Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ZNF33B 7582 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 43088769 43088769 + Silent SNP A A G TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 GCGTTCTCTGATGTATTGTGA 0.428 26 119 MRPL43 84545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 102739072 102739072 + Missense_Mutation SNP T T C TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 GCGGACAGCATAGGGGCTGGA 0.502 55 63 PACSIN3 29763 hgsc.bcm.edu;broad.mit.edu 37 11 47202192 47202192 + Silent SNP C C T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 GCCGCTCAGCCGCCGTGAAAA 0.677 7 79 DDX51 317781 hgsc.bcm.edu;broad.mit.edu 37 12 132625414 132625414 + Missense_Mutation SNP C C T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 CCCGAATCCCCGTCCCCATCT 0.617 8 131 ITGAE 3682 hgsc.bcm.edu;broad.mit.edu 37 17 3664729 3664729 + Missense_Mutation SNP C C T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 AGCCTGGGGACGGAGGTCAGG 0.557 8 106 RNF112 7732 hgsc.bcm.edu;broad.mit.edu 37 17 19316087 19316087 + Silent SNP T T A rs68012060 TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 CGCTGCCCCCTGCACTGCAGG 0.627 4 44 CNTD1 124817 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 40956252 40956252 + Silent SNP A A T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 GGTTTATGGTAAAACAGGCAG 0.438 29 36 CNTD1 124817 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 40956254 40956254 + Missense_Mutation SNP A A T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 TTTATGGTAAAACAGGCAGAG 0.438 28 37 CARD14 79092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 78169012 78169012 + Missense_Mutation SNP G G A TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 TCGGACCTGAGTGCCACGTCC 0.677 16 66 HMCN1 83872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 186056428 186056428 + Silent SNP C C T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 ATCAAGCTGGCGAAAGCAAGA 0.348 42 44 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 216062131 216062131 + Silent SNP G G A TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 GTGCCCCTGGGAGTGTCCATA 0.502 21 47 CTNNBL1 56259 hgsc.bcm.edu;broad.mit.edu 37 20 36431347 36431347 + Nonsense_Mutation SNP C C A TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 CAGACAACTGCCATAAGTTTG 0.478 5 85 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 ATAAGCATGACGACCTATGAT 0.393 32 46 ALPPL2 251 hgsc.bcm.edu;broad.mit.edu 37 2 233274354 233274354 + Silent SNP G G A TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 AGGACGTGGCGGTGTTCGCGC 0.667 15 18 CELSR3 1951 hgsc.bcm.edu;broad.mit.edu 37 3 48699299 48699299 + Missense_Mutation SNP C C T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 GAACCTGATGCAGGAGCTGTC 0.701 10 111 VPS8 23355 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 184714255 184714255 + Missense_Mutation SNP C C T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 GTACAAGAGACGCCAAGAAAT 0.413 9 47 TBC1D19 55296 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 26640408 26640408 + Nonsense_Mutation SNP C C T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 AGTTGGAGAACAGAAAGAACT 0.308 26 38 ENPEP 2028 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 111397908 111397908 + Missense_Mutation SNP A A G TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 TTGGAGGAGGACACCTACACG 0.622 25 191 NPY2R 4887 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 156135956 156135956 + Missense_Mutation SNP C C T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 TGCCTTCCAGCTTGCCGTTGA 0.517 11 40 ADAM28 10863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 24193003 24193003 + Silent SNP C C T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 AAGATGAGTGCGACCTGCCTG 0.433 8 35 ANGPT1 284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 108306212 108306212 + Silent SNP A A G TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 TTCCATCTTCACGATGTTGTA 0.343 18 82 EPPK1 83481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144940776 144940776 + Missense_Mutation SNP C C T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 TAGCGCTTGACGCGGTCGTCC 0.627 41 211 SPAG8 26206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 35811425 35811425 + Silent SNP G G A TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 TGAGCTCAGAGTCAGGGCCAG 0.627 32 140 PALM2-AKAP2 445815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 112898643 112898643 + Silent SNP C C T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 CTGATCACCACGAATCCCTGG 0.493 92 108 DOCK11 139818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 117695460 117695460 + Missense_Mutation SNP G G A TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 CTACTTGGACGCCTGCATTGA 0.378 19 35 ZFPL1 7542 broad.mit.edu;ucsc.edu 37 11 64855533 64855533 + Missense_Mutation SNP G G A TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 AGCTGACAGCGATCCCAACCT 0.662 21 171 MGARP 84709 broad.mit.edu;ucsc.edu 37 4 140187905 140187905 + Missense_Mutation SNP C C T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 TTATCATTATCGATGGTGACA 0.468 44 182 CLCA1 1179 broad.mit.edu;ucsc.edu 37 1 86957002 86957002 + Missense_Mutation SNP C C T TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 CTCATTGATGCTTTTGGGGCC 0.383 6 44 ZFHX4 79776 broad.mit.edu;hgsc.bcm.edu 37 8 77616608 77616608 + Frame_Shift_Del DEL C C - TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 TACAGAAATACATGGAACACC 0.498 94 163 TP53 7157 broad.mit.edu;hgsc.bcm.edu 37 17 7577576 7577582 + Frame_Shift_Del DEL GTTGTAG GTTGTAG - rs144340710 TCGA-HW-8320-01A-11D-2395-08 TCGA-HW-8320-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 25810971-a72b-4635-a466-98bfda6e656a e934d4ae-b158-4ffd-8151-ee7d7ded6e56 TACACATGTAGTTGTAGTGGATGGTGG 0.57 51 10