Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PWWP2B 170394 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 134218474 134218474 + Missense_Mutation SNP G G A TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e CGTCTGTCCCGCAACCGCGAC 0.726 14 23 OR5AS1 219447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55798589 55798589 + Missense_Mutation SNP G G T TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e AAGTCCTCAGGTGGCAGAAGC 0.453 67 115 ZC3H13 23091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 46619598 46619598 + Silent SNP A A G TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e TATCAGATATAGTCTTGGTAT 0.413 53 107 C15orf43 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 45248953 45248953 + Missense_Mutation SNP G G A TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e TTGCGGCAGCGTTAGCCAGGA 0.582 33 87 LONP2 83752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 48296697 48296697 + Missense_Mutation SNP A A C TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e AGACTCAAAAAAATGCCTCAG 0.348 9 21 PSME3 10197 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 40990763 40990763 + Nonsense_Mutation SNP C C T TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e AATGTGGGTACAGCTCCTGAT 0.463 31 55 KCNAB2 8514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 6155592 6155592 + Missense_Mutation SNP G G T TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e CTCTTCAGGAGTGGGCGCCAT 0.632 48 42 CD40 958 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 44751286 44751286 + Silent SNP A A G TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e GCACCTCAGAAACAGACACCA 0.607 41 87 NCKAP1 10787 hgsc.bcm.edu;broad.mit.edu 37 2 183866755 183866755 + Missense_Mutation SNP G G A TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e TGGCCAAGGCGTGGGTATTCT 0.363 8 80 ZC3H15 55854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 187371527 187371527 + Missense_Mutation SNP C C G TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e TGTAGCCAGTCTTGAAAGATT 0.348 24 67 COL5A2 1290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 189898826 189898826 + Silent SNP G G A rs142895373 TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e CAATTTCAACGCCGAATTCCT 0.473 24 56 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e ATAAGCATGACGACCTATGAT 0.393 23 47 SCAND3 114821 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 28540332 28540332 + Missense_Mutation SNP A A G TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e agatcattaaaaatactgaag 0.353 20 42 PCLO 27445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 82578793 82578793 + Splice_Site SNP G G A TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e CACTCTTACCGTATAGCCCTC 0.463 68 171 SND1 27044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 127631024 127631024 + Missense_Mutation SNP G G A TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e AGAGGAGCCCGAAACCTCCCA 0.542 13 29 TNC 3371 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 117848575 117848575 + Missense_Mutation SNP G G A TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e TTCACACAGCGGCCGTGCTGG 0.582 92 201 MID1IP1 58526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 38664318 38664318 + Missense_Mutation SNP A A T TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e TTGCTGCGCGACGTGCCCCTG 0.632 32 53 NOTCH2 4853 broad.mit.edu;ucsc.edu 37 1 120491184 120491184 + Missense_Mutation SNP G G A TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e ATGGTACACCGCTGACCTAGG 0.512 29 33 UNC13D 201294 broad.mit.edu;ucsc.edu 37 17 73826535 73826535 + Missense_Mutation SNP G G A TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e GACTGTCACAGCCCCCAGCTC 0.682 5 9 TRPV6 55503 broad.mit.edu;ucsc.edu 37 7 142571891 142571891 + Missense_Mutation SNP A A G TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e GTCGCCAAAAATCATCTAGAA 0.547 5 37 HYLS1 219844 broad.mit.edu;ucsc.edu 37 11 125770123 125770123 + Missense_Mutation SNP T T C TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e GCAAATGGTGTCATACCCAGG 0.403 28 45 STAG3L4 64940 broad.mit.edu;ucsc.edu 37 7 66771046 66771046 + RNA SNP T T G TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e TGTTAACTTTTTCATCTGATC 0.388 52 84 CIC 23152 broad.mit.edu;ucsc.edu 37 19 42799059 42799059 + Missense_Mutation SNP C C T TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e CCGTGAGGTGCGCCAGAAGAT 0.632 23 51 XG 7499 broad.mit.edu;hgsc.bcm.edu 37 X 2670333 2670333 + Frame_Shift_Del DEL A A - TCGA-QH-A65V-01A-11D-A29Q-08 TCGA-QH-A65V-10A-01D-A29Q-08 Untested Somatic Phase_I WXS none Illumina GAIIx 03328f23-41c2-42b8-8c9c-1824338aa98b f5978804-96d3-4d66-92a0-b3075996bc9e GCTGGTGGGGACTTCCCTGTC 0.532 47 127