Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ACAD11 84129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 132349391 132349391 + Missense_Mutation SNP T T A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . ACAD11 NM_032169 exon7 c.A853T p.M285L CTTCCATTGATGG . 125.0 22.0 132.0 0.0 . 91 AKR1C3 8644 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 5144299 5144299 + Missense_Mutation SNP T T C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . AKR1C3 NM_003739 exon6 c.T577C p.C193R GTAGAATGTCATC . 155.0 60.0 206.0 1.0 . 515 AMER1 139285 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 63413037 63413037 + Missense_Mutation SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . . NM_152424 exon2 c.C130T p.P44S AGGATGGCTCTGA . 181.0 82.0 205.0 2.0 . . AMER3 205147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 131521437 131521437 + Missense_Mutation SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . . NM_152698 exon2 c.G1792A p.D598N TCCAGGGATGCCT . 47.0 21.0 65.0 0.0 . . ARX 170302 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 25033826 25033826 + Missense_Mutation SNP C C G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . ARX NM_139058 exon1 c.G29C p.C10S TCGGAGCAGCCCT . 361.0 83.0 341.0 0.0 . 130 ASB1 51665 ucsc.edu;bcgsc.ca 37 2 239353034 239353034 + Silent SNP T T C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . ASB1 NM_001040445 exon4 c.T546C p.P182P CCAGCCTCGATTC . 36.0 4.0 63.0 0.0 . 226 ASXL1 171023 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 31023622 31023622 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . ASXL1 NM_015338 exon12 c.A3107G p.N1036S AACCCAATTGGAA . 49.0 21.0 53.0 0.0 . 2057 AUTS2 26053 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 70252291 70252291 + Missense_Mutation SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . AUTS2 NM_015570 exon18 c.C2405T p.S802L CTCCGTCGTTCCC . 73.0 31.0 81.0 0.0 . 92 BCORL1 63035 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 129159156 129159156 + Missense_Mutation SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . BCORL1 NM_021946 exon6 c.C3880T p.H1294Y CGAAGGCACCTGT . 109.0 35.0 134.0 1.0 . 294 C10orf137 26098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 127426555 127426555 + Silent SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . C10orf137 NM_001202438 exon14 c.A1827G p.L609L TGTTCTAGAGGTA . 246.0 87.0 284.0 0.0 . 590 CA4 762 ucsc.edu;bcgsc.ca 37 17 58235786 58235786 + Silent SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . CA4 NM_000717 exon7 c.C723T p.P241P GGAGCCCATTCAG . 33.0 4.0 22.0 0.0 . 226 CCDC155 147872 ucsc.edu;bcgsc.ca 37 19 49901246 49901246 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . CCDC155 NM_144688 exon7 c.A475G p.T159A CAAGCCACAGCTG . 56.0 5.0 50.0 0.0 . 69 CCDC96 257236 ucsc.edu;bcgsc.ca 37 4 7043800 7043800 + Missense_Mutation SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . CCDC96 NM_153376 exon1 c.G866A p.G289D AGCATGCCCAGAT . 48.0 4.0 62.0 0.0 . 90 CDCA7 83879 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 174224139 174224139 + Missense_Mutation SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . CDCA7 NM_031942 exon3 c.G304A p.E102K ACTAACGAACTGG . 210.0 64.0 177.0 1.0 . 91 CFH 3075 broad.mit.edu;bcgsc.ca 37 1 196716375 196716375 + Missense_Mutation SNP C C T rs121913059 bycluster TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . CFH NM_000186 exon22 c.C3628T p.R1210C TCATCACGTTCTC . 1208.0 52.0 816.0 1.0 C|1.000;T|0.000 566 CNTN1 1272 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 41410483 41410483 + Splice_Site SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . CNTN1 NM_001843 exon19 c.2185-1G>A . TATTTAGCCTTTG . 125.0 57.0 126.0 0.0 . 1149 CNTRL 11064 ucsc.edu;bcgsc.ca 37 9 123931905 123931905 + Silent SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . CNTRL NM_007018 exon37 c.A6087G p.E2029E TTCAGAAAGGGAG . 46.0 4.0 74.0 0.0 . 661 COL6A3 1293 ucsc.edu;bcgsc.ca 37 2 238255185 238255185 + Missense_Mutation SNP T T C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . COL6A3 NM_004369 exon32 c.A7053G p.I2351M TCCAACTATCCCT . 47.0 4.0 83.0 0.0 . 526 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 113421218 113421218 + Missense_Mutation SNP A A T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . CSMD3 NM_198123 exon33 c.T5439A p.D1813E AACAACATCGTGG . 134.0 58.0 160.0 0.0 . 1132 DIDO1 11083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 61528282 61528282 + Missense_Mutation SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . DIDO1 NM_080797 exon7 c.C1655T p.P552L CCTGGAGGGGCTG . 84.0 29.0 93.0 0.0 . 96 DSP 1832 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 7583427 7583427 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . DSP NM_004415 exon24 c.A5932G p.M1978V ACAGCAATGCAGC . 126.0 56.0 132.0 1.0 . 518 DTNB 1838 bcgsc.ca;mdanderson.org 37 2 25611083 25611083 + Missense_Mutation SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . DTNB NM_021907 exon17 c.G1723A p.A575T CGAAGGCCTCCTG . 22.0 12.0 33.0 1.0 . 137 E2F8 79733 broad.mit.edu;ucsc.edu;mdanderson.org 37 11 19251120 19251120 + Nonsense_Mutation SNP T T A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . E2F8 NM_024680 exon10 c.A1774T p.K592X GGCTCTTTGCCCC . 141.0 63.0 190.0 1.0 . 91 EHHADH 1962 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 184911175 184911175 + Missense_Mutation SNP G G T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . EHHADH NM_001966 exon7 c.C1011A p.N337K CATCTTGTTTGCA . 108.0 33.0 166.0 0.0 . 93 ELTD1 64123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 79403615 79403615 + Missense_Mutation SNP A A T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . ELTD1 NM_022159 exon6 c.T637A p.L213I CAGATAACTTGTC . 371.0 114.0 296.0 0.0 . 24 EYA2 2139 ucsc.edu;bcgsc.ca 37 20 45702937 45702937 + Silent SNP T T C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . EYA2 NM_172110 exon7 c.T624C p.S208S GGCATCTCACAAC . 47.0 4.0 65.0 0.0 . 523 FAM182B 728882 bcgsc.ca;mdanderson.org 37 20 25755549 25755549 + RNA SNP C C A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . . . . . . CTGCAGCCTTCCT . 20.0 4.0 30.0 0.0 . . FCGBP 8857 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 40360959 40360959 + Missense_Mutation SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . FCGBP NM_003890 exon33 c.G15449A p.R5150H AAACAGCGGGTGG . 47.0 18.0 68.0 0.0 . 98 FCGBP 8857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 40360958 40360958 + Silent SNP G G T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . FCGBP NM_003890 exon33 c.C15450A p.R5150R AAAACAGCGGGTG . 47.0 19.0 69.0 0.0 . 98 GCNT3 9245 ucsc.edu;bcgsc.ca 37 15 59911038 59911038 + Missense_Mutation SNP T T C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . GCNT3 NM_004751 exon3 c.T601C p.S201P TCCTGGTCCAGGG . 48.0 4.0 50.0 0.0 . 91 GLT8D2 83468 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 104396997 104396997 + Missense_Mutation SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . GLT8D2 NM_031302 exon5 c.C200T p.A67V ATGGCAGCCATAG . 145.0 56.0 154.0 1.0 . 92 GPR12 2835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 27332981 27332981 + Silent SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . GPR12 NM_005288 exon2 c.G984A p.A328A CGAGCGCGCTCTC . 86.0 30.0 107.0 0.0 . 90 GRIN2B 2904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 13716219 13716219 + Missense_Mutation SNP G G C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . GRIN2B NM_000834 exon13 c.C3953G p.A1318G CGCGGGGCCAGGG . 186.0 93.0 184.0 0.0 . 231 HECTD1 25831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 31597908 31597908 + Missense_Mutation SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . HECTD1 NM_015382 exon25 c.C4669T p.R1557W TAGTCCGTGCTAT . 234.0 97.0 276.0 1.0 . 570 HIST1H2AG 8969 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 27101166 27101166 + Missense_Mutation SNP G G T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . HIST1H2AG NM_021064 exon1 c.G316T p.G106C GCACAGGGCGGTG . 134.0 53.0 186.0 0.0 . 68 HMGCLL1 54511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 55360266 55360266 + Missense_Mutation SNP C C G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . HMGCLL1 NM_019036 exon8 c.G836C p.C279S TCATGACAGTGAA . 160.0 64.0 203.0 0.0 . 94 IBSP 3381 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 88732600 88732600 + Missense_Mutation SNP A A T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . IBSP NM_004967 exon7 c.A492T p.E164D CGAAGAAAGCGAA . 151.0 53.0 197.0 0.0 . 90 IDS 3423 ucsc.edu;bcgsc.ca 37 X 148578000 148578000 + Silent SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . IDS NM_006123 exon6 c.T756C p.D252D CTCGGGATCGGGG . 52.0 5.0 58.0 0.0 . 130 IGF2BP1 10642 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 47117454 47117454 + Splice_Site SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . IGF2BP1 NM_006546 exon7 c.818+1G>A . CAAAACGTAAGTC . 61.0 24.0 85.0 0.0 . 226 IL17RD 54756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 57154328 57154328 + Missense_Mutation SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . IL17RD NM_017563 exon2 c.C140T p.A47V CTGCTGGCTGGCC . 95.0 31.0 85.0 0.0 . 500 ITGA10 8515 hgsc.bcm.edu;mdanderson.org 37 1 145532146 145532146 + Nonsense_Mutation SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . ITGA10 NM_003637 exon8 c.C790T p.R264X GGGGGCCGACCCG . 62.0 14.0 51.0 0.0 . 231 KIDINS220 57498 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 8871250 8871250 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . KIDINS220 NM_020738 exon30 c.T4916C p.I1639T GCTATAATTGGAT . 98.0 48.0 146.0 2.0 . 93 KLK12 43849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 51535232 51535232 + Silent SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . KLK12 NM_019598 exon4 c.C357T p.R119R GGTTACGCGGACG . 32.0 15.0 15.0 0.0 . 227 KRTAP9-3 83900 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 39389083 39389083 + Missense_Mutation SNP T T A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . KRTAP9-3 NM_031962 exon1 c.T330A p.S110R CACAAGTGTTTGT . 116.0 44.0 179.0 2.0 . 91 MAP1B 4131 ucsc.edu;bcgsc.ca 37 5 71499617 71499617 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . MAP1B NM_005909 exon6 c.A7240G p.S2414G TGGGGCAGCAACA . 44.0 4.0 68.0 0.0 . 155 MAPT 4137 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 44051811 44051811 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . MAPT NM_005910 exon4 c.A281G p.H94R AGCCCCACACGGA . 38.0 19.0 43.0 0.0 . 91 MED23 9439 ucsc.edu;bcgsc.ca 37 6 131946047 131946047 + Missense_Mutation SNP T T C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . MED23 NM_015979 exon4 c.A242G p.D81G AAGCAGTCATAAA . 48.0 4.0 55.0 0.0 . 24 MFN1 55669 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 179103488 179103488 + Silent SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . MFN1 NM_033540 exon15 c.C1794T p.G598G TATGGGCATCATT . 132.0 46.0 113.0 1.0 . 155 MIP 4284 ucsc.edu;bcgsc.ca 37 12 56845248 56845248 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . MIP NM_012064 exon4 c.T608C p.V203A CAGTACACCTGTA . 44.0 4.0 80.0 0.0 . 91 MLL4 8085 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36228046 36228046 + Missense_Mutation SNP C C A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . MLL4 NM_014727 exon33 c.C7432A p.Q2478K GCCGAGCAGCTCC . 28.0 9.0 47.0 0.0 . 697 MTNR1A 4543 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 187455191 187455191 + Silent SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . MTNR1A NM_005958 exon2 c.G705A p.R235R AAAATTCCTGAAG . 192.0 47.0 162.0 0.0 . 524 MYH1 4619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 10404040 10404040 + Silent SNP T T C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . MYH1 NM_005963 exon28 c.A3768G p.L1256L ATCTTCTAGAGCG . 108.0 25.0 114.0 0.0 . 171 MYO18B 84700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 26294307 26294307 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 MYO18B,colon,carcinoma,-1 MYO18B NM_032608 exon29 c.A4702G p.K1568E GGGGCCAAGAAGA . 78.0 34.0 77.0 0.0 . 142 MYO1E 4643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 59450529 59450529 + Silent SNP A A C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . MYO1E NM_004998 exon25 c.T2835G p.T945T ATTTTGAGTCCCA . 165.0 81.0 209.0 0.0 . 514 NBPF3 84224 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 21808194 21808194 + Missense_Mutation SNP G G C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . NBPF3 NM_032264 exon13 c.G1538C p.R513T ATTCATGCCAGCC . 385.0 84.0 502.0 0.0 . 92 NCAM2 4685 ucsc.edu;bcgsc.ca;mdanderson.org 37 21 22804446 22804446 + Missense_Mutation SNP A A C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . NCAM2 NM_004540 exon12 c.A1499C p.Y500S GTCCCTATGGAGT . 197.0 65.0 216.0 2.0 . 94 NMB 4828 ucsc.edu;bcgsc.ca 37 15 85198626 85198626 + Missense_Mutation SNP C C A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . NMB NM_205858 exon3 c.G340T p.G114C TTGTACCAGCAGC . 43.0 4.0 100.0 1.0 . 90 NXF3 56000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 102335094 102335094 + Missense_Mutation SNP C C A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . NXF3 NM_022052 exon11 c.G978T p.K326N TAACCTCTTGTGG . 88.0 37.0 76.0 0.0 . 205 PC 5091 ucsc.edu;bcgsc.ca 37 11 66633672 66633672 + Missense_Mutation SNP T T C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . PC NM_000920 exon10 c.A1171G p.T391A GGCCGGTGTCCGG . 36.0 5.0 42.0 1.0 . 228 PEBP1 5037 ucsc.edu;bcgsc.ca 37 12 118575893 118575893 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . PEBP1 NM_002567 exon2 c.A185G p.K62R CAGGGAAGCTCTA . 31.0 4.0 50.0 0.0 . 779 PGPEP1L 145814 ucsc.edu;bcgsc.ca 37 15 99512659 99512659 + Silent SNP T T C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . . NM_001102612 exon4 c.A366G p.A122A CCTGCCTGCATCT . 26.0 4.0 59.0 0.0 . . PIWIL1 9271 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 130834407 130834407 + Silent SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . PIWIL1 NM_004764 exon9 c.C939T p.N313N GTATAACAATAAG . 66.0 33.0 101.0 0.0 . 92 POLQ 10721 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 121158902 121158903 + Frame_Shift_Del DEL GG GG - novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 GG GG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . POLQ NM_199420 exon27 c.7325_7326del p.2442_2442del CAAAATGGTCTGA . 61.0 23.0 65.0 0.0 . 664 PRKDC 5591 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 48856412 48856412 + Splice_Site SNP C C A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . PRKDC NM_001081640 exon10 c.808+1G>T . ATCCTACCTGAGG . 129.0 57.0 166.0 2.0 . 1515 QSER1 79832 broad.mit.edu;bcgsc.ca 37 11 32987853 32987853 + Silent SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . QSER1 NM_001076786 exon9 c.A4590G p.E1530E ATTTGAACCTCCC . 95.0 7.0 111.0 2.0 . 95 RAB18 22931 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 27826828 27826828 + Missense_Mutation SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . RAB18 NM_001256410 exon8 c.G556A p.G186S TGTGATGGTGTAC . 81.0 31.0 96.0 0.0 . 227 RASGRF2 5924 ucsc.edu;bcgsc.ca 37 5 80503111 80503111 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . RASGRF2 NM_006909 exon21 c.A3014G p.E1005G CCATGGAGCTGGC . 52.0 4.0 56.0 0.0 . 725 RBMS2 5939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 56975266 56975266 + Missense_Mutation SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . RBMS2 NM_002898 exon7 c.C706T p.R236W AATGGACGGGCTT . 45.0 21.0 39.0 0.0 . 90 RNASEL 6041 hgsc.bcm.edu;broad.mit.edu 37 1 182551358 182551360 + In_Frame_Del DEL CTT CTT - novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 CTT CTT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . RNASEL NM_021133 exon4 c.1600_1602del p.534_534del GCTTCCCTTCTTT . 223.0 15.0 144.0 0.0 . 336 RTN1 6252 broad.mit.edu;bcgsc.ca 37 14 60194386 60194386 + Missense_Mutation SNP T T C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . RTN1 NM_021136 exon3 c.A1016G p.E339G GATGGTTCTGTCG . 74.0 6.0 68.0 0.0 . 516 RTP1 132112 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 186917604 186917604 + Missense_Mutation SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . RTP1 NM_153708 exon2 c.C538T p.R180C GCCAGCCGCCAGG . 32.0 18.0 29.0 0.0 . 155 SEMA5B 54437 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 122662337 122662337 + Missense_Mutation SNP T T A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . SEMA5B NM_001256347 exon4 c.A536T p.D179V GAGAAATCCCGGG . 26.0 14.0 46.0 0.0 . 157 SERINC2 347735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 31907019 31907019 + Silent SNP C C A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . SERINC2 NM_001199038 exon11 c.C1368A p.L456L CCCACTCCTCCTG . 35.0 30.0 54.0 0.0 . 90 SLC24A6 80024 ucsc.edu;bcgsc.ca 37 12 113758428 113758428 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . SLC24A6 NM_024959 exon6 c.T484C p.S162P GGTCAGAGAAGGC . 44.0 4.0 38.0 0.0 . 90 SLC5A7 60482 bcgsc.ca;mdanderson.org 37 2 108627264 108627264 + Missense_Mutation SNP C C A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . SLC5A7 NM_021815 exon9 c.C1690A p.L564I GCCTTCCTTGATG . 16.0 3.0 29.0 0.0 . 93 SLC6A2 6530 ucsc.edu;bcgsc.ca 37 16 55731912 55731912 + Missense_Mutation SNP T T C novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . SLC6A2 NM_001172501 exon10 c.T1364C p.L455P CTTTCCTTCTCGC . 44.0 4.0 78.0 0.0 . 526 SLC8A3 6547 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 70633754 70633754 + Silent SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . SLC8A3 NM_183002 exon2 c.G1386A p.K462K GAACTCCTTCTGG . 18.0 7.0 32.0 0.0 . 225 SYNE1 23345 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 152651593 152651593 + Missense_Mutation SNP T T G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . SYNE1 NM_182961 exon78 c.A14227C p.T4743P GACCTGTGCTGCG . 49.0 25.0 69.0 0.0 . 607 SYT15 83849 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 46968625 46968625 + Missense_Mutation SNP C C A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . SYT15 NM_031912 exon3 c.G311T p.C104F GCCGGGCAGGGGT . 27.0 5.0 22.0 0.0 . 22 TCF7L1 83439 hgsc.bcm.edu;broad.mit.edu 37 2 85536399 85536400 + In_Frame_Ins INS - - GCA novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . TCF7L1 NM_031283 exon12 c.1581_1582insGCA p.A527delinsAA TAAGGCTGCAGCC . 66.0 19.0 71.0 0.0 . 585 TGOLN2 10618 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 85552051 85552051 + Missense_Mutation SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . TGOLN2 NM_001206841 exon3 c.G1295A p.R432H TCCAAACGTTGGT . 114.0 35.0 99.0 0.0 . 22 TMEM260 0 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 57083918 57083918 + Missense_Mutation SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . . NM_017799 exon9 c.C959T p.S320L ATCCATCATTAGT . 167.0 56.0 186.0 2.0 . . TMEM92 162461 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 48351885 48351885 + Missense_Mutation SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . TMEM92 NM_153229 exon1 c.G23A p.G8D TCCCCGGCCTCGC . 34.0 10.0 22.0 0.0 . 90 TOPBP1 11073 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 133339026 133339026 + Missense_Mutation SNP C C A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . TOPBP1 NM_007027 exon20 c.G3344T p.G1115V CTTCGTCCACTGC . 71.0 28.0 105.0 1.0 . 540 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7577539 7577539 + Missense_Mutation SNP G G A rs121912651 bycluster TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 TP53,head_neck,carcinoma,+1 TP53 NM_000546 exon7 c.C742T p.R248W GCCTCCGGTTCAT . 46.0 31.0 114.0 1.0 . 70225 TP53BP2 7159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 224002032 224002032 + Nonsense_Mutation SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . TP53BP2 NM_001031685 exon3 c.C199T p.R67X ACATTCGCTCATT . 60.0 9.0 30.0 0.0 . 229 TPPP3 51673 ucsc.edu;bcgsc.ca 37 16 67424851 67424851 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . TPPP3 NM_016140 exon3 c.T164C p.V55A ATGTCCACATCGG . 32.0 4.0 55.0 1.0 . 90 TWISTNB 221830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 19738145 19738145 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . TWISTNB NM_001002926 exon4 c.T811C p.W271R CCTCCCAGATGCC . 158.0 59.0 192.0 0.0 . 91 USP15 9958 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 62775287 62775287 + Missense_Mutation SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . USP15 NM_001252078 exon9 c.C932T p.P311L ACACACCTCCACT . 71.0 31.0 79.0 0.0 . 1084 VPS26B 112936 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 134113163 134113163 + Silent SNP G G A novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . VPS26B NM_052875 exon4 c.G696A p.E232E GTACGAGATCATG . 52.0 21.0 87.0 1.0 . 90 ZNF208 7757 hgsc.bcm.edu;bcgsc.ca 37 19 22171610 22171610 + Silent SNP C C T rs201303510 TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . ZNF208 NM_007153 exon2 c.G105A p.E35E GTAGTTCTCTAAC . 155.0 14.0 179.0 0.0 . 7 ZNF350 59348 broad.mit.edu;bcgsc.ca 37 19 52469455 52469455 + Missense_Mutation SNP A A G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . ZNF350 NM_021632 exon5 c.T251C p.V84A TGATCAACTTTCC . 89.0 5.0 113.0 0.0 . 227 ZNF490 57474 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 12721447 12721447 + Silent SNP C C T novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . ZNF490 NM_020714 exon1 c.G48A p.E16E TTGCTCCTCGAGG . 27.0 7.0 38.0 0.0 . 90 ZNF676 163223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 22364341 22364341 + Missense_Mutation SNP C C G novel TCGA-BC-A216-01A-11D-A152-10 TCGA-BC-A216-11A-11D-A152-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c1d9ed06-7498-4c6c-a0de-dbf28e868109 baf0c971-0005-4e18-bfdf-a2d71a3aff12 . ZNF676 NM_001001411 exon3 c.G178C p.E60Q AATCTTCTATGCC . 115.0 54.0 122.0 0.0 . 90