Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count TRIM51 84767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55653246 55653246 + Silent SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 TCTGTTTGCCGTGCTCCAACT 0.507 10 11 LRRC32 2615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 76371628 76371628 + Missense_Mutation SNP G G T TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 GAGGTCAGGTGCTCAAGAAAG 0.587 9 17 LTA4H 4048 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 96410892 96410892 + Splice_Site SNP C C G TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 TGTGCAATGACCTAAAGAAAA 0.299 29 23 TDG 6996 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 104374741 104374741 + Splice_Site SNP G G T TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 AACCATTTTTGTAAGTGGTTA 0.318 33 14 PCNX 22990 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 71444691 71444691 + Missense_Mutation SNP C C T TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 CGACCTAAATCTTCTAGCGTA 0.468 23 24 DYNC1H1 1778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 102474561 102474561 + Missense_Mutation SNP G G T TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 GGTGCCTGGGGCTGCTTTGAC 0.587 22 15 OTUD7A 161725 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 31776380 31776380 + Missense_Mutation SNP C C T TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 GATGAACTTGCGCTCCCCCTG 0.672 7 14 HIRIP3 8479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 30006466 30006466 + Missense_Mutation SNP T T C TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 TCCGGGTCGCTACAAGGGGTG 0.552 11 129 SPNS3 201305 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 4356345 4356345 + Missense_Mutation SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 CATGACCGGCGTCATTGGGGT 0.572 38 20 TP53 7157 hgsc.bcm.edu;broad.mit.edu 37 17 7577120 7577120 + Missense_Mutation SNP C C T rs28934576 by1000genomes TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 GGCACAAACACGCACCTCAAA 0.542 5 3 LRRC59 55379 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 48465454 48465454 + Missense_Mutation SNP G G A rs140038553 TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 TGCCTCTCCCGCTCCTGATCT 0.527 97 50 ST8SIA5 29906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 44260408 44260408 + Missense_Mutation SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 CAGCAGCACCGACGCGTTCTC 0.607 4 5 ZNF536 9745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 31040264 31040264 + Silent SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 ACCCCTTGGCGGGCCTGCCAA 0.632 12 15 RERE 473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 8415150 8415150 + Missense_Mutation SNP T T G TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 AAATAACTTATAACTGCTTGT 0.438 18 16 EPHA8 2046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 22924293 22924293 + Silent SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 TGAGCGAGGCGTCCATCATGG 0.662 77 60 NCMAP 400746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 24932146 24932146 + Missense_Mutation SNP G G A rs113438005 TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 CAAGCCAACCGCCCCTTCTGC 0.592 14 45 RUNX3 864 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 25228881 25228881 + Missense_Mutation SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 GTAGGGGGACGGGTTGGCCTG 0.692 11 38 IPO9 55705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 201824023 201824023 + Missense_Mutation SNP T T C TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 GCCTATTGTTTGGAACACCCT 0.448 13 79 BPIFB4 149954 hgsc.bcm.edu;ucsc.edu 37 20 31695618 31695618 + Missense_Mutation SNP G G A rs138732736 byFrequency TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 AGACATTGACGTGTTGGAGGT 0.493 7 11 DYSF 8291 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 71887771 71887771 + Missense_Mutation SNP G G A rs147056383 by1000genomes TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 GCTGGAGCCCGTATTTGGAAA 0.507 5 32 COL4A4 1286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 227876966 227876966 + Missense_Mutation SNP C C T TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 GACCCAGGGACGCCATCCACA 0.567 16 34 SAG 6295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 234235841 234235841 + Missense_Mutation SNP G G C TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 AAATCCCCAAGAAGTAAGAGT 0.552 79 57 TTLL3 26140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 9870897 9870897 + Missense_Mutation SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 CGCTGACTTCGTGTTCGGGGA 0.617 33 23 ZNF654 55279 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 88189554 88189554 + Missense_Mutation SNP T T C TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 AGTCTGCCAGTTTCTACTAGC 0.358 6 17 SLC2A9 56606 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 9987317 9987317 + Missense_Mutation SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 ATGATGAAGCGTCCCACGATG 0.517 12 34 MUC7 4589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 71347534 71347534 + Missense_Mutation SNP G G A rs145866670 TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 AAAATTTCTCGATTTCTTTTA 0.358 14 24 FRAS1 80144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 79387412 79387412 + Silent SNP C C T TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 ATGGCACCATCGAGCGAACCA 0.547 33 69 SLC6A19 340024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 1217005 1217005 + Missense_Mutation SNP C C T TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 TCCGACCCCGCGGCCTACGCG 0.622 62 157 ADAMTS16 170690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 5222929 5222929 + Missense_Mutation SNP C C T TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 GTGGTGCCATCGTATTGGAAG 0.368 19 26 PCDHA1 56147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140166983 140166983 + Missense_Mutation SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 CACCGTCATCGCCCTCATCAC 0.527 14 53 GABRA6 2559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 161113291 161113291 + Missense_Mutation SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 CTCAGAAAACGTCAGTCGGAT 0.488 29 38 OR2V2 285659 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 180582042 180582042 + Missense_Mutation SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 CGTGGTTATGGCGGTCTTCAC 0.537 41 106 SOX4 6659 hgsc.bcm.edu;broad.mit.edu 37 6 21594838 21594838 + Missense_Mutation SNP G G T TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 CTCGGGCGCCGGCCTCGAGCT 0.731 4 20 MICB 4277 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 31473467 31473467 + Silent SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 TTCTCGCTGAGGGACATCTGG 0.557 29 22 PKD1L1 168507 hgsc.bcm.edu;broad.mit.edu 37 7 47851503 47851503 + Missense_Mutation SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 GAGACTCCCCGTAGGGAGGAT 0.582 7 22 RP1L1 94137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 10470654 10470654 + Silent SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 ACAGGCTGCCGTCCTCATTCA 0.662 57 52 ATF4P4 100127952 broad.mit.edu;ucsc.edu 37 11 113659993 113659993 + RNA SNP A A C rs906846 by1000genomes TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 GGCAGCATGTAGGTTGCAGGG 0.657 3 26 HRG 3273 broad.mit.edu;ucsc.edu 37 3 186383868 186383868 + Silent SNP G G A TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 TGCAGTATTCGTGTGCCGTGA 0.468 12 42 BEST2 54831 broad.mit.edu;ucsc.edu 37 19 12866569 12866569 + Silent SNP C C T TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 TCTTCTACGCCGGCTGGCTCA 0.582 3 32 NF1 4763 broad.mit.edu;hgsc.bcm.edu 37 17 29527568 29527569 + Frame_Shift_Del DEL CT CT - TCGA-HT-A4DS-01A-11D-A26M-08 TCGA-HT-A4DS-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 82900479-957f-424c-b32f-b1ecf4b1fd05 846758c1-5fd9-4c3a-bf82-66a60311bb64 GGGAAGATAACTCTGTCATTTT 0.381 17 8