Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MPP7 143098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 28345529 28345529 + Silent SNP T T C TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 GCTTAAATTCTAGTGTCCTTA 0.333 50 49 OR52I2 143502 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 4608789 4608789 + Missense_Mutation SNP C C G TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 CCTCCTATATCTTAATTCTCA 0.488 64 46 OR51L1 119682 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 5021019 5021019 + Silent SNP T T C TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 TTGGGAAGCATCTGTCTCCCA 0.463 5 34 MRGPRX3 117195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 18159642 18159642 + Missense_Mutation SNP C C T TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 CTGCAGGACACGCCTGAGGTG 0.562 28 11 OR9G4 283189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 56510829 56510829 + Silent SNP G G A rs149257582 TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 TACAGAGGGCGGTGGACATGG 0.478 15 191 PTGR2 145482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 74347933 74347933 + Missense_Mutation SNP A A G TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 ATTAAATTATAAAGACAAATT 0.358 51 66 ISLR 3671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 74467824 74467824 + Missense_Mutation SNP G G A TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 GGACAACATCGCCTGCACCTC 0.652 14 52 CRAMP1L 57585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 1706072 1706072 + Silent SNP C C T TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 GTGCCAAGGACGCCCACGTGC 0.706 10 16 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577538 7577538 + Missense_Mutation SNP C C T rs11540652 TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 GATGGGCCTCCGGTTCATGCC 0.572 26 41 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578263 7578263 + Nonsense_Mutation SNP G G A TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 CCTTCCACTCGGATAAGATGC 0.552 25 22 ZC3H4 23211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 47570840 47570840 + Silent SNP G G A TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 AGGTGGGCAGGGCGCGAGCCA 0.701 13 19 HIVEP3 59269 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 41978828 41978828 + Missense_Mutation SNP C C T TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 GGGAGAGCGCCCATGCCCCTT 0.632 31 39 CD1E 913 hgsc.bcm.edu;ucsc.edu 37 1 158325319 158325319 + Silent SNP G G A TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 GATTTCTAGCGGGGCTCATGG 0.478 4 33 OR2T1 26696 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 248570030 248570030 + Silent SNP C C T rs148427102 TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 CAGCCCTCTACGAGACAGTGA 0.493 36 49 MYH7B 57644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 33581234 33581234 + Missense_Mutation SNP G G A TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 AGCCGTGGCCGCCTCATGCGC 0.672 14 19 DGCR2 9993 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 19026633 19026633 + Splice_Site SNP G G A rs146027196 TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 AAGCATCATCGTCTGCAGGAA 0.622 14 33 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 21226157 21226157 + Missense_Mutation SNP C C T rs149273387 TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 ATCAGATTCCCGGACCCTCAA 0.408 122 242 SCN2A 6326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 166211024 166211024 + Missense_Mutation SNP G G C TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 ATAGGCAGCAGTGTAGAAAAA 0.388 30 52 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 ATAAGCATGACGACCTATGAT 0.393 28 50 ANKRD28 23243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 15719776 15719776 + Missense_Mutation SNP C C T TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 CCTGTAGAGTCCACAGAATTG 0.398 17 17 SATB1 6304 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 18435971 18435971 + Missense_Mutation SNP C C A TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 CTGTTAAAAGCCACACGTGCA 0.433 47 104 SLC4A7 9497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 27439832 27439832 + Missense_Mutation SNP G G C TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 ACACCACGAAGTTTTTTACAT 0.363 50 48 MYH15 22989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 108195254 108195254 + Missense_Mutation SNP G G A TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 CTGTTCTATAGTTTGACCTCT 0.338 28 26 HCN1 348980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 45262407 45262407 + Silent SNP C C T TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 CTTCATTTTTCGGCGTGGAGC 0.652 33 35 ERAP2 64167 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 96215430 96215430 + Missense_Mutation SNP C C T TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 CACAGAAAACCAATGTTTAAC 0.373 8 92 LIMK1 3984 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 73511062 73511062 + Missense_Mutation SNP C C G TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 CATGGGTGCTCTGAGCAAATC 0.597 18 40 LRRCC1 85444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 86021973 86021973 + Missense_Mutation SNP T T G TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 ATTGAAGGACTAAACACACTG 0.323 9 12 RASEF 158158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 85607825 85607825 + Missense_Mutation SNP G G C TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 TCTTACCATGGCCAGTTTCTC 0.473 82 184 ZNF189 7743 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 104170609 104170609 + Missense_Mutation SNP C C T TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 AAGTTTTAGTCGCAGTTCATT 0.413 37 112 CAMSAP1 157922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 138713009 138713009 + Silent SNP G G A TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 TGTAACTGTCGAAGAGACACT 0.567 107 112 PBDC1 51260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 75396760 75396760 + Missense_Mutation SNP C C G TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 TTGTTGAAGACTTCAACTATG 0.423 34 88 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76940431 76940431 + Splice_Site SNP C C T TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 TATTACCTACCTACATTGTTC 0.328 36 71 PLS3 5358 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 114882253 114882253 + Missense_Mutation SNP T T G TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 GTGGATTTAATTGATGCCATC 0.403 66 108 ZNF275 10838 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 152612569 152612569 + Silent SNP G G A TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 GGGGGGTGGCGGAGTTTAATG 0.607 19 19 CANT1 124583 broad.mit.edu;ucsc.edu 37 17 76991172 76991172 + Missense_Mutation SNP C C T TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 TCCACGCTGCCCTTGTAGCCC 0.652 3 3 AKAP5 9495 broad.mit.edu;hgsc.bcm.edu 37 14 64936370 64936374 + Frame_Shift_Del DEL AATAA AATAA - TCGA-HW-8319-01A-11D-2395-08 TCGA-HW-8319-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx fb65935e-13c0-445a-aa77-e8dde888957e cc240084-66ac-4c53-a3ee-12444b168db2 CTCTGATGATAATAAAATAAACAAT 0.341 21 86