Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count API5 8539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 43343605 43343605 + Silent SNP C C T TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 CAATTAAATTCCTTTCTACAA 0.378 21 52 OR4X1 390113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 48285528 48285528 + Missense_Mutation SNP G G A TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 GTTGTGCTGGGCAATGGCCTC 0.463 11 31 MYO7A 4647 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 76873968 76873968 + Missense_Mutation SNP A A G TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 CATCCCCCCCAAGAACAACCA 0.567 98 165 POSTN 10631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 38171320 38171320 + Splice_Site SNP C C T TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 AAGAGACTTACGTTTTCTGTC 0.378 12 14 PPL 5493 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 4944606 4944606 + Missense_Mutation SNP C C T TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 GCTGTAGCCCCGCGAGATCAG 0.647 19 52 CDYL2 124359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 80718589 80718589 + Silent SNP G G A rs140729164 TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 TTTCCATCCCGTTCTGAGACT 0.532 24 78 MRM1 79922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 34958397 34958397 + Missense_Mutation SNP T T C TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 GAGCTTCTGTTTGGCATGACC 0.692 48 105 PLIN4 729359 hgsc.bcm.edu;ucsc.edu 37 19 4512847 4512847 + Silent SNP G G A rs61730743 by1000genomes TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 TCACGGCACCGGTCACCCCAC 0.577 41 80 CBLC 23624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 45284225 45284225 + Silent SNP C C T TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 ACGCACTCTTCCCCGGGGGAA 0.617 28 35 NLRP5 126206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56515295 56515295 + Silent SNP C C T TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 CAGAATCGACCACATGCTCTA 0.453 17 18 INTS3 65123 hgsc.bcm.edu;broad.mit.edu 37 1 153730172 153730172 + Missense_Mutation SNP A A G TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 CACCCTTCTAATGAAGTACTG 0.527 7 94 SPTA1 6708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 158612230 158612230 + Missense_Mutation SNP C C T TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 CCATCACAAGCGCTACACTCA 0.453 21 81 CDC73 79577 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 193111017 193111017 + Missense_Mutation SNP G G C TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 AAAAATTGCTGCAATCAAAGC 0.348 10 13 URB2 9816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 229772950 229772950 + Missense_Mutation SNP A A G TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 ACCCGAAGGTATAGAACCTAG 0.502 41 78 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 ATAAGCATGACGACCTATGAT 0.393 22 39 STK36 27148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 219544418 219544418 + Missense_Mutation SNP C C T TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 TTGACTCAGGCCTATAAACGC 0.557 21 50 ARMC9 80210 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 232135764 232135764 + Missense_Mutation SNP G G C TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 GCTCATCAATGCTTTTGCGTC 0.493 12 37 CD96 10225 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 111319659 111319659 + Missense_Mutation SNP C C T TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 TAGTAATAAACCAGCCCAATC 0.378 18 44 SLIT2 9353 hgsc.bcm.edu;broad.mit.edu 37 4 20618726 20618726 + Silent SNP G G A TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 GCACATGCCAGCCCAGCAGCC 0.577 7 75 ATP8A1 10396 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 42414962 42414962 + Missense_Mutation SNP T T C TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 TGTTTCGTGGTATCATATGCT 0.463 10 47 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 126373545 126373545 + Missense_Mutation SNP C C T TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 GATCCTTCTCCGGCAGAGTGG 0.483 18 61 KIF4B 285643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 154395557 154395557 + Missense_Mutation SNP G G A TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 GCCAACAAGCGACTCAAGGAT 0.483 29 72 GPRC6A 222545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 117130562 117130562 + Missense_Mutation SNP G G A TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 CTTAACTCTTGGCATGTAGCT 0.443 13 39 CLIP2 7461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 73770855 73770855 + Missense_Mutation SNP G G A TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 TATGGCCATGGGTGTGTCAGC 0.617 26 74 SLC52A2 79581 hgsc.bcm.edu;broad.mit.edu 37 8 145584537 145584537 + Missense_Mutation SNP G G C TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 TGCATGGCGGGGGCCGGCCGG 0.657 9 116 ARHGAP6 395 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 11174686 11174686 + Missense_Mutation SNP C C T TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 AAATAGTCCACGACATCAGGA 0.443 14 27 GRPR 2925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 16142351 16142351 + Missense_Mutation SNP C C T TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 CTCCTAATAACGTGTGCTCCA 0.488 54 104 ZNF645 158506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 22291550 22291550 + Missense_Mutation SNP G G A TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 AGTTACCAGCGCTTCGCTTGA 0.438 39 55 GRIPAP1 56850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 48830666 48830666 + Missense_Mutation SNP C C T TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 CTTGCTGAGCCGCACAATTTC 0.567 10 29 ZC4H2 55906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 64139085 64139085 + Splice_Site SNP C C A TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 CTCAAAGTAACTTTGGAGATG 0.532 23 53 DLG3 1741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 69669655 69669655 + Nonsense_Mutation SNP C C T TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 GGTGCGGAGGCGACAGCCTCC 0.662 8 16 TMEM164 84187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 109416566 109416566 + Missense_Mutation SNP A A C TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 GGGACACCAGACTCTCATGAC 0.552 30 77 CUL4B 8450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 119669687 119669687 + Missense_Mutation SNP C C G TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 CCACTTACCTCTTTAAATTCT 0.353 46 129 CSAG1 158511 hgsc.bcm.edu;broad.mit.edu 37 X 151908875 151908875 + Missense_Mutation SNP G G C TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 AGATGTCCAGGAAACCACGAG 0.572 24 383 BLK 640 broad.mit.edu;ucsc.edu 37 8 11400849 11400849 + Missense_Mutation SNP C C T rs142352008 byFrequency TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 CCGCCACTGCCGCCCCTGGTG 0.532 23 28 SSH1 54434 broad.mit.edu;ucsc.edu 37 12 109183011 109183011 + Missense_Mutation SNP T T C TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 ATCCCAAATATAGCATCATCC 0.547 4 12 FUBP1 8880 broad.mit.edu;hgsc.bcm.edu 37 1 78444597 78444597 + Frame_Shift_Del DEL A A - TCGA-HT-A615-01A-11D-A29Q-08 TCGA-HT-A615-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx bb574e00-e564-4dda-972c-dc25f4b07540 c83749e7-fee4-46ed-8263-ae642aee2429 TGCATCTTTGAAAGCGTCGTT 0.612 77 72