Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CELF2 10659 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 11363187 11363187 + Missense_Mutation SNP G G C TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GGCTCTGAATGGAGGACTTGG 0.517 40 86 MUC2 4583 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 1083749 1083749 + Missense_Mutation SNP G G A TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 AGGCTGCACGGCCCCAAAGAT 0.701 12 28 CIT 11113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 120151065 120151065 + Missense_Mutation SNP T T C TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 ACAATGTACTTCCTGTCCCAG 0.443 131 165 WASF3 10810 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 27239244 27239244 + Missense_Mutation SNP C C G TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CTCTTCAAGACAGAATTGATC 0.408 15 43 OLFM4 10562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 53624246 53624246 + Silent SNP G G A rs147184057 TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 ATTGGGTGGCGCCATTGAATA 0.448 49 62 UGGT2 55757 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 96592232 96592232 + Silent SNP A A G TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CATCATATTTAGAATGAATTC 0.358 15 28 METTL17 64745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 21458174 21458174 + Silent SNP C C T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GGCGGCGGCACTGAAGTGTCT 0.617 52 33 PELI2 57161 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 56763754 56763754 + Missense_Mutation SNP C C G TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GAGAAGTCTGCAAAATACTGG 0.532 42 95 AP4E1 23431 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 51289979 51289979 + Missense_Mutation SNP T T C TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 TTATAAAATTTGGAAAGATGA 0.308 5 23 HERC1 8925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 63935628 63935628 + Missense_Mutation SNP C C T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GTTCATGAGCCCACCTAGTCC 0.418 20 1 THOC6 79228 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 3075763 3075763 + Missense_Mutation SNP G G A TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CTCCCAGAGCGTCTCACCATG 0.567 25 106 CCP110 9738 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 19547384 19547384 + Silent SNP G G A TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CAAGCCATACGGAACACTCTA 0.388 34 24 RLTPR 146206 hgsc.bcm.edu;broad.mit.edu 37 16 67690171 67690171 + Silent SNP G G A TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CTCCCATCTCGATCAAGTCCC 0.582 11 183 MLKL 197259 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 74725174 74725174 + Splice_Site SNP C C T rs144019045 byFrequency TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 aaacaacttacgcaatgcTGC 0.438 142 172 MYOCD 93649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 12655844 12655844 + Silent SNP G G A rs150316964 byFrequency TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 ACCCAGTGCCGAACTTTGGGG 0.552 56 76 TAOK1 57551 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 27849514 27849514 + Nonsense_Mutation SNP C C T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CATGGAAGTTCGACAACAGCC 0.398 54 78 SYNRG 11276 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 35913795 35913795 + Missense_Mutation SNP C C T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 AGAATATTCCCCAAAAAGGCT 0.433 39 64 KRT38 8687 hgsc.bcm.edu;broad.mit.edu 37 17 39595476 39595476 + Silent SNP G G C TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 TGCTCTTGAGGGAGAGCTGCT 0.657 31 43 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9084076 9084076 + Missense_Mutation SNP G G T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 AGAGGTGGGTGTAGTTGGGGT 0.483 16 136 CRTC1 23373 hgsc.bcm.edu;broad.mit.edu 37 19 18879357 18879357 + Silent SNP G G A TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 TCACCCAGGCGGGCTCCCAGC 0.751 9 19 ST3GAL3 6487 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 44363948 44363948 + Missense_Mutation SNP C C T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CAAAGAGTACCGCCTGACCCC 0.537 57 12 CFHR3 10878 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 196748322 196748322 + Missense_Mutation SNP A A C TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GACATTAAACATGGAGGTCTA 0.289 19 38 COX4I2 84701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 30231298 30231298 + Silent SNP T T C TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 TCTTCTTCATTGGATTCGCAG 0.562 30 103 HEATR5B 54497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 37268400 37268400 + Missense_Mutation SNP C C T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CAATGAATGACCAGTCCTAGA 0.388 26 77 REG1B 5968 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 79312681 79312681 + Missense_Mutation SNP A A G TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CCAGTGTCCCAGGACTTGTAG 0.542 33 64 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 170101367 170101367 + Missense_Mutation SNP C C T rs143115109 TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 ACAGTCGTTGCGTTTGTCACA 0.517 77 120 NCKAP1 10787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 183843586 183843586 + Missense_Mutation SNP T T C TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 AGGGAAGTCATAGTGTTAACA 0.279 14 27 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 ATAAGCATGACGACCTATGAT 0.393 32 47 EPHA3 2042 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 89259601 89259601 + Missense_Mutation SNP G G A TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 TACAGAAGGCGAATGGCTTGT 0.473 139 211 PVRL3 25945 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 110831116 110831116 + Missense_Mutation SNP A A G TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 TGCAACAATTACTCTGCATAA 0.393 46 42 PHLDB2 90102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 111685531 111685531 + Missense_Mutation SNP C C T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GCAGAAAAGACGCGGCTGCTC 0.478 63 47 ZNF148 7707 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 124953096 124953096 + Missense_Mutation SNP G G C TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 TCTCCACTATGAGTTCTCTTA 0.303 34 48 EGF 1950 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 110884445 110884445 + Missense_Mutation SNP G G A TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 AAAAAGCTGTGCAGCTTCAGG 0.423 64 105 CEP72 55722 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 620335 620335 + Missense_Mutation SNP G G A TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CCTGACTACCGCCTTTTTGTT 0.602 51 93 MYO10 4651 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 16689996 16689996 + Missense_Mutation SNP C C T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GATGTCGATCCCATTCTCCTT 0.463 14 57 NIPBL 25836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 36985704 36985704 + Nonsense_Mutation SNP C C T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 ACCTGATGGGCGATCTGTTTC 0.428 32 45 MAP1B 4131 hgsc.bcm.edu;broad.mit.edu 37 5 71495073 71495073 + Missense_Mutation SNP C C G TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GAAAAGACCACCAGCCCCCCC 0.473 6 86 PCDHA3 56145 hgsc.bcm.edu;broad.mit.edu 37 5 140182696 140182696 + Silent SNP C C T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GTGCCCTGGACGAGGTGGACG 0.667 11 150 SPRY4 81848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 141693969 141693969 + Nonsense_Mutation SNP C C T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CCATGAAGGACCAGCGGGCGC 0.662 30 28 ABCB5 340273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 20767947 20767947 + Silent SNP G G A TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GAAATACCTCGAAGAAAGCAC 0.353 60 170 FBXL13 222235 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 102453840 102453840 + Missense_Mutation SNP T T G rs141623741 TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CTGTTAATTCTAAGGCTCCTT 0.418 45 103 EPHB6 2051 hgsc.bcm.edu;broad.mit.edu 37 7 142561054 142561054 + Silent SNP G G T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 TATGGGTGCTGCTCCTGGTGT 0.587 9 101 SSPO 23145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 149516518 149516518 + RNA SNP G G A TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CGGGCATACCGTCCCCCTGGG 0.711 10 51 PXDNL 137902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 52233389 52233389 + Silent SNP G G A TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 AGCGCTCCTCGGCCTTCCTTG 0.527 140 129 ARHGAP39 80728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 145773361 145773361 + Missense_Mutation SNP T T C TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GAGCACCAGCTGCTGGCAGGG 0.706 15 15 RGS3 5998 hgsc.bcm.edu;ucsc.edu 37 9 116356592 116356592 + Silent SNP C C T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GCAACGGGAACCTGCAGAGGC 0.622 82 114 OLFML2A 169611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 127572206 127572206 + Missense_Mutation SNP C C T TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GTACGACCTACGGCAGCGCTT 0.592 63 101 DBH 1621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 136507441 136507441 + Missense_Mutation SNP C C G TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CTCCTGAAGCCCAATATCCCC 0.622 28 52 SLC4A1AP 22950 broad.mit.edu;ucsc.edu 37 2 27898498 27898498 + Missense_Mutation SNP G G A TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GAGAAGAAGCGTCTGAACAGA 0.398 53 65 FAM92A1P2 403315 broad.mit.edu;ucsc.edu 37 4 183959228 183959228 + RNA SNP A A G TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 AGCTTATGTAACCATTGTAAA 0.413 15 8 PRPF40B 25766 broad.mit.edu;ucsc.edu 37 12 50037528 50037528 + Missense_Mutation SNP A A G TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 AAGAGAAGACACAAGTCGGTG 0.463 28 23 VPS18 57617 broad.mit.edu;ucsc.edu 37 15 41193149 41193149 + Silent SNP C C T rs12914973 byFrequency TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GCCACCACCGCGCTTGTGTCC 0.632 51 13 CCDC109B 55013 broad.mit.edu;ucsc.edu 37 4 110581405 110581405 + Missense_Mutation SNP C C G TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 ACCTTGCCATCTAGAAAAGAA 0.328 11 8 DCHS2 54798 broad.mit.edu;ucsc.edu 37 4 155287390 155287390 + Silent SNP C C T rs78251264 byFrequency TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 TAAAAAGGGACGACACGTTTC 0.448 22 40 WNT16 51384 broad.mit.edu;hgsc.bcm.edu 37 7 120969426 120969426 + Frame_Shift_Del DEL C C - TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CCCTACGGAGCCCAAGGAAAC 0.647 33 24 ASB15 142685 broad.mit.edu;hgsc.bcm.edu 37 7 123269087 123269088 + Frame_Shift_Del DEL GA GA - TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CCAGAGCTATGACGATGAGAGG 0.455 55 162 PPP2R2A 5520 broad.mit.edu;hgsc.bcm.edu 37 8 26227744 26227761 + In_Frame_Del DEL AAGCCTCGCACAGTTCTG AAGCCTCGCACAGTTCTG - TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 GGAAAACAATAAGCCTCGCACAGTTCTGAAGCCTCGCA 0.431 18 37 TSPAN32 10077 broad.mit.edu;hgsc.bcm.edu 37 11 2337873 2337874 + Frame_Shift_Ins INS - - G TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 TTGGACCGCAAGGGCAAATACA 0.658 75 78 SLCO2B1 11309 broad.mit.edu;hgsc.bcm.edu 37 11 74904334 74904335 + Frame_Shift_Ins INS - - TG TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CCAGGTATGCTTGTCATCCATG 0.624 71 89 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42795608 42795609 + Frame_Shift_Ins INS - - C TCGA-HT-A619-01A-11D-A29Q-08 TCGA-HT-A619-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28c7b83b-417b-4a76-97cb-a6d8295c7122 eb32ff7d-ff3c-43c2-aee5-6fd5dddd08c9 CCTCCGCCCCACCCCCCAAAGG 0.609 88 18