Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ATF7IP2	80063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	10524502	10524502	+	Missense_Mutation	SNP	C	C	T	rs140651559		TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	TAGAAGTAAACGGAAGATATT	0.348	9	44
CDH1	999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	68846137	68846137	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	TGACACCAACGATAATCCTCC	0.458	20	63
MED1	5469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	37565209	37565209	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	GAGGAAGACACAGAACCACTG	0.488	21	78
KIAA1324	57535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	109716150	109716150	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	AGCCTTCTCAGTATGGACCAA	0.453	15	83
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	157490931	157490931	+	Silent	SNP	C	C	T			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	CAGAGGGGGACGACCTATTTC	0.592	29	121
PEA15	8682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	160181386	160181386	+	Nonsense_Mutation	SNP	G	G	T			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	CATCACCCTTGAAGATCTAGA	0.532	16	119
PCBP1	5093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	70315908	70315908	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	TCTAATCAATGCCAGGCTTTC	0.498	13	40
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179500810	179500810	+	Missense_Mutation	SNP	C	C	T	rs149059189	by1000genomes	TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	AAGCCAATGACGCCTGGCACA	0.512	17	76
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	201478596	201478596	+	Silent	SNP	G	G	A			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	TTTTGGGCTCGGCGCCAGGTG	0.473	11	38
NRP2	8828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	206605324	206605324	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	TGTTAGAATCCGCCCTCAGAC	0.557	20	76
ADD1	118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	2877687	2877687	+	Silent	SNP	G	G	A	rs140936293		TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	CACCACCCCCGACCACAGCCC	0.478	24	159
NFXL1	152518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	47850315	47850315	+	Silent	SNP	A	A	T			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	TCTTCTTCCGACGACCCTTCA	0.348	7	32
TMEM150C	441027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	83417256	83417256	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	CCGAAGGAAGCCAGACACAGA	0.453	13	94
KIAA1109	84162	hgsc.bcm.edu;ucsc.edu	37	4	123239396	123239396	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	AAGAGATGTTCGTAAAAAATT	0.393	7	77
DCLK2	166614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	151153904	151153904	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	GCCATGGTGTACAACTTAGCC	0.448	29	157
SREK1	140890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	65460676	65460676	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	AAAATCCAGGTCTAGCTCAAA	0.368	30	89
AGAP3	116988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	150840451	150840451	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	CGCTGGATACGGGCCAAGTAT	0.627	16	78
KCNU1	157855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	36671862	36671862	+	Silent	SNP	G	G	T			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	CCTTAGGACGGACCTTCATCA	0.353	12	19
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	137704486	137704486	+	Silent	SNP	C	C	T	rs150591401	byFrequency	TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	GAGGACCCTCCGGAGCTCCAG	0.637	4	12
SHROOM2	357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	9900906	9900906	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	TGAGGATTCAACCAGGTACTG	0.627	14	24
DENND1B	163486	broad.mit.edu;ucsc.edu	37	1	197611924	197611924	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	TTCACATCCACGGCAACAAAA	0.373	4	21
LRRC37A11P	342666	broad.mit.edu;ucsc.edu	37	17	37188187	37188187	+	RNA	SNP	G	G	A	rs57993280	by1000genomes	TCGA-HT-A617-01A-11D-A29Q-08	TCGA-HT-A617-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	98008bb2-3c35-4a4f-b0a0-b80858eb1e21	9197147d-0b09-40ac-b6f3-ecaeb806034c	CACTTCCACCGCCAGACAAGG	0.488	41	96