Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA8	10351	hgsc.bcm.edu;bcgsc.ca	37	17	66879991	66879991	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ABCA8	NM_007168	exon27	c.T3528C	p.T1176T	TCGAAGAGTAAAA	.	111.0	5.0	104.0	0.0	.	93
ABHD12	26090	hgsc.bcm.edu;bcgsc.ca	37	20	25300910	25300910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ABHD12	NM_001042472	exon4	c.A467G	p.D156G	ATCTGGTCTTTGC	.	81.0	4.0	64.0	0.0	.	91
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64617541	64617541	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ADAMTS9	NM_182920	exon15	c.G2236C	p.G746R	CGCCACCACAAAC	.	122.0	46.0	104.0	0.0	.	230
ALS2CR8	79800	hgsc.bcm.edu;bcgsc.ca	37	2	203834662	203834662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ALS2CR8	NM_024744	exon11	c.A974G	p.Q325R	AGGTACAGAAGTT	.	72.0	4.0	112.0	0.0	.	136
ANKRD12	23253	hgsc.bcm.edu;bcgsc.ca	37	18	9255794	9255794	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ANKRD12	NM_015208	exon9	c.A2529G	p.K843K	TGAAAAAGAAAAG	.	86.0	4.0	66.0	0.0	.	92
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu	37	10	27349321	27349321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ANKRD26	NM_014915	exon15	c.T1517C	p.V506A	TTTGGAACAGAAT	.	124.0	5.0	88.0	0.0	.	138
ANKRD34C	390616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	79587136	79587136	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_001146341	exon2	c.A1510T	p.R504X	CCAAAGAGAGTTG	.	60.0	36.0	52.0	0.0	.	.
AP2A2	161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	992671	992671	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	AP2A2	NM_001242837	exon11	c.A1441T	p.K481X	GCGGCCAAGACTG	.	155.0	65.0	118.0	0.0	.	90
AP3B1	8546	hgsc.bcm.edu;bcgsc.ca	37	5	77471657	77471657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	AP3B1	NM_003664	exon10	c.T1046C	p.V349A	TACTGCACCTCCC	.	85.0	4.0	60.0	0.0	.	90
AQR	9716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35222481	35222481	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	AQR	NM_014691	exon12	c.A992T	p.Y331F	CTATCATAGTGAA	.	35.0	10.0	27.0	0.0	.	135
ARID1B	57492	hgsc.bcm.edu;bcgsc.ca	37	6	157256613	157256613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ARID1B	NM_020732	exon5	c.A1940G	p.E647G	CTCAGGAAGGCTA	.	73.0	4.0	99.0	0.0	.	154
ARID2	196528	hgsc.bcm.edu;bcgsc.ca	37	12	46231166	46231166	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ARID2	NM_152641	exon9	c.T1086C	p.C362C	AAAATGTCTAATG	.	84.0	4.0	73.0	0.0	.	100
ATP7B	540	hgsc.bcm.edu;bcgsc.ca	37	13	52532539	52532539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ATP7B	NM_000053	exon8	c.A2263G	p.K755E	CCGCCTTCTCAGC	.	88.0	5.0	99.0	0.0	.	92
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	76856034	76856034	+	Splice_Site	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ATRX	NM_000489	exon24	c.5567-1G>A	.	CCACACCTGATCA	.	104.0	47.0	92.0	0.0	.	248
BAZ1A	11177	hgsc.bcm.edu;bcgsc.ca	37	14	35272095	35272095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	BAZ1A	NM_182648	exon7	c.A826G	p.R276G	TCCCTCTTCGTCT	.	68.0	4.0	39.0	0.0	.	291
BDH2	56898	hgsc.bcm.edu;bcgsc.ca	37	4	104013835	104013835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	BDH2	NM_020139	exon4	c.T170C	p.L57P	ACATCAAGGACAC	.	135.0	6.0	199.0	0.0	.	90
BIN2	51411	hgsc.bcm.edu;bcgsc.ca	37	12	51693495	51693495	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	BIN2	NM_016293	exon6	c.A412G	p.R138G	CAATTCTCTCCTG	.	71.0	4.0	39.0	0.0	.	91
C14orf166B	145497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	77292857	77292857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_194287	exon1	c.T19C	p.S7P	TTCCCATCAAAGC	.	73.0	5.0	83.0	0.0	.	.
C16orf13	84326	ucsc.edu;bcgsc.ca	37	16	684744	684744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	C16orf13	NM_032366	exon5	c.C542T	p.A181V	CCACTGGCCTTTC	.	38.0	4.0	62.0	0.0	.	22
C9orf85	138241	hgsc.bcm.edu;bcgsc.ca	37	9	74561974	74561974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	C9orf85	NM_182505	exon2	c.T155C	p.L52P	AAGTTCTTGAGTG	.	81.0	4.0	61.0	0.0	.	90
CAB39L	81617	hgsc.bcm.edu;bcgsc.ca	37	13	49913821	49913821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CAB39L	NM_030925	exon7	c.T682C	p.S228P	TTAAAGACTGTCT	.	92.0	4.0	126.0	0.0	.	90
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62385129	62385129	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CADPS	NM_003716	exon30	c.G4014A	p.Q1338Q	GATGCCCTGCAGT	.	119.0	45.0	132.0	0.0	.	281
CATSPERD	257062	hgsc.bcm.edu;bcgsc.ca	37	19	5737210	5737210	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_152784	exon6	c.T453C	p.F151F	TTTGTTTTGTGTG	.	60.0	4.0	77.0	0.0	.	.
CCDC122	160857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	44433973	44433973	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CCDC122	NM_144974	exon5	c.A390G	p.A130A	TATTTTTGCATAA	.	49.0	35.0	63.0	0.0	.	90
CCDC158	339965	hgsc.bcm.edu;bcgsc.ca	37	4	77247091	77247091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CCDC158	NM_001042784	exon22	c.A3076G	p.T1026A	AACTAGTTAGGAG	.	80.0	4.0	60.0	0.0	.	96
CCDC3	83643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13040436	13040436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CCDC3	NM_031455	exon2	c.A451G	p.R151G	TCCTTCTGTTCTC	.	94.0	26.0	83.0	0.0	.	91
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36169807	36169807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CCIN	NM_005893	exon1	c.A308T	p.E103V	TGGAGGAGCTGCT	.	126.0	46.0	104.0	0.0	.	92
CCNF	899	hgsc.bcm.edu;bcgsc.ca	37	16	2487180	2487180	+	Missense_Mutation	SNP	C	C	T	rs138913390		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CCNF	NM_001761	exon5	c.C397T	p.R133C	GCCTCTCGCTTCT	.	58.0	4.0	47.0	0.0	C|1.000;T|0.000	658
CDC23	8697	hgsc.bcm.edu;bcgsc.ca	37	5	137537070	137537070	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CDC23	NM_004661	exon5	c.A483G	p.K161K	TTGGTGTTTTTTG	.	72.0	4.0	75.0	0.0	.	226
CDHR4	389118	hgsc.bcm.edu;bcgsc.ca	37	3	49832387	49832387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_001007540	exon9	c.T1178C	p.V393A	TCAAGGACTCTGT	.	73.0	5.0	60.0	0.0	.	.
CHKA	1119	hgsc.bcm.edu;bcgsc.ca	37	11	67821492	67821492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CHKA	NM_001277	exon12	c.A1337G	p.D446G	TAGGCATCAAACC	.	82.0	4.0	69.0	0.0	.	91
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	38725216	38725216	+	Silent	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CLEC14A	NM_175060	exon1	c.G12T	p.A4A	GGCGAACGCCGGC	.	85.0	46.0	38.0	0.0	.	94
CNST	163882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	246754974	246754974	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	CNST	NM_152609	exon2	c.A110T	p.D37V	CATCAGATGAAAA	.	143.0	45.0	119.0	0.0	.	90
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103481268	103481268	+	Missense_Mutation	SNP	C	C	A	rs150428394	alternate_allele	TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	COL11A1	NM_080629	exon12	c.G1480T	p.A494S	CATCAGCCCCTGG	.	129.0	45.0	134.0	0.0	C|1.000;T|0.000	586
COL5A3	50509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10112330	10112330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	COL5A3	NM_015719	exon8	c.A980G	p.D327G	CCACTGTCAGGGT	.	99.0	39.0	71.0	0.0	.	99
DAB1	1600	hgsc.bcm.edu;bcgsc.ca	37	1	57480890	57480890	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	DAB1	NM_021080	exon14	c.A1110G	p.Q370Q	AACAGTTTGTGTG	.	64.0	5.0	41.0	0.0	.	93
DAPK2	23604	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	64275877	64275877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	DAPK2	NM_014326	exon3	c.C169T	p.R57W	TCTGCCGCTTCTT	.	108.0	20.0	39.0	0.0	.	333
DERL1	79139	hgsc.bcm.edu;bcgsc.ca	37	8	124037286	124037286	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	DERL1	NM_001134671	exon3	c.T270C	p.A90A	ATCAAAAGCTCCT	.	61.0	4.0	37.0	0.0	.	226
DHX37	57647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125451369	125451369	+	Silent	SNP	T	T	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	DHX37	NM_032656	exon12	c.A1560T	p.S520S	GGCCCTTGACTTC	.	168.0	69.0	155.0	0.0	.	227
DYNC2LI1	51626	hgsc.bcm.edu;bcgsc.ca	37	2	44032355	44032355	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	DYNC2LI1	NM_001193464	exon12	c.A966G	p.E322E	AAATGAAGTCGAT	.	119.0	6.0	99.0	0.0	.	91
EDC4	23644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67916365	67916365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	EDC4	NM_014329	exon25	c.G3310A	p.D1104N	GCTGCAGACACAT	.	89.0	33.0	70.0	0.0	.	92
EIF2AK3	9451	hgsc.bcm.edu;bcgsc.ca	37	2	88879055	88879055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	EIF2AK3	NM_004836	exon11	c.A1867G	p.R623G	GGATCCTCTTGAT	.	90.0	5.0	107.0	0.0	.	361
EMCN	51705	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	101396223	101396223	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	EMCN	NM_001159694	exon3	c.A231G	p.T77T	AGTAGCTGTTGAC	.	38.0	4.0	56.0	0.0	.	90
EPHX1	2052	hgsc.bcm.edu;bcgsc.ca	37	1	226016567	226016567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	EPHX1	NM_001136018	exon2	c.A137G	p.D46G	AGGACGACAGCAT	.	99.0	5.0	84.0	0.0	.	281
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	144944633	144944633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	EPPK1	NM_031308	exon1	c.G2789A	p.G930E	ACAGCTCCCAGGC	.	35.0	12.0	14.0	0.0	.	25
ERCC4	2072	hgsc.bcm.edu;bcgsc.ca	37	16	14024746	14024746	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ERCC4	NM_005236	exon5	c.A972G	p.S324S	GAATTCAGGTGGG	.	54.0	4.0	66.0	0.0	.	665
FAM160B1	57700	hgsc.bcm.edu;bcgsc.ca	37	10	116605202	116605202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	FAM160B1	NM_020940	exon8	c.T1090C	p.F364L	TCCTGGTTTGATT	.	80.0	4.0	78.0	0.0	.	91
FAM188B	84182	hgsc.bcm.edu;bcgsc.ca	37	7	30821784	30821784	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	FAM188B	NM_032222	exon3	c.A375G	p.E125E	AGATGAAGATGCA	.	77.0	4.0	49.0	0.0	.	90
FAM98A	25940	hgsc.bcm.edu;bcgsc.ca	37	2	33811687	33811687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	FAM98A	NM_015475	exon6	c.T662C	p.L221P	ATTAGCAGCTTTC	.	87.0	4.0	84.0	0.0	.	91
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45623916	45623916	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	FANCM	NM_020937	exon7	c.A1200G	p.K400K	GTCAAAAAATGAA	.	75.0	23.0	68.0	0.0	.	569
FN1	2335	hgsc.bcm.edu;bcgsc.ca	37	2	216264012	216264012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	FN1	NM_212476	exon21	c.A3316G	p.T1106A	TCCATGTGATCAC	.	84.0	4.0	78.0	0.0	.	584
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	40342899	40342899	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	GHDC	NM_001142623	exon7	c.C1105T	p.R369X	CCACTCGCACCAC	.	55.0	25.0	59.0	0.0	.	90
GLI2	2736	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121748010	121748010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	GLI2	NM_005270	exon13	c.C4520A	p.A1507D	TGGAGGCCCCCCA	.	82.0	53.0	133.0	1.0	.	954
GPR119	139760	hgsc.bcm.edu;bcgsc.ca	37	X	129518585	129518585	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	GPR119	NM_178471	exon1	c.T837C	p.Y279Y	ATAGGCATAGATG	.	95.0	6.0	133.0	0.0	.	132
GRIK3	2899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	37282833	37282833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	GRIK3	NM_000831	exon13	c.G1919T	p.G640V	CAGATGCCACCAA	.	188.0	72.0	127.0	0.0	.	158
GSTP1	2950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67352159	67352159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	GSTP1	NM_000852	exon4	c.T148C	p.Y50H	CAGCTATACGGGC	.	116.0	48.0	92.0	0.0	.	91
GUCY2C	2984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14840921	14840921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	GUCY2C	NM_004963	exon2	c.C294A	p.S98R	ACAGGTGCTACTC	.	34.0	25.0	53.0	0.0	.	338
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	45303811	45303811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HCN1	NM_021072	exon6	c.T1508C	p.I503T	TCTCGTATGATAT	.	131.0	55.0	114.0	0.0	.	91
HGF	3082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	81358964	81358964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HGF	NM_000601	exon8	c.T997C	p.Y333H	GAGGATACTGAGA	.	83.0	5.0	60.0	0.0	.	516
HIPK1	204851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114500750	114500750	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HIPK1	NM_198268	exon8	c.T1818C	p.D606D	TTCAGATGTCTCA	.	136.0	50.0	112.0	0.0	.	361
HIPK3	10114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33308924	33308924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HIPK3	NM_001048200	exon2	c.G964T	p.D322Y	CATGCTGATCTCA	.	98.0	43.0	113.0	1.0	.	336
HMGCR	3156	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74645959	74645959	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HMGCR	NM_001130996	exon7	c.T649G	p.S217A	TGTGTGTCCTTGG	.	200.0	72.0	156.0	1.0	.	227
HMX2	3167	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	124909334	124909334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HMX2	NM_005519	exon2	c.T517C	p.Y173H	AAGCGCTACCTGA	.	82.0	37.0	66.0	0.0	.	90
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31778417	31778417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HSPA1L	NM_005527	exon2	c.T1333C	p.Y445H	CCTCATACACCTG	.	365.0	118.0	239.0	0.0	.	230
HSPB2	3316	broad.mit.edu;bcgsc.ca	37	11	111784335	111784335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	HSPB2	NM_001541	exon2	c.A265G	p.T89A	GAGGTGACTGTGA	.	51.0	4.0	79.0	0.0	.	659
IARS2	55699	hgsc.bcm.edu;bcgsc.ca	37	1	220276069	220276069	+	Silent	SNP	A	A	G	rs112842443		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	IARS2	NM_018060	exon7	c.A900G	p.Q300Q	CACACAACCTTGG	.	76.0	4.0	65.0	0.0	A|0.500;G|0.500	94
IL12A	3592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	159711260	159711260	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	IL12A	NM_000882	exon4	c.G401C	p.R134T	ATTCCAGAGAGAC	.	112.0	45.0	115.0	0.0	.	90
IL34	146433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70688456	70688456	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	IL34	NM_152456	exon3	c.T44A	p.L15H	TCTTCCTTGGCGT	.	190.0	68.0	165.0	0.0	.	91
INCENP	3619	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	61906200	61906200	+	Silent	SNP	A	A	G	rs150865728		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	INCENP	NM_001040694	exon6	c.A1131G	p.E377E	GAAGGAACCCCCC	.	40.0	4.0	34.0	0.0	A|1.000;G|0.000	227
ING3	54556	hgsc.bcm.edu;bcgsc.ca	37	7	120607623	120607623	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ING3	NM_019071	exon7	c.T477C	p.D159D	AACAGATCATATT	.	87.0	4.0	54.0	0.0	.	515
INPP5A	3632	hgsc.bcm.edu;bcgsc.ca	37	10	134523851	134523851	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	INPP5A	NM_005539	exon8	c.538delT	p.L180fs	TTTGACTTGGTGA	.	137.0	55.0	101.0	0.0	.	229
ITGAL	3683	hgsc.bcm.edu;bcgsc.ca	37	16	30507878	30507878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ITGAL	NM_002209	exon15	c.T1823C	p.I608T	AGATGATCGTGCT	.	119.0	6.0	81.0	0.0	.	994
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73849087	73849087	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KCNB2	NM_004770	exon3	c.G1497A	p.L499L	GGCTCTGTCGGAA	.	48.0	12.0	17.0	0.0	.	158
KCNK9	51305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	140631049	140631049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KCNK9	NM_016601	exon2	c.T577C	p.C193R	TGAAGCAGTAGTA	.	141.0	46.0	87.0	0.0	.	93
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196451495	196451495	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KCNT2	NM_198503	exon4	c.G290C	p.W97S	TTCACCCAAAAGA	.	52.0	19.0	59.0	0.0	.	159
KIAA1462	57608	hgsc.bcm.edu;ucsc.edu	37	10	30317392	30317392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KIAA1462	NM_020848	exon3	c.A1685G	p.Q562R	CCAGTTTGGAACT	.	40.0	4.0	24.0	0.0	.	72
KIF27	55582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86504072	86504072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KIF27	NM_017576	exon7	c.A1906G	p.K636E	GGACCTTATCTTG	.	172.0	63.0	136.0	1.0	.	523
KIF2A	3796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	61669513	61669513	+	Splice_Site	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KIF2A	NM_001098511	exon18	c.1761-1G>A	.	TTTATAGGGTCAA	.	85.0	40.0	63.0	0.0	.	228
KRTAP5-10	387273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71277087	71277087	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KRTAP5-10	NM_001012710	exon1	c.T454G	p.S152A	TGCTCCTCAGGCT	.	145.0	51.0	157.0	0.0	.	91
KSR2	283455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117922348	117922348	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	KSR2	NM_173598	exon16	c.G2236C	p.G746R	GGTAGCCCATGCC	.	123.0	62.0	80.0	1.0	.	1449
LANCL2	55915	hgsc.bcm.edu;bcgsc.ca	37	7	55466298	55466298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	LANCL2	NM_018697	exon3	c.T505C	p.C169R	AGTGACTGTGAGT	.	82.0	4.0	88.0	0.0	.	516
LCN2	3934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130911936	130911936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	LCN2	NM_005564	exon1	c.C132A	p.D44E	CCAGGACAACCAA	.	75.0	29.0	68.0	0.0	.	90
LDHA	3939	hgsc.bcm.edu;bcgsc.ca	37	11	18425285	18425285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	LDHA	NM_001165414	exon6	c.A724G	p.T242A	CTGAAGACTCTGC	.	68.0	5.0	64.0	0.0	.	650
LDOC1L	84247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44892949	44892949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	LDOC1L	NM_032287	exon2	c.G488A	p.R163H	TTGTTGCGCAAGG	.	98.0	36.0	78.0	0.0	.	69
LMCD1	29995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	8607167	8607167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	LMCD1	NM_014583	exon5	c.A773T	p.Y258F	TGGTCTACTCGGA	.	125.0	51.0	90.0	0.0	.	91
LRP2	4036	hgsc.bcm.edu;bcgsc.ca	37	2	170048456	170048456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	LRP2	NM_004525	exon48	c.A8918G	p.D2973G	TCGCCATCACAGA	.	69.0	4.0	78.0	0.0	.	175
LTN1	26046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	30329699	30329699	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	LTN1	NM_015565	exon15	c.G2985A	p.P995P	GTCGTTCGGCATT	.	68.0	4.0	64.0	0.0	.	530
METTL6	131965	hgsc.bcm.edu;bcgsc.ca	37	3	15467900	15467900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	METTL6	NM_152396	exon2	c.A119G	p.E40G	TGAGCCTCTTGTT	.	113.0	5.0	84.0	0.0	.	90
MGA	23269	hgsc.bcm.edu;bcgsc.ca	37	15	42003112	42003112	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	MGA	NM_001080541	exon8	c.T2649C	p.S883S	TACCTCTTATTCT	.	65.0	4.0	61.0	0.0	.	522
MOGAT1	116255	hgsc.bcm.edu;bcgsc.ca	37	2	223559205	223559205	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	MOGAT1	NM_058165	exon4	c.T603C	p.T201T	GTTCACTCTGTTC	.	57.0	4.0	93.0	0.0	.	67
MROH1	727957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145255353	145255353	+	Silent	SNP	A	A	G	rs144186714	by1000genomes	TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_001099280	exon12	c.A1050G	p.L350L	CCGCCTACTGGCC	.	60.0	17.0	47.0	0.0	A|0.999;G|0.001	.
MTX1	4580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155180142	155180142	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	MTX1	NM_198883	exon2	c.T534C	p.Y178Y	GACCTATGCCAGA	.	119.0	51.0	106.0	0.0	.	91
MYH7B	57644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33575459	33575459	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	MYH7B	NM_020884	exon17	c.A1373T	p.K458M	TGACCAAGGGCCA	.	141.0	32.0	70.0	0.0	.	136
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	26442791	26442791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	MYO3A	NM_017433	exon24	c.A2648T	p.H883L	TGCCACATTCTAA	.	142.0	6.0	140.0	0.0	.	1007
NEFL	4747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	24811079	24811079	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	NEFL	NM_006158	exon3	c.A1400T	p.K467M	TCATCCTTGGCTT	.	30.0	24.0	52.0	0.0	.	24
NFKB1	4790	hgsc.bcm.edu;bcgsc.ca	37	4	103531782	103531782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	NFKB1	NM_003998	exon20	c.T2278C	p.S760P	GATGACTCTTGGG	.	46.0	4.0	77.0	0.0	.	912
NMI	9111	hgsc.bcm.edu;bcgsc.ca	37	2	152127280	152127280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	NMI	NM_004688	exon8	c.A851G	p.K284R	CCATTCTTTGCCC	.	94.0	4.0	102.0	0.0	.	90
NMI	9111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152128184	152128184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	NMI	NM_004688	exon7	c.G697T	p.V233F	CAGTAACTCTATG	.	22.0	14.0	60.0	0.0	.	90
NRBP1	29959	hgsc.bcm.edu;bcgsc.ca	37	2	27656637	27656637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	NRBP1	NM_013392	exon3	c.A308G	p.E103G	TCTCTGAACGCAA	.	81.0	4.0	74.0	0.0	.	334
NSFL1C	55968	hgsc.bcm.edu;bcgsc.ca	37	20	1434946	1434946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	NSFL1C	NM_016143	exon5	c.T449C	p.F150S	CCTGCAAATGGCT	.	79.0	5.0	56.0	0.0	.	90
OTOGL	283310	hgsc.bcm.edu;bcgsc.ca	37	12	80747200	80747200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_173591	exon45	c.T5476C	p.C1826R	ACTTCCTGTTTGA	.	131.0	6.0	89.0	0.0	.	.
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80714407	80714407	+	Silent	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_173591	exon33	c.A3981T	p.T1327T	ATTCACAGATTCT	.	86.0	52.0	68.0	0.0	.	.
PCDH9	5101	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	66879031	66879031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PCDH9	NM_203487	exon5	c.C3470T	p.P1157L	GAGAGAGGAGATT	.	86.0	51.0	97.0	1.0	.	96
PCDHGA11	56105	hgsc.bcm.edu;bcgsc.ca	37	5	140803211	140803211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_032091	exon1	c.A2417G	p.D806G	AATGTGACCCGAC	.	84.0	5.0	98.0	0.0	.	.
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	82872485	82872485	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PCF11	NM_015885	exon2	c.G309A	p.V103V	TTGTGTGTTTGAA	.	87.0	5.0	66.0	0.0	.	23
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47783761	47783761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PCNT	NM_006031	exon14	c.C2521T	p.R841W	TGTGGGCGGGAGC	.	82.0	41.0	74.0	0.0	.	141
PDE4C	5143	hgsc.bcm.edu;bcgsc.ca	37	19	18333125	18333125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PDE4C	NM_000923	exon3	c.T251C	p.L84P	TTTTCCAGGTCAA	.	66.0	4.0	38.0	0.0	.	94
PHLPP1	23239	hgsc.bcm.edu;bcgsc.ca	37	18	60563017	60563017	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_194449	exon6	c.A2217G	p.L739L	TAGCTTACAGACA	.	56.0	4.0	63.0	0.0	.	.
PKD1L1	168507	hgsc.bcm.edu;bcgsc.ca	37	7	47873952	47873952	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PKD1L1	NM_138295	exon40	c.A6159G	p.A2053A	CTCCTGTGCGTCT	.	73.0	4.0	77.0	0.0	.	145
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110457871	110457871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PKHD1L1	NM_177531	exon38	c.A5773G	p.R1925G	CCAAGCAGAGGTA	.	84.0	30.0	52.0	0.0	.	145
PKN2	5586	hgsc.bcm.edu;bcgsc.ca	37	1	89299097	89299097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PKN2	NM_006256	exon22	c.T2921C	p.F974S	AAATGTTCAGAGA	.	70.0	4.0	69.0	0.0	.	522
PLA2R1	22925	hgsc.bcm.edu;bcgsc.ca	37	2	160879270	160879270	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PLA2R1	NM_001195641	exon7	c.T1200C	p.H400H	AGCCTCATGCCAG	.	81.0	4.0	133.0	0.0	.	93
PLAA	9373	hgsc.bcm.edu;bcgsc.ca	37	9	26905635	26905635	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PLAA	NM_001031689	exon14	c.T2262C	p.S754S	ATCATCACTGATA	.	76.0	4.0	103.0	0.0	.	514
PLCB2	5330	hgsc.bcm.edu;bcgsc.ca	37	15	40584596	40584596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PLCB2	NM_004573	exon22	c.T2375C	p.M792T	GCAGGCATGGTGA	.	80.0	4.0	64.0	0.0	.	275
PLD1	5337	hgsc.bcm.edu;bcgsc.ca	37	3	171406587	171406587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PLD1	NM_002662	exon14	c.C1418T	p.S473L	GCCACCGATTGGT	.	98.0	4.0	83.0	0.0	.	660
PPP2R3C	55012	hgsc.bcm.edu;bcgsc.ca	37	14	35585916	35585916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PPP2R3C	NM_017917	exon2	c.A86G	p.D29G	TCTTCATCTTTTA	.	55.0	4.0	39.0	0.0	.	227
PROL1	58503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71275489	71275489	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PROL1	NM_021225	exon3	c.C444T	p.T148T	CACCACCGCAGAT	.	134.0	91.0	174.0	0.0	.	135
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50100971	50100971	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PRR12	NM_020719	exon4	c.A3379T	p.S1127C	GTCTCCAGCTGCC	.	109.0	43.0	58.0	0.0	.	70
PSD4	23550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113950141	113950141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PSD4	NM_012455	exon6	c.G1813A	p.E605K	AAGTCTGAAGTGG	.	33.0	20.0	47.0	0.0	.	229
PSMC4	5704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40486011	40486011	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PSMC4	NM_006503	exon8	c.G876A	p.L292L	GGAGCTGCTGAAT	.	259.0	108.0	224.0	0.0	.	91
PSMG2	56984	hgsc.bcm.edu;bcgsc.ca	37	18	12718587	12718587	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PSMG2	NM_020232	exon4	c.T360C	p.V120V	CATTGTTCTTTCA	.	84.0	4.0	75.0	0.0	.	68
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3007357	3007357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	PTPRA	NM_002836	exon22	c.A1639T	p.N547Y	ATCCAGAATGACA	.	107.0	49.0	68.0	0.0	.	227
RASA1	5921	hgsc.bcm.edu;bcgsc.ca	37	5	86682657	86682657	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RASA1	NM_002890	exon23	c.A2862G	p.E954E	CATGGAAGGTGTC	.	62.0	4.0	66.0	0.0	.	661
RAVER2	55225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65255125	65255125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RAVER2	NM_018211	exon5	c.A1033G	p.K345E	ATTATGAAAAGTT	.	80.0	27.0	82.0	0.0	.	135
RCBTB2	1102	hgsc.bcm.edu;bcgsc.ca	37	13	49073817	49073817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RCBTB2	NM_001268	exon13	c.C1324T	p.R442W	AGGCCCGGTAAAC	.	67.0	5.0	81.0	0.0	.	418
RFC1	5981	hgsc.bcm.edu;bcgsc.ca	37	4	39352986	39352986	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RFC1	NM_002913	exon2	c.A114G	p.K38K	TATTCCTTTCTTT	.	70.0	4.0	73.0	0.0	.	230
RGS7	6000	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	241262022	241262022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RGS7	NM_002924	exon3	c.G119A	p.G40E	GGAATTCCATTTT	.	41.0	18.0	44.0	1.0	.	232
RIPK2	8767	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	90801575	90801575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RIPK2	NM_003821	exon10	c.A1150G	p.K384E	TTTATGAAGCTGC	.	107.0	32.0	73.0	1.0	.	523
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73814206	73814206	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RLIM	NM_183353	exon4	c.A188T	p.E63V	AGCAACTCTTCCT	.	108.0	34.0	94.0	0.0	.	228
RMDN2	151393	hgsc.bcm.edu;bcgsc.ca	37	2	38218373	38218373	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	NM_144713	exon7	c.A1412G	p.D471G	ATCTAGATATAGC	.	64.0	4.0	47.0	0.0	.	.
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78336932	78336932	+	Missense_Mutation	SNP	A	A	G	rs144458310	byfrequency	TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RNF213	NM_001256071	exon40	c.A11386G	p.R3796G	TGCACTAGGAAAC	.	74.0	23.0	63.0	0.0	A|1.000;G|0.000	577
RPP14	11102	hgsc.bcm.edu;bcgsc.ca	37	3	58302307	58302307	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RPP14	NM_007042	exon4	c.A228G	p.R76R	CTTGAGAATATGT	.	103.0	5.0	83.0	0.0	.	90
RTN4	57142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55254181	55254181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RTN4	NM_020532	exon3	c.A1054G	p.K352E	CCAATTTAGTAAG	.	66.0	30.0	84.0	0.0	.	155
RYR3	6263	hgsc.bcm.edu;bcgsc.ca	37	15	33993260	33993260	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	RYR3	NM_001243996	exon42	c.A6462G	p.L2154L	GAGCTTAGAGGAA	.	72.0	4.0	60.0	0.0	.	520
SARDH	1757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136578161	136578161	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SARDH	NM_007101	exon9	c.A1236G	p.A412A	CTCACCTGCGCTG	.	41.0	15.0	26.0	0.0	.	90
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167297978	167297978	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SCN7A	NM_002976	exon14	c.C2085T	p.D695D	CATACAGTCCCAC	.	82.0	57.0	146.0	0.0	.	67
SERPINB12	89777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61232745	61232745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SERPINB12	NM_080474	exon6	c.T713C	p.V238A	AGGAGGTGAAGGC	.	62.0	6.0	53.0	0.0	.	227
SI	6476	hgsc.bcm.edu;bcgsc.ca	37	3	164764772	164764772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SI	NM_001041	exon16	c.A1744G	p.R582G	AGCTTCTCTTATT	.	142.0	6.0	126.0	0.0	.	104
SIGLEC5	8778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52130941	52130941	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SIGLEC5	NM_003830	exon6	c.A1056G	p.R352R	GGAGCATCTGCAG	.	34.0	13.0	29.0	0.0	.	92
SLC35A5	55032	hgsc.bcm.edu;bcgsc.ca	37	3	112299917	112299917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SLC35A5	NM_017945	exon6	c.T953C	p.L318P	AGGGCCTTTCAGT	.	90.0	4.0	69.0	0.0	.	91
SLC9A9	285195	hgsc.bcm.edu;bcgsc.ca	37	3	143550901	143550901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SLC9A9	NM_173653	exon2	c.A338G	p.H113R	ATGTTGTGCTGAC	.	68.0	4.0	46.0	0.0	.	229
SLCO1A2	6579	hgsc.bcm.edu;bcgsc.ca	37	12	21450445	21450445	+	Missense_Mutation	SNP	A	A	G	rs11568579	byfrequency	TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SLCO1A2	NM_134431	exon10	c.T968C	p.L323P	CTTACAAGTATGA	.	29.0	4.0	53.0	0.0	A|1.000;G|0.000	157
SLFN12L	100506736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33807038	33807038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SLFN12L	NM_001195790	exon2	c.G191T	p.R64L	ACAGCTCGTGAGA	.	163.0	71.0	144.0	0.0	.	23
SLITRK6	84189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	86369191	86369191	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SLITRK6	NM_032229	exon2	c.1453delA	p.T485fs	CCTTAGTTAGAGG	.	64.0	53.0	60.0	0.0	.	137
SMC3	9126	hgsc.bcm.edu;bcgsc.ca	37	10	112338437	112338437	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SMC3	NM_005445	exon7	c.T402C	p.N134N	AAGCAATCCTTAT	.	55.0	4.0	51.0	0.0	.	92
SMTN	6525	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31485773	31485773	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SMTN	NM_001207018	exon6	c.T728G	p.V243G	CCACAGTGACACT	.	91.0	31.0	64.0	1.0	.	154
SNRK	54861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43388906	43388906	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SNRK	NM_017719	exon7	c.G1155A	p.A385A	CCACGCGACTGTC	.	47.0	19.0	22.0	0.0	.	815
SOX9	6662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	70120374	70120374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SOX9	NM_000346	exon3	c.G1376T	p.G459V	GCCAGGGCACCGG	.	77.0	33.0	67.0	0.0	.	514
SRRD	402055	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	26887637	26887637	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SRRD	NM_001013694	exon7	c.G1019A	p.X340X	CTGACTGAACTCG	.	15.0	11.0	13.0	0.0	.	22
SRRM2	23524	ucsc.edu;bcgsc.ca	37	16	2811772	2811772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	SRRM2	NM_016333	exon11	c.T1243C	p.S415P	CCCCAGTCTTCTT	.	41.0	6.0	74.0	0.0	.	93
STAG1	10274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	136085882	136085882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	STAG1	NM_005862	exon25	c.A2588G	p.H863R	CTTTTATGTAAGG	.	149.0	61.0	121.0	0.0	.	228
STAT3	6774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40500452	40500452	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	STAT3	NM_003150	exon2	c.T83A	p.M28K	AGCTCCATTGGGA	.	110.0	50.0	106.0	0.0	.	1271
STT3A	3703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125474114	125474114	+	Silent	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	STT3A	NM_152713	exon6	c.A480T	p.R160R	CTCCCGATCTGTG	.	92.0	68.0	144.0	1.0	.	90
TBP	6908	broad.mit.edu;mdanderson.org	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	61.0	10.0	67.0	1.0	.	91
TBPL1	9519	hgsc.bcm.edu;broad.mit.edu	37	6	134305776	134305776	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TBPL1	NM_004865	exon6	c.C448T	p.Q150X	ACATTACAGATTT	.	84.0	4.0	159.0	0.0	.	90
TCTN2	79867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124158356	124158356	+	Silent	SNP	A	A	T	rs111689585	alternate_allele	TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TCTN2	NM_024809	exon4	c.A462T	p.S154S	TGCCTCAGGCAAG	.	216.0	118.0	143.0	0.0	A|0.500;G|0.500	91
TECPR1	25851	hgsc.bcm.edu;bcgsc.ca	37	7	97873966	97873966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TECPR1	NM_015395	exon5	c.A448G	p.K150E	TGTCTTTCGTGTA	.	75.0	4.0	56.0	0.0	.	91
TM7SF3	51768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	27128524	27128524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TM7SF3	NM_016551	exon11	c.C1355T	p.S452F	CTTGTGGACCAGT	.	101.0	73.0	127.0	0.0	.	92
TMEM130	222865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98460878	98460878	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TMEM130	NM_152913	exon2	c.C231A	p.T77T	CAGCGGGGTGTGG	.	94.0	39.0	74.0	0.0	.	91
TMEM150B	284417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55832397	55832397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TMEM150B	NM_001085488	exon3	c.G8T	p.G3V	AGGTAGCCCCACA	.	163.0	78.0	126.0	0.0	.	68
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5355649	5355649	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TNRC18	NM_001080495	exon25	c.G6800C	p.G2267A	GTGTCTCCGTCGT	.	66.0	27.0	65.0	0.0	.	46
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25670532	25670532	+	Silent	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TOP2B	NM_001068	exon14	c.T1779A	p.I593I	CTTTACAATAGGA	.	46.0	23.0	40.0	0.0	.	273
TREML2	79865	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41162310	41162310	+	Missense_Mutation	SNP	G	G	A	rs147159415		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TREML2	NM_024807	exon3	c.C638T	p.A213V	GGAGACGCGGTCA	.	225.0	59.0	128.0	2.0	G|1.000;A|0.000	91
TRERF1	55809	broad.mit.edu;bcgsc.ca	37	6	42227244	42227244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TRERF1	NM_033502	exon9	c.C2102A	p.P701H	TGGGTGGGGTCCA	.	158.0	59.0	60.0	1.0	.	230
TRERF1	55809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	42227243	42227243	+	Silent	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TRERF1	NM_033502	exon9	c.C2103A	p.P701P	GTGGGTGGGGTCC	.	158.0	60.0	61.0	0.0	.	230
TRIM28	10155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	59061183	59061183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TRIM28	NM_005762	exon14	c.G2062T	p.D688Y	GGTGCAGACAGCA	.	39.0	33.0	75.0	0.0	.	870
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31355371	31355371	+	Silent	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TRPM1	NM_001252020	exon7	c.A966G	p.G322G	GGCACGTCCGCTG	.	94.0	36.0	61.0	0.0	.	94
TRPS1	7227	hgsc.bcm.edu;bcgsc.ca	37	8	116430680	116430680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TRPS1	NM_014112	exon6	c.A2701G	p.R901G	TACGCCTCTGAAA	.	114.0	5.0	104.0	0.0	.	229
TSC2	7249	broad.mit.edu;bcgsc.ca	37	16	2136835	2136854	+	Frame_Shift_Del	DEL	ATGACTCCGGTGAGGACTTC	ATGACTCCGGTGAGGACTTC	-	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	ATGACTCCGGTGAGGACTTC	ATGACTCCGGTGAGGACTTC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	TSC2_ENST00000219476,NS,carcinoid-endocrine_tumour,0	TSC2	NM_000548	exon38	c.4952_4971del	p.1651_1657del	TCTACAATGACTC	.	24.0	8.0	65.0	0.0	.	1908
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179577610	179577610	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	TTN	NM_001267550	exon94	c.T27142A	p.F9048I	CACTGAAAGGAGG	.	95.0	35.0	78.0	0.0	.	636
UBE2L3	7332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	21922044	21922044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	UBE2L3	NM_003347	exon1	c.G11T	p.S4I	CGGCCAGCAGGAG	.	153.0	57.0	141.0	0.0	.	414
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103300480	103300480	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	UBR5	NM_015902	exon36	c.G4728A	p.E1576E	CACACCCTCCACC	.	141.0	35.0	75.0	0.0	.	761
USP25	29761	hgsc.bcm.edu;broad.mit.edu	37	21	17163836	17163836	+	Silent	SNP	C	C	T	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	USP25	NM_013396	exon5	c.C408T	p.S136S	AGCCAGCATAGCA	.	60.0	4.0	62.0	0.0	.	663
USP31	57478	hgsc.bcm.edu;bcgsc.ca	37	16	23117594	23117594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	USP31	NM_020718	exon4	c.A893G	p.Q298R	TTGCTCTGTTTCT	.	113.0	5.0	92.0	0.0	.	663
VPS8	23355	hgsc.bcm.edu;bcgsc.ca	37	3	184646287	184646287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	VPS8	NM_001009921	exon31	c.A2680G	p.S894G	GAAGAGAGTCGAC	.	92.0	4.0	61.0	0.0	.	91
WDHD1	11169	hgsc.bcm.edu;bcgsc.ca	37	14	55408356	55408356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	WDHD1	NM_007086	exon26	c.A3242G	p.K1081R	CGCTTCTTTGCTT	.	82.0	4.0	138.0	0.0	.	91
WDR20	91833	hgsc.bcm.edu;bcgsc.ca	37	14	102676047	102676047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	WDR20	NM_001242417	exon4	c.T1633C	p.C545R	CCCCTGTGTCCTC	.	61.0	4.0	103.0	0.0	.	90
WDR90	197335	hgsc.bcm.edu;bcgsc.ca	37	16	699822	699822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	WDR90	NM_145294	exon2	c.T70C	p.S24P	AAGCGCTCCGCCA	.	37.0	4.0	33.0	0.0	.	92
WEE1	7465	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9597791	9597791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	WEE1	NM_003390	exon3	c.A797G	p.D266G	GTGAAGACATGGA	.	49.0	5.0	55.0	1.0	.	1404
WNT7A	7476	hgsc.bcm.edu;bcgsc.ca	37	3	13896149	13896149	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	WNT7A	NM_004625	exon3	c.T450C	p.G150G	GCAGCCACCCCAC	.	63.0	5.0	49.0	0.0	.	948
YTHDC2	64848	hgsc.bcm.edu;bcgsc.ca	37	5	112874844	112874844	+	Silent	SNP	A	A	G	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	YTHDC2	NM_022828	exon8	c.A1176G	p.K392K	AAACAAAGAAATG	.	63.0	4.0	55.0	0.0	.	92
YY2	404281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	21875262	21875262	+	Silent	SNP	T	T	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	YY2	NM_206923	exon1	c.T660A	p.P220P	ACTTCCTCCTGGG	.	110.0	46.0	87.0	0.0	.	193
ZDBF2	57683	hgsc.bcm.edu;bcgsc.ca	37	2	207174473	207174473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ZDBF2	NM_020923	exon5	c.T5221C	p.C1741R	GTGAGCTGTGAAC	.	72.0	4.0	91.0	0.0	.	3
ZIC1	7545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	147128660	147128660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ZIC1	NM_003412	exon1	c.C761A	p.T254K	TAGTTACGCACGT	.	181.0	69.0	103.0	0.0	.	91
ZNF639	51193	broad.mit.edu;bcgsc.ca	37	3	179051081	179051081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	ZNF639	NM_016331	exon7	c.G329A	p.C110Y	TAATTTGTGATGA	.	124.0	5.0	104.0	2.0	.	90
OR5L1	219437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55579735	55579736	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-BC-A3KF-01A-11D-A20W-10	TCGA-BC-A3KF-10A-01D-A20W-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df8ad51-b7d4-46a0-a522-f6c9a38067ff	90e68f39-b72a-45ea-85ff-92e633f5c29c	.	.	.	.	.	p.G265F	AGTTCAGGCAATA	.	82.0	34.0	59.0	1.0	.	.