Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	63269245	63269245	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	AAAACCTTCCGGTTTAGATGA	0.493	7	64
CRLF3	51379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	29112983	29112983	+	Silent	SNP	T	T	C			TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	GAGAGTCATATCCATCCTGTT	0.363	14	128
BAX	581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	49459501	49459501	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	GGTCTTTTTCCGAGTGGCAGC	0.587	11	86
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	109805553	109805553	+	Missense_Mutation	SNP	A	A	G			TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	CGGCACATAGACATGGCTGAC	0.647	5	34
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	80808942	80808942	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	GCAGAGCGCACGGGTGAGTGG	0.493	21	31
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	ATAAGCATGACGACCTATGAT	0.393	25	55
ARL13B	200894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	93714764	93714764	+	Missense_Mutation	SNP	G	G	A	rs139780924	by1000genomes	TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	TGGTAAAACCGCAACAGCAAA	0.299	15	29
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	14406753	14406753	+	Missense_Mutation	SNP	C	C	T	rs55687522		TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	GCCTCACGGACGTCTCAGAAC	0.567	33	75
RREB1	6239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	7240706	7240706	+	Missense_Mutation	SNP	T	T	A			TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	ATGCGATGCCTTCTTTTCTAC	0.423	37	106
MICAL1	64780	hgsc.bcm.edu;ucsc.edu	37	6	109773534	109773534	+	Silent	SNP	G	G	A	rs33997889	byFrequency	TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	TCTCCTCCACGGTGCGTCCAT	0.542	11	124
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	122130306	122130306	+	Missense_Mutation	SNP	C	C	A			TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	TCTTTAACAGCATTAAAGAAC	0.378	19	186
DOCK8	81704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	289509	289509	+	Splice_Site	SNP	G	G	A			TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	TACCTCATTAGGGTTGAACTG	0.388	5	38
SH3KBP1	30011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	19764444	19764444	+	Missense_Mutation	SNP	T	T	A			TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	ACCTCTCTTATTGGTTCTTAA	0.423	60	79
WDR44	54521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	117527112	117527112	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	GTTCCAGCACGCCCACCTCCT	0.522	98	202
PRDM10	56980	broad.mit.edu;ucsc.edu	37	11	129817095	129817095	+	Silent	SNP	C	C	T			TCGA-HW-7495-01A-11D-2024-08	TCGA-HW-7495-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	40a47122-c2cd-4688-99b9-64b2350ef155	af2a33f3-7c62-409d-b291-570872c2612c	CATCCAGATCCGTGTCCTCAC	0.597	26	68