writing sdrf to LGG.merger.sdrf.txt ------------------------------------------------------------------ 2016-02-17 01:47:39.631612 . ['/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/LGG/22361814/infile1.input.tsv'] Make a softlink...... Flag: False. Processing input file to make a softlink...: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/LGG/22361814/infile1.input.tsv Make a softlink is done.