Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SLC6A5	9152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	20628628	20628628	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	GTGTCGCTGGGCCAGTTTGCC	0.567	28	57
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	95840746	95840746	+	Silent	SNP	G	G	A	rs150945397		TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	CTAACAATTCGCCAGGTCTGA	0.453	59	106
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	25963417	25963417	+	Missense_Mutation	SNP	C	C	G			TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	GGACTTGGTGCTCTGGGTTCT	0.687	34	42
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	GCACAAACACGCACCTCAAAG	0.542	33	11
FIZ1	84922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	56109002	56109002	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	GCGGTAGGGCCGCTCCCCGGT	0.692	42	55
SYCP1	6847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	115453058	115453058	+	Missense_Mutation	SNP	A	A	G			TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	AAACAATTTGAGAAGATTGCT	0.284	30	50
TADA1	117143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	166831463	166831463	+	Missense_Mutation	SNP	A	A	C			TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	ACAACAGCTGAAACAGCCTCC	0.468	42	88
ADCK3	56997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	227172955	227172955	+	Splice_Site	SNP	A	A	G			TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	CTCTCCCCAGATCATCAGGGC	0.622	24	246
TPTE	7179	hgsc.bcm.edu;broad.mit.edu	37	21	10973726	10973726	+	Missense_Mutation	SNP	T	T	C			TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	AACTCACCTTTCATTCATACG	0.378	21	88
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	ATAAGCATGACGACCTATGAT	0.393	21	37
TIGIT	201633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	114014405	114014405	+	Silent	SNP	C	C	G			TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	TGATGACAGGCACAATAGAAA	0.502	87	217
ENPEP	2028	hgsc.bcm.edu;ucsc.edu	37	4	111464025	111464025	+	Silent	SNP	G	G	A			TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	TAGCTACAGCGCTCTCCTTGA	0.343	10	97
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	107692592	107692592	+	Missense_Mutation	SNP	A	A	G			TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	TTCTTCCTGAAGGTCTTCAAG	0.363	52	96
ZNF169	169841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	97063233	97063233	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	TGATTGTGGGCGTGGCTTTGG	0.577	35	65
IFRD1	3475	broad.mit.edu;hgsc.bcm.edu	37	7	112112895	112112897	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	TTAAAACGATGAAGATTTCTCGT	0.374	24	80
FMNL1	752	broad.mit.edu;hgsc.bcm.edu	37	17	43323638	43323640	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-HW-A5KM-01A-11D-A27K-08	TCGA-HW-A5KM-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	326e0c99-d749-4f8f-8edd-1d0a5c82e07e	c9aec61a-d7df-402c-9734-1e35cd5f6c43	CGGAGGCAGCAGAAGGAGCCACT	0.567	64	125