Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CALML3 810 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 5567140 5567140 + Missense_Mutation SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a ATCACCACCCGCGAGCTGGGC 0.647 18 23 TRDMT1 1787 hgsc.bcm.edu;broad.mit.edu 37 10 17204201 17204201 + Missense_Mutation SNP G G C rs143074583 TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a GAAGCTATTCGTCCTTGAATC 0.343 37 39 CTNNA3 29119 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 68040315 68040315 + Missense_Mutation SNP A A C TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CATCCAACACATTCAATGAGC 0.338 24 23 OR8J3 81168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55904472 55904472 + Silent SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a TATGCGAAGCGCAGGTGGAAA 0.388 25 39 CD163L1 283316 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 7527057 7527057 + Silent SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a TGACCCCTGCGTCCTCCTTGT 0.567 44 84 KERA 11081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 91449551 91449551 + Missense_Mutation SNP G G T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a AGGTCAAGAAGGGTCAGGTTC 0.403 49 110 FAM71C 196472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 100043170 100043170 + Silent SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a ATACAATAGAGATATGAATCC 0.413 32 64 HSPA2 3306 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 65007730 65007730 + Missense_Mutation SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CATCGGCGACGCCGCCAAGAA 0.597 25 74 TGM5 9333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 43545044 43545044 + Missense_Mutation SNP C C G TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a AGGATGGCCACGCTGCCCGTC 0.567 46 94 ACSBG1 23205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 78466000 78466000 + Missense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a GTGGTAGGGCCGGGCCGCCGC 0.562 34 54 LAT 27040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 28996764 28996764 + Missense_Mutation SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CTGGTCCCCTGCGTGCTGGGG 0.642 30 67 MED13 9969 hgsc.bcm.edu;broad.mit.edu 37 17 60111221 60111221 + Silent SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CAGACATCTCCTTCAAGCAAC 0.383 6 57 SETBP1 26040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 42532027 42532027 + Missense_Mutation SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CATTCCGTCCGACACCAGCAC 0.532 18 34 SALL3 27164 hgsc.bcm.edu;broad.mit.edu 37 18 76752248 76752248 + Missense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CACGAGGACGCGCCCGCGCCG 0.726 11 20 HCN2 610 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 613254 613254 + Missense_Mutation SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a GCAGGAGATCGTCAACTTCAA 0.672 17 36 KIAA1683 80726 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 18377437 18377437 + Missense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CTCGTAACTGCCTGGTCATAC 0.567 44 160 CSMD2 114784 hgsc.bcm.edu;broad.mit.edu 37 1 34258115 34258115 + Missense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a TCCTCAAAGGCGAGCTTGATC 0.532 5 76 CCDC30 728621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 43110444 43110444 + Missense_Mutation SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a TTCTTAGAGCGAATTATAAGG 0.428 26 57 GPBP1L1 60313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 46120391 46120391 + Nonsense_Mutation SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a TCATGACCTCGGGAAGAGCTA 0.557 26 35 C1orf173 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 75038487 75038487 + Silent SNP A A C TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CCTCTTCAGAACCGTCCTCTC 0.522 48 82 ELTD1 64123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 79470885 79470885 + Silent SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a AGGAACAATTCAACAAAGTGG 0.333 12 25 OTUD7B 56957 hgsc.bcm.edu;broad.mit.edu 37 1 149916850 149916850 + Missense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CGGCCGCCCTCGTTGCTGGTG 0.582 9 173 FLG 2312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 152282387 152282387 + Missense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a GAGGAAGTCTCTGCATGACGA 0.562 182 349 OBSCN 84033 hgsc.bcm.edu;ucsc.edu 37 1 228548163 228548163 + Nonsense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a ACTGGGTCCCCGAGGCCCTCT 0.687 18 29 MYH7B 57644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 33568534 33568534 + Missense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CGACATGCTGCGCAGTAAGGG 0.652 44 93 SCAF4 57466 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 33044602 33044602 + Missense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CCGGGCCGGGCGCCAAGAAGA 0.562 34 68 SYN3 8224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 32937651 32937651 + Missense_Mutation SNP C C T rs141167959 TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a TTGGCCATGGCGACCACGCTG 0.542 15 29 TMPRSS6 164656 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 37471260 37471260 + Silent SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a TGGTGATCCCGGCCGTGGCCA 0.652 55 89 HADHA 3030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 26457128 26457128 + Missense_Mutation SNP A A G TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a GGCAGCCACAATAGGCTTTGT 0.443 21 44 MYEOV2 150678 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 241073371 241073371 + Missense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a TCTGCATGAACGGCCTTTTCA 0.483 36 99 LMCD1 29995 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 8590552 8590552 + Missense_Mutation SNP A A G TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a GCTACCACCAACGGCAGTCTC 0.612 17 30 SCN5A 6331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 38674720 38674720 + Missense_Mutation SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a TCTGCCATGCGCTTCTCGATG 0.647 19 45 COL7A1 1294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 48629342 48629342 + Missense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a AGTCTCACGCCGCCATTCCAA 0.632 103 82 STXBP5L 9515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 121097685 121097685 + Missense_Mutation SNP G G T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a ATTTCGAAAGGCCCAGTCAGC 0.388 16 35 MFI2 4241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 196730813 196730813 + Missense_Mutation SNP G G A rs143354088 TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a TTCCAGCGCCGCCACGTAGTC 0.647 94 190 UGT2B7 7364 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 69972927 69972927 + Missense_Mutation SNP C C A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a AAACCAGATACCTTAGGTCTC 0.358 36 108 MTMR12 54545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 32235068 32235068 + Splice_Site SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a GGACTCTTACCATGTTAGTAT 0.378 14 40 ABLIM3 22885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 148622095 148622095 + Missense_Mutation SNP C C T rs139404389 byFrequency TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a GATCTACAAACGGCATGGTAT 0.572 14 148 ATP10B 23120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 160039781 160039781 + Silent SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a AAACAGTGTCGGTCTGATTTA 0.493 15 59 EGFL8 80864 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 32135153 32135153 + Missense_Mutation SNP G G T rs149576421 TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a AGATGAGCGCGCTCTGAAGCA 0.652 37 44 PPP2R5D 5528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 42975186 42975186 + Missense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a TTCCTTGAGTCTCCTGATTTC 0.512 50 105 MEP1A 4224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 46800871 46800871 + Missense_Mutation SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CAGAAGTTTCGCTACCTTTTC 0.507 37 80 TIAM2 26230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 155578065 155578065 + Missense_Mutation SNP C C G TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a AAACGAAAAGCCAACAGCACC 0.567 25 31 GLI3 2737 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 42006178 42006178 + Silent SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CAGAGAGGTCGCTTCTGCCCG 0.602 56 157 EGFR 1956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 55233043 55233043 + Missense_Mutation SNP G G T rs139236063 TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a TGCCCGGCAGGAGTCATGGGA 0.567 1373 1949 ZNF679 168417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 63709527 63709527 + Missense_Mutation SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CCTGGAAGCCGAGAAATGGTG 0.572 17 76 SLC13A1 6561 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 122759134 122759134 + Splice_Site SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a GAGATACTCACCAATGGAGAT 0.383 12 55 ZHX1 11244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 124267666 124267666 + Missense_Mutation SNP G G A rs35951597 byFrequency TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a AGATATTCCCGAAGAAGAAAC 0.343 15 66 PPP3R2 5535 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 104356877 104356877 + Silent SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a AGAGCTCCCCGTTGGAAATGT 0.542 38 76 MID1 4281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 10534972 10534972 + Missense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a ACCTGATGATCGCGGTGCCGC 0.488 26 59 GPR64 10149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 19031906 19031906 + Missense_Mutation SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CCGGAGACATGGGTTTGGGGC 0.582 94 194 GTF2IRD2P1 401375 broad.mit.edu;ucsc.edu 37 7 72658498 72658498 + RNA SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a tgatctcatcgattgcgatag 0.463 25 99 PNMA5 114824 broad.mit.edu;ucsc.edu 37 X 152159280 152159280 + Missense_Mutation SNP C C T TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a ATGTTTCAGACGAATCATGTC 0.562 44 95 EPN3 55040 broad.mit.edu;ucsc.edu 37 17 48613860 48613860 + Missense_Mutation SNP G G A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CGCCACAGTGGCCCTCAGCCC 0.647 30 63 PRAMEF1 65121 broad.mit.edu;ucsc.edu 37 1 12856042 12856042 + Missense_Mutation SNP T T A TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a ATGTGTACACTGAGGGAAGTC 0.562 49 297 PIK3R6 146850 broad.mit.edu;ucsc.edu 37 17 8741186 8741186 + Silent SNP C C T rs149242502 by1000genomes TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a CCTGGCTTTCCGCCTGGAAAA 0.582 29 59 EEF1A1 1915 broad.mit.edu;hgsc.bcm.edu 37 6 74228912 74228914 + In_Frame_Del DEL CAC CAC - TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a GCTTCAAATTCACCAACACCAGC 0.448 11 46 POC1B-GALNT4 100528030 broad.mit.edu;hgsc.bcm.edu 37 12 89916851 89916854 + Frame_Shift_Del DEL TTTG TTTG - TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a ACCTTATTTCTTTGTTTGAAGTAT 0.387 16 26 ZNF569 148266 broad.mit.edu;hgsc.bcm.edu 37 19 37903500 37903502 + In_Frame_Del DEL TAA TAA - TCGA-HT-A5RC-01A-11D-A289-08 TCGA-HT-A5RC-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 857b2ffe-7177-426d-951e-0d5a519dc3a2 51fde4fb-c360-49e9-b5d9-252ba0b4169a ATAGGGTTTCTAATGAGTATGAA 0.399 37 69