Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MPP7 143098 hgsc.bcm.edu;broad.mit.edu 37 10 28414006 28414006 + Silent SNP C C T TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 GTTCATCCTTCTTAATGGTAG 0.403 7 125 TTC40 54777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 134752146 134752146 + Silent SNP G G A TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 GACTCAGCACGTTTATGATTT 0.577 33 77 OR5AN1 390195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 59132063 59132063 + Silent SNP C C T TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 CCTGGAACCTCTCCCTCATTG 0.428 49 203 MYO7A 4647 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 76877199 76877199 + Missense_Mutation SNP T T A TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 TCCAGGCCGATGTCGCCATGG 0.587 13 40 LRRIQ1 84125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 85518292 85518292 + Silent SNP A A G TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 AGCCTAGTGAAAAAATGTAAG 0.323 50 98 KSR2 283455 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 118199044 118199044 + Missense_Mutation SNP C C T TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 GTGCCGCTGCCGGGGCGATGG 0.716 85 102 ANAPC5 51433 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 121790075 121790075 + Silent SNP C C G TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 TGATGCCGAACACATTGGCGT 0.632 17 90 KDM2B 84678 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 122012481 122012481 + Missense_Mutation SNP A A C TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 TCGGACTGTGAAATCAGGGTC 0.567 33 88 SOS2 6655 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 50655245 50655245 + Missense_Mutation SNP A A C TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 TATCAGAAAGAAAGGCTTCTC 0.338 11 61 CEP128 145508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 81209521 81209521 + Missense_Mutation SNP G G C TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 AAATTCCTGAGTTGTTGTCTG 0.418 37 54 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578475 7578475 + Missense_Mutation SNP G G T rs137852790 TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 GGTGCCGGGCGGGGGTGTGGA 0.612 19 66 TMEM104 54868 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 72832811 72832811 + Missense_Mutation SNP C C G TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 TCATCCTCAGCGAGACCAAGC 0.602 14 44 SLC44A5 204962 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 75685524 75685524 + Missense_Mutation SNP A A G TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 GATTGAGAGCAAAATGAAAGT 0.368 7 39 ST6GALNAC3 256435 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 77093225 77093225 + Missense_Mutation SNP A A T TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 CTACGGGATGATAAATGACAC 0.413 38 165 OLFML2B 25903 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 161967933 161967933 + Missense_Mutation SNP C C T TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 GCATGGTTGGCGATGCTGGGA 0.612 54 175 DERL3 91319 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 24179853 24179853 + Silent SNP G G A TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 CACCCAGCAGGTCCACGAGGA 0.642 8 32 MGAT5 4249 hgsc.bcm.edu;broad.mit.edu 37 2 135180442 135180442 + Missense_Mutation SNP C C G TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 TTGACCTCAACAATCAGGAGG 0.448 17 81 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179413638 179413638 + Silent SNP G G A rs140576051 by1000genomes TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 CACAGCTGTCGCCTTTTCCAG 0.423 21 78 DNAJC10 54431 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 183593668 183593668 + Nonsense_Mutation SNP C C T TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 AATGCTTTGCCGAATGAAAGG 0.378 17 99 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 ATAAGCATGACGACCTATGAT 0.393 23 82 ZBTB20 26137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 114070216 114070216 + Nonsense_Mutation SNP G G A TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 ACGCTGTGCTGTGGGTGGCTC 0.657 33 95 STK32B 55351 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 5461892 5461892 + Nonsense_Mutation SNP C C G TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 GCGTGCCCTACTTGGCCGACA 0.562 12 128 PPARGC1A 10891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 23815630 23815630 + Silent SNP T T C TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 TGGAGAATTGTTCATTACTGA 0.458 30 117 ITIH6 347365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 54784174 54784174 + Missense_Mutation SNP C C T TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 TGGAGTAACACATTTCACAGT 0.537 29 120 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76890195 76890195 + Splice_Site SNP C C G TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 AACTGAACACCTAAAAATAAC 0.353 35 133 GPRASP2 114928 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 101970909 101970909 + Missense_Mutation SNP A A G TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 AAAGATGTTGACAGTGATAGG 0.483 14 89 MAGEC1 9947 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 140995062 140995062 + Silent SNP T T C TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 TCCAGTCTTCTCTCCAGAGCC 0.567 142 426 TSC2 7249 broad.mit.edu;ucsc.edu 37 16 2122981 2122981 + Missense_Mutation SNP A A C TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 ACAAAACCAAACAGGTAGGAG 0.547 12 46 TP53 7157 broad.mit.edu;ucsc.edu 37 17 7577538 7577538 + Missense_Mutation SNP C C T rs11540652 TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 GATGGGCCTCCGGTTCATGCC 0.572 13 73 ACSM2A 123876 broad.mit.edu;ucsc.edu 37 16 20492162 20492162 + Silent SNP G G A TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 TTGGACCCTCGGAGGTAGAGA 0.567 22 98 FAM65A 79567 broad.mit.edu;ucsc.edu 37 16 67578714 67578714 + Silent SNP G G A rs146173403 TCGA-HT-8563-01A-11D-2395-08 TCGA-HT-8563-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c1bab17-40da-40e8-9739-c360d082f6bd fde28c63-fec0-4e41-a02d-54bbb121fbc9 GGGAGATCCCGGCCAGCTCTG 0.652 30 100