCGA-HT-8111-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1dba9345-2d78-4d00-9509-c30b2e197e07	dbc20e74-6c64-49a3-ad8a-461ce0c26b71	ATTGGCGTGGGGGTAGGATGA	0.522	15	53
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	152534214	152534214	+	Silent	SNP	G	G	A	rs74320183	by1000genomes	TCGA-HT-8111-01A-11D-2395-08	TCGA-HT-8111-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1dba9345-2d78-4d00-9509-c30b2e197e07	dbc20e74-6c64-49a3-ad8a-461ce0c26b71	TAACTTTTTCGACGTCGAGAC	0.458	28	235
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-8111-01A-11D-2395-08	TCGA-HT-8111-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1dba9345-2d78-4d00-9509-c30b2e197e07	dbc20e74-6c64-49a3-ad8a-461ce0c26b71	ATAAGCATGACGACCTATGAT	0.393	23	34
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	123107220	123107220	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-8111-01A-11D-2395-08	TCGA-HT-8111-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1dba9345-2d78-4d00-9509-c30b2e197e07	dbc20e74-6c64-49a3-ad8a-461ce0c26b71	GTTATACATCACAGTCAATGA	0.333	17	61
ETFDH	2110	hgsc.bcm.edu;broad.mit.edu	37	4	159603573	159603573	+	Silent	SNP	G	G	A			TCGA-HT-8111-01A-11D-2395-08	TCGA-HT-8111-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1dba9345-2d78-4d00-9509-c30b2e197e07	dbc20e74-6c64-49a3-ad8a-461ce0c26b71	GGAAAGAGAAGGGGGTATGAA	0.388	23	56
HTR1E	3354	hgsc.bcm.edu;broad.mit.edu	37	6	87725488	87725488	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8111-01A-11D-2395-08	TCGA-HT-8111-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1dba9345-2d78-4d00-9509-c30b2e197e07	dbc20e74-6c64-49a3-ad8a-461ce0c26b71	GATCCTTACCGTCTGGACCAT	0.582	9	129
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	72969169	72969169	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-8111-01A-11D-2395-08	TCGA-HT-8111-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1dba9345-2d78-4d00-9509-c30b2e197e07	dbc20e74-6c64-49a3-ad8a-461ce0c26b71	AATTCAGGTCGCAGATTTTTT	0.294	8	10