Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABI2	10152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	204193320	204193320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ABI2	NM_005759	exon1	c.G83T	p.R28L	TGGAACGGGTGGC	.	80.0	34.0	104.0	0.0	.	90
ACVRL1	94	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52307458	52307458	+	Silent	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ACVRL1	NM_000020	exon4	c.C429T	p.V143V	GCATGTCCGACGG	.	21.0	7.0	54.0	0.0	.	521
ADAMTSL2	9719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136402628	136402628	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ADAMTSL2	NM_014694	exon3	c.G192A	p.G64G	TTGCGGGGGTGGG	.	60.0	25.0	115.0	0.0	.	91
AKR1C1	1645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5009199	5009199	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	AKR1C1	NM_001353	exon3	c.T333C	p.V111V	TTATGTTGACCTC	.	311.0	137.0	347.0	0.0	.	516
ANKRD11	29123	ucsc.edu;bcgsc.ca	37	16	89351544	89351544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	ANKRD11,NS,carcinoma,+1	ANKRD11	NM_001256183	exon9	c.T1406C	p.F469S	TTTCCGAAGCGAA	.	42.0	4.0	43.0	0.0	.	139
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	9182491	9182491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ANKRD12	NM_001083625	exon2	c.A61G	p.M21V	AGCAATATGGTAG	.	53.0	35.0	81.0	0.0	.	92
ANXA13	312	hgsc.bcm.edu;bcgsc.ca	37	8	124701110	124701112	+	Frame_Shift_Del	DEL	CCG	CCG	-	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	CCG	CCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ANXA13	NM_001003954	exon10	c.840_841del	p.280_281del	ACTTTACCGAGAG	.	115.0	16.0	184.0	0.0	.	93
ARHGEF12	23365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120317715	120317715	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ARHGEF12	NM_015313	exon18	c.G1510C	p.E504Q	GATGCAGAGCGAG	.	143.0	42.0	217.0	0.0	.	661
ARMC3	219681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23297251	23297251	+	Silent	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ARMC3	NM_173081	exon15	c.C1876A	p.R626R	TATGGACGAAGTA	.	138.0	21.0	151.0	0.0	.	90
ATRIP	84126	broad.mit.edu;bcgsc.ca	37	3	48506379	48506379	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ATRIP	NM_130384	exon12	c.G2205A	p.K735K	GGACAAGCTCTTC	.	120.0	7.0	166.0	0.0	.	23
BACE2	25825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	42622762	42622762	+	Silent	SNP	T	T	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	BACE2	NM_138992	exon7	c.T1068A	p.P356P	CTTCCCTAAAATC	.	209.0	96.0	218.0	0.0	.	92
BAG6	7917	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31608198	31608198	+	Silent	SNP	T	T	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	BAG6	NM_004639	exon22	c.A3012T	p.S1004S	CTCAGCTGAAGCT	.	63.0	35.0	42.0	1.0	.	154
BAIAP2L2	80115	ucsc.edu;bcgsc.ca	37	22	38483254	38483254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	BAIAP2L2	NM_025045	exon11	c.A1136G	p.E379G	TACGCCTCGGGGA	.	36.0	5.0	63.0	0.0	.	91
BCMO1	53630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81303890	81303890	+	Missense_Mutation	SNP	A	A	G	rs144501132	byfrequency	TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	BCMO1	NM_017429	exon7	c.A970G	p.I324V	GACGTCATTGCCT	.	50.0	11.0	92.0	0.0	A|1.000;G|0.000	90
CDH22	64405	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	44856179	44856179	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CDH22	NM_021248	exon4	c.638delG	p.G213fs	TGCTCGCCGTCCA	.	54.0	30.0	62.0	0.0	.	95
CECR1	51816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17662466	17662466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CECR1	NM_017424	exon9	c.G1443T	p.K481N	ACTGTACCTGCAG	.	121.0	62.0	164.0	0.0	.	91
CHTF18	63922	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	845334	845334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CHTF18	NM_022092	exon16	c.C2153A	p.T718N	GGATCACCTTCCC	.	52.0	27.0	48.0	0.0	.	227
CLK4	57396	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178040789	178040789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CLK4	NM_020666	exon6	c.G598A	p.A200T	GAGCTGCTTCACG	.	168.0	64.0	228.0	1.0	.	359
CLK4	57396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178040784	178040784	+	Silent	SNP	A	A	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CLK4	NM_020666	exon6	c.T603A	p.A201A	TGAACGAGCTGCT	.	173.0	65.0	231.0	0.0	.	359
COL7A1	1294	broad.mit.edu;mdanderson.org	37	3	48630129	48630129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	COL7A1	NM_000094	exon7	c.A850G	p.N284D	GGACGTTCACCTG	.	28.0	7.0	51.0	2.0	.	160
CPNE5	57699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36712088	36712088	+	Silent	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CPNE5	NM_020939	exon19	c.C1446A	p.P482P	GGACATGGGGAGC	.	80.0	40.0	119.0	0.0	.	91
CSMD2	114784	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34312563	34312563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CSMD2	NM_052896	exon6	c.A835G	p.S279G	TGCTGCTGATAAC	.	46.0	12.0	53.0	0.0	.	103
CTC1	80169	ucsc.edu;bcgsc.ca	37	17	8131829	8131829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CTC1	NM_025099	exon22	c.T3506C	p.V1169A	AATGGGACGATCT	.	44.0	4.0	99.0	0.0	.	93
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10992757	10992757	+	Silent	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CTNND2	NM_001332	exon19	c.G3117T	p.S1039S	TGAAGACGAGGCT	.	123.0	60.0	159.0	0.0	.	293
CUL4B	8450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	119669737	119669737	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CUL4B	NM_003588	exon18	c.T2162G	p.L721R	CACTGAAGTTTCC	.	573.0	136.0	574.0	0.0	.	227
CYTH2	9266	ucsc.edu;bcgsc.ca	37	19	48981822	48981822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	CYTH2	NM_017457	exon11	c.A1088G	p.E363G	AGGAGGAGAAGGA	.	46.0	4.0	67.0	0.0	.	228
DDX60	55601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169201507	169201507	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DDX60	NM_017631	exon14	c.G1957C	p.E653Q	AATGTTCTTTCCA	.	247.0	144.0	307.0	0.0	.	25
DDX60L	91351	broad.mit.edu;bcgsc.ca	37	4	169382864	169382864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DDX60L	NM_001012967	exon5	c.A592G	p.T198A	AAAAAGTTTGGTT	.	102.0	5.0	125.0	2.0	.	69
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	169382958	169382958	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DDX60L	NM_001012967	exon5	c.G498A	p.W166X	CATTCCCCAGGAA	.	89.0	30.0	114.0	0.0	.	69
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182823304	182823304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DHX9	NM_001357	exon6	c.A617G	p.D206G	GTCCTGATCACAA	.	166.0	100.0	223.0	0.0	.	92
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196825086	196825086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DNAH7	NM_018897	exon18	c.T2789C	p.L930S	GATGCCAAAATAA	.	98.0	44.0	108.0	0.0	.	102
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11775087	11775087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DNAH9	NM_001372	exon52	c.A10226T	p.Y3409F	GGCCCTACCTGAG	.	77.0	66.0	154.0	0.0	.	168
DNAJC6	9829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	65775451	65775451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DNAJC6	NM_001256864	exon1	c.G23A	p.R8Q	GCTACCGGAAAAA	.	120.0	29.0	146.0	0.0	.	272
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28650707	28650707	+	Silent	SNP	A	A	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DSC2	NM_024422	exon14	c.T2235A	p.P745P	ATCTCCAGGAGCT	.	114.0	73.0	166.0	0.0	.	517
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56480865	56480865	+	Missense_Mutation	SNP	C	C	T	rs200851382		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DST	NM_001723	exon24	c.G7400A	p.R2467H	TTTCTACGGGAGG	.	122.0	30.0	112.0	0.0	C|0.999;T|0.001	523
DTNA	1837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	32438291	32438291	+	Silent	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DTNA	NM_001390	exon15	c.A1494G	p.E498E	GCATGAACAAGCT	.	74.0	42.0	113.0	0.0	.	153
DYTN	391475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207530732	207530732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	DYTN	NM_001093730	exon10	c.C1002A	p.N334K	GTATTGGTTTAAC	.	283.0	131.0	364.0	1.0	.	23
ERGIC3	51614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34130635	34130635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ERGIC3	NM_015966	exon4	c.C312A	p.F104L	CCTGTTCAAGCAA	.	140.0	53.0	150.0	0.0	.	585
FAM207A	85395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46396679	46396679	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	.	NM_058190	exon6	c.G654A	p.L218L	GACGCTGGCCCGG	.	35.0	7.0	27.0	0.0	.	.
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39357273	39357273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	FREM2	NM_207361	exon5	c.C5708T	p.P1903L	TCATTCCCATCAG	.	182.0	120.0	189.0	0.0	.	100
FSTL4	23105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132534838	132534838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	FSTL4	NM_015082	exon16	c.G2478C	p.E826D	TGACACCTCACAC	.	66.0	25.0	86.0	0.0	.	91
GAREM	64762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29890226	29890226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	.	NM_022751	exon3	c.G323T	p.S108I	TCCACACTGTTGA	.	179.0	50.0	275.0	0.0	.	.
GEMIN4	50628	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	648872	648872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	GEMIN4	NM_015721	exon2	c.A2411G	p.Q804R	TGGGCCTGGGAGG	.	77.0	25.0	86.0	0.0	.	206
GPR151	134391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145895523	145895523	+	Missense_Mutation	SNP	C	C	T	rs181265546	alternate_allele	TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	GPR151	NM_194251	exon1	c.G154A	p.V52M	TTCCCACGAAGCC	.	105.0	17.0	134.0	0.0	C|0.999;G|0.000	92
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104449365	104449365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	GRIN3A	NM_133445	exon2	c.G817T	p.D273Y	TCCAGTCTTCCTG	.	212.0	77.0	258.0	0.0	.	96
GRM1	2911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146755325	146755325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	GRM1	NM_000838	exon9	c.C2978T	p.S993F	TGCCGTCCCACCT	.	44.0	11.0	72.0	0.0	.	1080
GSDMC	56169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	130777987	130777987	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	GSDMC	NM_031415	exon4	c.G457C	p.D153H	GGTTGTCCCCTCT	.	53.0	18.0	110.0	0.0	.	93
HGD	3081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120365198	120365198	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	HGD	NM_000187	exon9	c.A565T	p.S189C	CTATGCTGAACCG	.	41.0	20.0	45.0	0.0	.	68
HIBCH	26275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191155206	191155206	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	HIBCH	NM_014362	exon5	c.T310G	p.S104A	CTTCCGAGATCAC	.	135.0	58.0	136.0	0.0	.	90
HIST1H3F	8968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26250628	26250628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	HIST1H3F	NM_021018	exon1	c.A206G	p.Q69R	AGACGCTGGAATG	.	194.0	104.0	191.0	1.0	.	68
HOXC4	3221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54447739	54447739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	HOXC4	NM_014620	exon3	c.C33A	p.N11K	CTCTAACTACATC	.	87.0	20.0	112.0	0.0	.	91
HRH4	59340	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22057509	22057509	+	Silent	SNP	C	C	A	rs115905515	byfrequency;alternate_allele	TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	HRH4	NM_021624	exon3	c.C1156A	p.R386R	CACAGTCGGTCAG	.	80.0	30.0	83.0	0.0	C|0.998;T|0.002	92
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31777908	31777908	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	HSPA1L	NM_005527	exon2	c.A1842G	p.Q614Q	TCCTCCTTGGTAG	.	413.0	120.0	217.0	0.0	.	230
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	94225544	94225544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	IDE	NM_004969	exon20	c.A2377G	p.I793V	AGTATATCTCGAT	.	186.0	53.0	282.0	0.0	.	92
IDH3G	3421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153055245	153055245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	IDH3G	NM_004135	exon5	c.C268T	p.H90Y	TCACGTGCACCTC	.	38.0	12.0	66.0	0.0	.	90
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105011223	105011223	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	IL1RAPL2	NM_017416	exon11	c.T1630C	p.L544L	AGCAAATTAAATT	.	210.0	109.0	246.0	0.0	.	194
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	3599577	3599577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	IRX1	NM_024337	exon2	c.C515A	p.T172K	CCCTCACGCAGGT	.	227.0	116.0	236.0	0.0	.	228
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31372494	31372494	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ITGAX	NM_000887	exon9	c.T972C	p.D324D	GAAAGATATTCAA	.	96.0	65.0	128.0	0.0	.	229
JMJD7-PLA2G4B	8681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42126945	42126945	+	Silent	SNP	C	C	T	rs140704362		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	JMJD7-PLA2G4B	NM_005090	exon2	c.C72T	p.C24C	GCTCTGCGTGCCT	.	54.0	17.0	105.0	0.0	C|1.000;T|0.000	135
KCNC4	3749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110775555	110775555	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	KCNC4	NM_001039574	exon4	c.G1842A	p.S614S	CCTCTCGTCCAAC	.	37.0	25.0	69.0	0.0	.	154
KCNJ3	3760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	155555841	155555841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	KCNJ3	NM_001260509	exon1	c.C554A	p.S185Y	AGATGTCCCAGCC	.	79.0	17.0	87.0	0.0	.	92
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113737618	113737618	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	KIAA1407	NM_020817	exon8	c.T1070A	p.L357Q	ACCTTCAGCTGAA	.	74.0	16.0	86.0	0.0	.	92
KLF16	83855	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1863102	1863102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	KLF16	NM_031918	exon1	c.C395T	p.P132L	CAGTCCGGGAAGG	.	25.0	5.0	29.0	0.0	.	90
LILRA1	11024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55111991	55111991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	LILRA1	NM_006863	exon9	c.C1327A	p.L443I	AACACCCTCAGCC	.	62.0	15.0	103.0	0.0	.	93
LILRA5	353514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54823336	54823336	+	Silent	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	LILRA5	NM_181879	exon4	c.G207T	p.G69G	CAGGGTCCCCTGA	.	204.0	122.0	297.0	1.0	.	91
LINC00862	554279	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200311816	200311816	+	RNA	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	.	.	.	.	.	TCCAATCGCTGCC	.	138.0	69.0	142.0	0.0	.	.
LOC100653515	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76888033	76888033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	.	NM_001243540	exon3	c.G553T	p.G185C	GCTGGCCCAACTC	.	238.0	144.0	179.0	0.0	.	.
LOC728819	0	ucsc.edu;mdanderson.org	37	2	43903342	43903342	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	.	NM_001101330	exon1	c.C120T	p.H40H	GTGCTCGTGGTCT	.	377.0	173.0	448.0	0.0	.	.
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62936605	62936605	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	LPHN3	NM_015236	exon23	c.T4389C	p.A1463A	ACCGGCTCATTTG	.	86.0	56.0	69.0	0.0	.	508
MALT1	10892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56401614	56401614	+	Splice_Site	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	MALT1	NM_006785	exon12	c.1475+1G>A	.	TGCCACGTAAGAA	.	117.0	73.0	198.0	0.0	.	660
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	94901825	94901825	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	MCTP2	NM_001159643	exon9	c.G1285C	p.E429Q	AAGCATGAGGAAC	.	176.0	95.0	182.0	0.0	.	93
MYLK	4638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123411616	123411616	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	MYLK	NM_053025	exon19	c.C3531T	p.G1177G	CGCCTGGCCAGCG	.	48.0	24.0	81.0	0.0	.	365
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26462898	26462898	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	MYO3A	NM_017433	exon30	c.T3705C	p.A1235A	GGAAGCTATGATC	.	136.0	61.0	156.0	0.0	.	1007
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47030821	47030821	+	Silent	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	NBEAL2	NM_015175	exon5	c.C423G	p.L141L	GCTTCTCTGCGAG	.	74.0	29.0	91.0	0.0	.	69
NBR1	4077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41345518	41345518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	NBR1	NM_031862	exon12	c.C1387T	p.H463Y	CTTTCTCACAAAG	.	227.0	32.0	182.0	0.0	.	130
NID2	22795	ucsc.edu;bcgsc.ca	37	14	52534860	52534860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	NID2	NM_007361	exon2	c.T250C	p.S84P	GAGTGGAGATGAT	.	36.0	4.0	51.0	0.0	.	158
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164272591	164272591	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	NPY5R	NM_006174	exon4	c.T1166A	p.V389E	TCCATGTGGTAAC	.	154.0	86.0	207.0	0.0	.	523
OR10P1	121130	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56030750	56030750	+	Silent	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	OR10P1	NM_206899	exon1	c.C75A	p.G25G	GCAGGGCCCCCTG	.	105.0	26.0	176.0	1.0	.	69
OSBPL6	114880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179170928	179170928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	OSBPL6	NM_001201482	exon3	c.A17G	p.K6R	ATGAGAAGGGCAT	.	83.0	46.0	110.0	0.0	.	69
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30724910	30724910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PCDH7	NM_032457	exon1	c.C1866A	p.S622R	GGGCAGCACTACG	.	89.0	36.0	68.0	0.0	.	229
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30725405	30725405	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PCDH7	NM_032457	exon1	c.T2361A	p.N787K	AGGAAATCCCTTC	.	89.0	38.0	104.0	0.0	.	229
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140209550	140209550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PCDHA6	NM_018909	exon1	c.G1874A	p.G625E	GCGTGGGGCTGTA	.	118.0	49.0	130.0	0.0	.	92
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140347607	140347607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PCDHAC2	NM_031883	exon1	c.A1256G	p.Y419C	ACTCCTATACACT	.	92.0	49.0	61.0	0.0	.	26
PCDHB7	56129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140554546	140554546	+	Silent	SNP	G	G	A	rs145014054	alternate_allele	TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PCDHB7	NM_018940	exon1	c.G2130A	p.R710R	GGTGCGGCTGTGC	.	177.0	28.0	198.0	0.0	G|1.000;T|0.000	95
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41967431	41967431	+	Silent	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PDZRN4	NM_001164595	exon10	c.G2850T	p.L950L	GCACCTGGTTAGG	.	60.0	14.0	91.0	0.0	.	296
PIGN	23556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	59768329	59768329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PIGN	NM_176787	exon22	c.A2056G	p.I686V	TAATAATTTGATT	.	56.0	37.0	81.0	0.0	.	227
PLA2G3	50487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	31533849	31533849	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PLA2G3	NM_015715	exon4	c.A913T	p.K305X	GCTGCTTCTGTCG	.	189.0	101.0	304.0	0.0	.	226
PLEKHO1	51177	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	150131276	150131276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PLEKHO1	NM_016274	exon6	c.C788T	p.P263L	TGACGCCCACAGA	.	303.0	15.0	117.0	0.0	.	226
PLEKHO1	51177	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	150131673	150131673	+	Silent	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PLEKHO1	NM_016274	exon6	c.C1185G	p.L395L	CCACCTCAGACAG	.	390.0	16.0	165.0	0.0	.	226
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131912231	131912231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	PLXNA4	NM_020911	exon7	c.C1861T	p.P621S	TCCGGGGCACCTC	.	46.0	21.0	115.0	0.0	.	91
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109381074	109381074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	RANBP2	NM_006267	exon20	c.G4079A	p.S1360N	GTAACAGCTGCTC	.	112.0	53.0	157.0	0.0	.	675
RECQL	5965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21643210	21643210	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	RECQL	NM_032941	exon5	c.G317C	p.G106A	TCCTTTCCAGCCA	.	94.0	88.0	175.0	0.0	.	228
RELN	5649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103276844	103276844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	RELN	NM_173054	exon18	c.G2141A	p.S714N	CCAAAGCTTTCAG	.	100.0	39.0	202.0	1.0	.	574
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72968729	72968729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	RIMS1	NM_014989	exon18	c.C2968A	p.P990T	CGTTCTCCAACCA	.	104.0	41.0	98.0	0.0	.	144
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77629195	77629195	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ROBO2	NM_002942	exon16	c.A2426C	p.Q809P	GTATTCAATACCG	.	98.0	86.0	206.0	0.0	.	328
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10467732	10467732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	RP1L1	NM_178857	exon4	c.A3876T	p.L1292F	TTCAGCTAACTGC	.	49.0	26.0	132.0	0.0	.	139
RPS27A	6233	ucsc.edu;bcgsc.ca	37	2	55462628	55462628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	RPS27A	NM_001135592	exon6	c.G386A	p.G129E	GTGCTGGGGTGTT	.	35.0	4.0	49.0	0.0	.	91
SAA1	6288	hgsc.bcm.edu;broad.mit.edu	37	11	18290820	18290820	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SAA1	NM_199161	exon3	c.170delG	p.R57fs	ATGCTCGGGGGAA	.	209.0	60.0	217.0	0.0	.	650
SAA2	6289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18267513	18267513	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SAA2	NM_030754	exon3	c.174delG	p.G58fs	ATAGTTCCCCCGA	.	372.0	60.0	429.0	0.0	.	514
SENP2	59343	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185318579	185318579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SENP2	NM_021627	exon5	c.G385A	p.D129N	ATAAGTGACTATC	.	186.0	89.0	166.0	1.0	.	658
SGOL2	151246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201400832	201400832	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SGOL2	NM_001160046	exon4	c.G354C	p.L118F	TAACTTGATAACT	.	97.0	40.0	101.0	0.0	.	94
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49148299	49148299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SHC4	NM_203349	exon8	c.C1093T	p.H365Y	CGGCATGGCTATC	.	123.0	37.0	163.0	0.0	.	95
SHOX2	6474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	157820591	157820591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SHOX2	NM_003030	exon3	c.G503A	p.R168Q	TTGGTCCGACTTC	.	202.0	95.0	264.0	1.0	.	90
SHPRH	257218	broad.mit.edu;bcgsc.ca	37	6	146248354	146248354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SHPRH	NM_173082	exon15	c.A3199G	p.K1067E	TTCCTTTGTGTTC	.	111.0	5.0	128.0	0.0	.	92
SLC12A5	57468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	44686186	44686186	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SLC12A5	NM_001134771	exon26	c.T3362G	p.L1121R	AGCACCTGGACCG	.	174.0	67.0	204.0	0.0	.	156
SLC39A13	91252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47436693	47436693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SLC39A13	NM_001128225	exon9	c.G1023T	p.L341F	CCTCTTGGAAGAA	.	127.0	48.0	136.0	0.0	.	90
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75805298	75805298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SLC44A5	NM_152697	exon4	c.G70T	p.D24Y	CTGGGTCATATGT	.	65.0	14.0	74.0	0.0	.	95
SLC4A4	8671	broad.mit.edu;bcgsc.ca	37	4	72412081	72412081	+	Silent	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SLC4A4	NM_001098484	exon19	c.T2457C	p.Y819Y	AGGGTATCACTTG	.	149.0	6.0	160.0	1.0	.	95
SLFN12	55106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33749277	33749277	+	Silent	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SLFN12	NM_018042	exon2	c.C771A	p.L257L	GTCATCGAGGTCA	.	167.0	60.0	122.0	0.0	.	91
SORL1	6653	ucsc.edu;bcgsc.ca	37	11	121474906	121474906	+	Silent	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SORL1	NM_003105	exon33	c.A4524G	p.T1508T	AGCCACACACAGC	.	50.0	4.0	52.0	0.0	.	228
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48629417	48629417	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SPATA20	NM_022827	exon14	c.G1833A	p.A611A	GAGTGCGTGGCTC	.	248.0	81.0	223.0	0.0	.	90
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152583243	152583243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SYNE1	NM_182961	exon101	c.G18896T	p.W6299L	CTTTCCCATTTCA	.	212.0	49.0	238.0	0.0	.	607
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64518635	64518635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SYNE2	NM_182914	exon48	c.G8004T	p.L2668F	TGCCTTGACCACT	.	252.0	126.0	291.0	0.0	.	164
SYT3	84258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51133064	51133064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	SYT3	NM_032298	exon3	c.C1039A	p.R347S	TCTTGCGGTCAGG	.	35.0	6.0	91.0	0.0	.	155
TBC1D14	57533	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7026792	7026792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TBC1D14	NM_001113361	exon13	c.T1819C	p.F607L	GACGTGTTCTGTC	.	203.0	47.0	276.0	1.0	.	92
TCF7L1	83439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	85361140	85361140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TCF7L1	NM_031283	exon2	c.C251A	p.A84E	CGCAGGCGGAGAG	.	41.0	24.0	80.0	0.0	.	585
TELO2	9894	hgsc.bcm.edu;bcgsc.ca	37	16	1551758	1551758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TELO2	NM_016111	exon11	c.G1456C	p.D486H	GGCTCTGACTCGG	.	37.0	12.0	49.0	0.0	.	90
TMEM175	84286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	944240	944240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TMEM175	NM_032326	exon4	c.C224A	p.A75E	TTCTGGCAACACG	.	111.0	44.0	182.0	0.0	.	90
TMPPE	643853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33134374	33134374	+	Silent	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TMPPE	NM_001039770	exon2	c.G1314C	p.L438L	GCTACCCAGCCTC	.	79.0	15.0	86.0	0.0	.	90
TOM1	10043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35717981	35717981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TOM1	NM_001135732	exon3	c.A167G	p.K56R	TAAAGAAGAGAAT	.	71.0	24.0	104.0	0.0	.	91
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	rs28934576		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	TP53,brain,glioma,-1	TP53	NM_000546	exon8	c.G818A	p.R273H	CAAACACGCACCT	.	33.0	27.0	61.0	0.0	C|0.002;G|0.998	70225
TREM2	54209	broad.mit.edu;bcgsc.ca	37	6	41126794	41126794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TREM2	NM_018965	exon4	c.G493A	p.E165K	CTCCTTCCAAGAG	.	112.0	8.0	142.0	0.0	.	91
TRIM13	10206	ucsc.edu;mdanderson.org	37	13	50592279	50592279	+	RNA	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TRIM13	.	.	.	.	TAAGTTTAAACTT	.	95.0	69.0	284.0	0.0	.	228
TRIM54	57159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27528584	27528584	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TRIM54	NM_032546	exon6	c.G868C	p.G290R	GTCCGCGGCCTCA	.	79.0	33.0	100.0	0.0	.	227
TRMT44	152992	hgsc.bcm.edu;broad.mit.edu	37	4	8469838	8469838	+	Silent	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	.	NM_152544	exon9	c.C1692T	p.V564V	CAGGGTCGGGTGT	.	123.0	5.0	155.0	0.0	.	.
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41865515	41865515	+	Silent	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	TYRO3	NM_006293	exon17	c.G1995A	p.E665E	GGCAGAGGACATG	.	62.0	12.0	115.0	0.0	.	1388
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	79824389	79824389	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	VPS13A	NM_001018038	exon6	c.C436T	p.Q146X	GTTACACAGATCA	.	233.0	127.0	332.0	0.0	.	161
VWA5B1	127731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	20657389	20657389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	.	NM_001039500	exon11	c.C1485A	p.N495K	ACCCAACGTCTGC	.	145.0	81.0	204.0	0.0	.	.
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88206050	88206050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	WAPAL	NM_015045	exon16	c.G3271A	p.E1091K	TCTCTTCTGTACC	.	180.0	104.0	261.0	0.0	.	91
WIF1	11197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	65448938	65448938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	WIF1	NM_007191	exon9	c.C978G	p.C326W	ACATTGGCATTTG	.	95.0	24.0	149.0	0.0	.	1110
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168100239	168100239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	XIRP2	NM_152381	exon9	c.G2337T	p.L779F	GCCGTTGGACACA	.	230.0	114.0	305.0	0.0	.	104
ZBTB40	9923	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22816452	22816452	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ZBTB40	NM_001083621	exon3	c.C11G	p.P4R	AGCTCCCCAACTA	.	53.0	25.0	47.0	0.0	.	91
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77618337	77618337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ZFHX4	NM_024721	exon2	c.G2014A	p.G672S	CCGGGTGGCTCTT	.	52.0	8.0	96.0	0.0	.	98
ZNF229	7772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44934591	44934591	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ZNF229	NM_014518	exon6	c.G365C	p.C122S	ACTCTACAGTCTT	.	106.0	25.0	169.0	0.0	.	94
ZNF521	25925	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22806650	22806650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	ZNF521	NM_015461	exon4	c.A1232G	p.N411S	TGTTTGTTGCAGT	.	197.0	112.0	275.0	2.0	.	275
HGF	3082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	81339555	81339556	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-BC-A217-01A-11D-A152-10	TCGA-BC-A217-10A-01D-A152-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2bff30d5-be79-4686-8164-7a7d9619d3c0	b12f2a60-b900-4c83-9b9e-d1f6bbd469f9	.	.	.	.	.	p.P483Q	TATTACGGGATCT	.	126.0	58.0	197.0	0.0	.	.