Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq AADACL2 344752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 151475327 151475327 + Missense_Mutation SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . AADACL2 NM_207365 exon5 c.G1151A p.R384H ATTTACGTCTAGG . 148.0 16.0 144.0 0.0 . 90 ACACB 32 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 109629713 109629713 + Missense_Mutation SNP T T A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ACACB NM_001093 exon14 c.T2357A p.M786K ATGCGATGTTCAG . 187.0 35.0 242.0 0.0 . 98 ACPP 55 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 132075565 132075565 + Missense_Mutation SNP C C T rs148218296 byfrequency TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ACPP NM_001099 exon10 c.C1004T p.T335M ATGAGACGCAGCA . 104.0 38.0 156.0 1.0 C|0.999;T|0.001 91 ACRC 93953 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 70824088 70824088 + Missense_Mutation SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ACRC NM_052957 exon8 c.G961A p.D321N AGTGATGATTCGG . 134.0 93.0 144.0 1.0 . 93 ADAMDEC1 27299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 24256455 24256455 + Missense_Mutation SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ADAMDEC1 NM_014479 exon9 c.A831G p.I277M TAAGATAAAGGTG . 115.0 93.0 227.0 0.0 . 228 ADAMTSL1 92949 broad.mit.edu;bcgsc.ca 37 9 18777038 18777038 + Silent SNP C C G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ADAMTSL1 NM_001040272 exon19 c.C2811G p.L937L CCGCCTCAAGCCC . 5.0 3.0 78.0 0.0 . 230 ADPRH 141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 119306692 119306692 + Silent SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ADPRH NM_001125 exon5 c.C1041A p.L347L TTCTCTCGGGTCA . 62.0 32.0 53.0 0.0 . 91 ARHGAP40 343578 bcgsc.ca;mdanderson.org 37 20 37268001 37268001 + Missense_Mutation SNP G G C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ARHGAP40 NM_001164431 exon9 c.G1248C p.E416D GGCTGAGTACCTC . 69.0 10.0 162.0 0.0 . 68 ASB4 51666 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 95115314 95115314 + Missense_Mutation SNP T T C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ASB4 NM_016116 exon1 c.T31C p.S11P ACTAAATCTGGAG . 93.0 41.0 129.0 1.0 . 226 ATG10 83734 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 81548458 81548458 + Missense_Mutation SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ATG10 NM_001131028 exon7 c.G531T p.K177N ATTAAAGAATTCT . 102.0 21.0 128.0 0.0 . 90 ATP5C1 509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 7839122 7839122 + Missense_Mutation SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ATP5C1 NM_001001973 exon3 c.A204G p.I68M TCGAATATATGGA . 93.0 28.0 88.0 0.0 . 90 BIRC8 112401 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 53793408 53793408 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . BIRC8 NM_033341 exon1 c.G220A p.G74R CATGTCCCTTCTC . 145.0 59.0 187.0 0.0 . 227 BTBD9 114781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 38565731 38565731 + Missense_Mutation SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . BTBD9 NM_052893 exon3 c.T140C p.F47S GCAGGAAAACGTT . 198.0 25.0 221.0 0.0 . 226 C18orf8 29919 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 21089229 21089229 + Missense_Mutation SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . C18orf8 NM_013326 exon5 c.A394G p.I132V CAAGGAATCGAAT . 145.0 21.0 144.0 0.0 . 91 C1orf87 127795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 60505838 60505838 + Missense_Mutation SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . C1orf87 NM_152377 exon5 c.C498A p.S166R ACTTGGGCTCTGG . 87.0 44.0 56.0 0.0 . 154 C21orf128 150147 broad.mit.edu;bcgsc.ca;mdanderson.org 37 21 43523905 43523905 + RNA SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . . . . . . TCCATCGGTCACA . 146.0 13.0 318.0 0.0 . . C22orf29 79680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 19839038 19839038 + Silent SNP T T C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . C22orf29 NM_024627 exon3 c.A747G p.V249V TCTAGATACAGAG . 17.0 8.0 77.0 0.0 . 90 CA9 768 hgsc.bcm.edu;ucsc.edu 37 9 35674208 35674208 + Silent SNP T T C rs137897809 byfrequency TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 CA9,upper_leg,malignant_melanoma,0 CA9 NM_001216 exon1 c.T252C p.P84P TCTACCTGGAGAG . 85.0 12.0 133.0 0.0 T|0.985;C|0.015 95 CACHD1 57685 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 65139104 65139104 + Missense_Mutation SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CACHD1 NM_020925 exon19 c.A2531G p.D844G TCAGTGACAGAAC . 169.0 18.0 166.0 0.0 . 92 CACNA1I 8911 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 40030630 40030630 + Missense_Mutation SNP T T A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CACNA1I NM_001003406 exon5 c.T641A p.L214Q TCCTGCTGCTCTG . 121.0 52.0 215.0 1.0 . 135 CASS4 57091 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 55012476 55012476 + Missense_Mutation SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CASS4 NM_020356 exon2 c.A293G p.Y98C AGACCTATCAGGT . 11.0 5.0 104.0 0.0 . 25 CCDC141 285025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179718305 179718305 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CCDC141 NM_173648 exon20 c.G3107A p.G1036E TATTTTCCAACTC . 57.0 12.0 50.0 0.0 . 78 CDH9 1007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 26902658 26902658 + Nonsense_Mutation SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CDH9 NM_016279 exon7 c.G1180T p.E394X CATCTTCATCTAC . 83.0 45.0 73.0 0.0 . 99 CENPE 1062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 104065713 104065713 + Silent SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CENPE NM_001813 exon33 c.G4920A p.Q1640Q TTTCTCCTGAGTC . 37.0 21.0 40.0 0.0 . 277 CIT 11113 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 120222843 120222843 + Missense_Mutation SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CIT NM_001206999 exon11 c.C1322A p.P441H TTGGCAGGGGAGT . 107.0 5.0 149.0 0.0 . 399 CLTCL1 8218 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 22 19207465 19207465 + Nonsense_Mutation SNP T T A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CLTCL1 NM_001835 exon18 c.A2848T p.R950X CCTTTCTGCATAC . 106.0 37.0 150.0 0.0 . 230 COLGALT2 23127 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 183942845 183942845 + Missense_Mutation SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . . NM_015101 exon4 c.C532T p.L178F GATTGAGGGTCTG . 79.0 7.0 69.0 0.0 . . CPAMD8 27151 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17068704 17068704 + Silent SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CPAMD8 NM_015692 exon19 c.T2376C p.T792T GAAGAAAGTCCTT . 102.0 26.0 92.0 0.0 . 141 CR1 1378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207791472 207791472 + Missense_Mutation SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CR1 NM_000651 exon42 c.C6946A p.L2316I GTATCTCTATATC . 212.0 87.0 293.0 0.0 . 93 CR1L 1379 ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207870921 207870921 + Silent SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CR1L NM_175710 exon6 c.G936A p.Q312Q CGGGCAGGAAGTG . 421.0 58.0 516.0 1.0 . 46 CUL5 8065 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 107920728 107920728 + Missense_Mutation SNP A A T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CUL5 NM_003478 exon4 c.A346T p.I116F CTAGAGATTACTT . 124.0 11.0 113.0 0.0 . 227 CYB561D1 284613 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 110038869 110038871 + In_Frame_Del DEL AAT AAT - novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 AAT AAT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CYB561D1 NM_001134400 exon3 c.744_746del p.248_249del GAAGAAAATGGAA . 128.0 45.0 204.0 0.0 . 90 CYLC2 1539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 105767486 105767486 + Missense_Mutation SNP A A T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CYLC2 NM_001340 exon5 c.A573T p.K191N CAAAAAAGATAAA . 166.0 44.0 130.0 0.0 . 91 CYP27A1 1593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 219679131 219679131 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . CYP27A1 NM_000784 exon7 c.C1213T p.R405W AACTCCCGGATCA . 84.0 11.0 136.0 0.0 . 91 DENND2A 27147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 140301984 140301984 + Nonsense_Mutation SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . DENND2A NM_015689 exon1 c.G214T p.E72X AATCCTCCTGTCC . 94.0 37.0 179.0 0.0 . 138 DNAH5 1767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 13871081 13871081 + Missense_Mutation SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . DNAH5 NM_001369 exon24 c.C3629T p.T1210I GCCTTTGTCTCAG . 235.0 100.0 325.0 0.0 . 182 DNAJC19 131118 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 180706002 180706002 + Missense_Mutation SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . DNAJC19 NM_145261 exon2 c.G19T p.A7S CAACTGCTACCAC . 217.0 24.0 250.0 0.0 . 226 DYTN 391475 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 207527925 207527925 + Silent SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . DYTN NM_001093730 exon11 c.T1335C p.N445N CTCTGCATTTGTG . 165.0 44.0 229.0 0.0 . 23 EID1 23741 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 49170689 49170689 + Missense_Mutation SNP G G C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . EID1 NM_014335 exon1 c.G316C p.E106Q GACTGGGAGGACG . 50.0 4.0 124.0 0.0 . 91 EMB 133418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 49699137 49699137 + Missense_Mutation SNP T T A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . EMB NM_198449 exon6 c.A752T p.E251V ACAAGCTCAATGT . 269.0 85.0 378.0 0.0 . 90 EML1 2009 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 100361092 100361092 + Missense_Mutation SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . EML1 NM_001008707 exon7 c.G731T p.W244L TGGAATGGGTGTA . 66.0 18.0 107.0 0.0 . 138 EMR1 2015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 6904085 6904085 + Missense_Mutation SNP C C G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . EMR1 NM_001256253 exon8 c.C841G p.P281A TGTGGTCCTAATT . 108.0 12.0 101.0 0.0 . 526 EPS8 2059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 15813579 15813579 + Silent SNP T T C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . EPS8 NM_004447 exon10 c.A906G p.K302K CTTGTTTTTCTTC . 75.0 15.0 71.0 0.0 . 94 ERC2 26059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 56183107 56183107 + Silent SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ERC2 NM_015576 exon5 c.C1203T p.I401I CATCTGGATCTCA . 173.0 60.0 179.0 0.0 . 24 FAM160A1 729830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 152498952 152498952 + Silent SNP A A T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . . NM_001109977 exon5 c.A456T p.G152G TTCAGGAACAACC . 135.0 37.0 240.0 0.0 . . FAM47B 170062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 34961245 34961245 + Silent SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . FAM47B NM_152631 exon1 c.G297A p.K99K GCTCAAGAAAGCG . 85.0 43.0 132.0 0.0 . 196 FASTKD3 79072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 7867391 7867391 + Missense_Mutation SNP T T A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . FASTKD3 NM_024091 exon2 c.A806T p.K269I TCCACTTTTTCAG . 33.0 5.0 18.0 0.0 . 156 FILIP1 27145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 6 76024440 76024440 + Nonsense_Mutation SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . FILIP1 NM_015687 exon5 c.G1108T p.E370X CACATTCTCCTTT . 108.0 26.0 148.0 0.0 . 94 FIP1L1 81608 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 54256750 54256750 + Missense_Mutation SNP G G C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . FIP1L1 NM_030917 exon7 c.G460C p.E154Q CTCTTAGAGGTAG . 61.0 11.0 57.0 0.0 . 1083 FLG 2312 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152283189 152283189 + Silent SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . FLG NM_002016 exon3 c.T4173C p.S1391S ACTACCACTGGAC . 183.0 61.0 205.0 1.0 . 106 FREM2 341640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 39266353 39266353 + Silent SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . FREM2 NM_207361 exon1 c.C4872A p.T1624T TGGCACCCATACA . 111.0 22.0 204.0 0.0 . 100 GARNL3 84253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 130073954 130073954 + Missense_Mutation SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . GARNL3 NM_032293 exon3 c.G259A p.V87M ACAGACGTGCACT . 186.0 23.0 143.0 0.0 . 516 GHSR 2693 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 172162985 172162985 + Missense_Mutation SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . GHSR NM_198407 exon2 c.C1067A p.S356Y GCCCGAGAACTTT . 193.0 31.0 93.0 0.0 . 501 GJA9 81025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 39340262 39340262 + Silent SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . GJA9 NM_030772 exon2 c.T1509C p.N503N AATGAGATTGTTC . 142.0 62.0 133.0 0.0 . 22 HAUS8 93323 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17160925 17160925 + Missense_Mutation SNP G G C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . HAUS8 NM_033417 exon11 c.C991G p.Q331E CTTCCTGGTTTGC . 51.0 21.0 127.0 0.0 . 90 HHIP 64399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 145567924 145567924 + Missense_Mutation SNP G G A rs199961348 TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . HHIP NM_022475 exon1 c.G97A p.G33R GGGAGCGGAGCAA . 43.0 18.0 207.0 0.0 . 283 HIST1H2BD 3017 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 6 26158526 26158526 + Nonsense_Mutation SNP C C G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . HIST1H2BD NM_021063 exon1 c.C129G p.Y43X TGTGTACAAGGTG . 104.0 13.0 201.0 0.0 . 70 IARS2 55699 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 220307815 220307816 + Frame_Shift_Del DEL TT TT - novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . IARS2 NM_018060 exon15 c.1909_1910del p.637_637del TCCTTATTAACAA . 120.0 48.0 126.0 0.0 . 94 IFNGR1 3459 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 137522034 137522034 + Missense_Mutation SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . IFNGR1 NM_000416 exon6 c.T845C p.I282T GGTAATATTATGC . 152.0 9.0 117.0 0.0 . 91 ILF3 3609 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10791742 10791742 + Silent SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ILF3 NM_017620 exon10 c.C1005T p.G335G CCTAGGCATGGAC . 35.0 11.0 107.0 0.0 . 93 INADL 10207 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 62267337 62267337 + Missense_Mutation SNP C C G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . INADL NM_176877 exon12 c.C1445G p.T482S TTCTAACTGGAGC . 261.0 47.0 194.0 0.0 . 94 ITPR3 3710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 33652419 33652419 + Missense_Mutation SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ITPR3 NM_002224 exon38 c.C5091A p.N1697K CCAGAACCGGAAG . 38.0 11.0 211.0 0.0 . 1085 KDM6B 23135 ucsc.edu;bcgsc.ca 37 17 7751676 7751676 + Silent SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . KDM6B NM_001080424 exon11 c.C2070T p.I690I CAAGATCCTACCT . 11.0 4.0 85.0 0.0 . 205 KLB 152831 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 39439384 39439384 + Silent SNP T T C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . KLB NM_175737 exon3 c.T1374C p.T458T TTATACTGCCTGG . 123.0 11.0 155.0 0.0 . 69 LBP 3929 hgsc.bcm.edu;broad.mit.edu 37 20 36999383 36999383 + Frame_Shift_Del DEL C C - novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . LBP NM_004139 exon11 c.1151delC p.A384fs TCCAGGCCACTAA . 186.0 15.0 204.0 0.0 . 91 LDB3 11155 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 88478564 88478564 + Frame_Shift_Del DEL C C - novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . LDB3 NM_001171610 exon12 c.1953delC p.S651fs GAACAGCCTCTTC . 60.0 24.0 151.0 0.0 . 92 LEPREL4 10609 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39959557 39959557 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . LEPREL4 NM_006455 exon7 c.G1273A p.G425S CGTCACCCTTGGC . 11.0 6.0 217.0 1.0 . 90 LILRA2 11027 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 55085353 55085353 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . LILRA2 NM_001130917 exon1 c.C8T p.P3L TGACCCCCATCCT . 92.0 25.0 211.0 1.0 . 91 LPL 4023 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 19809442 19809442 + Missense_Mutation SNP T T A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . LPL NM_000237 exon3 c.T412A p.F138I GCCCGGTTTATCA . 73.0 7.0 192.0 0.0 . 92 LRP12 29967 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 105509410 105509410 + Missense_Mutation SNP T T G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . LRP12 NM_013437 exon5 c.A1370C p.H457P TTACAATGGAAAT . 96.0 13.0 155.0 0.0 . 90 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 141055500 141055500 + Missense_Mutation SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . LRP1B NM_018557 exon84 c.C12844A p.P4282T AGTTTGGCCCAGT . 257.0 24.0 361.0 0.0 . 311 LRRC4 64101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 127670230 127670230 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . LRRC4 NM_022143 exon2 c.G464A p.R155H TTGTTGCGAAGCC . 30.0 16.0 81.0 0.0 . 154 LRRC69 100130742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 92201773 92201773 + Silent SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . . NM_001129890 exon6 c.A675G p.E225E GAGGGAATTCTAC . 70.0 19.0 80.0 0.0 . . LSAMP 4045 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 115805264 115805264 + Missense_Mutation SNP G G C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . LSAMP NM_002338 exon2 c.C295G p.Q99E CCTTCTGGATTCG . 270.0 105.0 321.0 0.0 . 90 LYPD6 130574 broad.mit.edu;bcgsc.ca 37 2 150294299 150294299 + Missense_Mutation SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . LYPD6 NM_194317 exon2 c.G77A p.R26Q AGTCCCGAGACTT . 56.0 35.0 132.0 1.0 . 90 MAGEA12 4111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 151900290 151900290 + Missense_Mutation SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . MAGEA12 NM_005367 exon2 c.C511A p.R171S CGATGCGGACCAC . 311.0 245.0 398.0 2.0 . 131 MFN2 9927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 12069707 12069707 + Missense_Mutation SNP C C G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . MFN2 NM_014874 exon18 c.C2128G p.L710V GAGAACCTGGAGC . 95.0 13.0 182.0 0.0 . 91 MRPL2 51069 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 43023661 43023661 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . MRPL2 NM_015950 exon5 c.G605A p.R202Q GCACCCCGGCCTG . 130.0 11.0 158.0 2.0 . 90 MSMB 4477 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 51562361 51562361 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . MSMB NM_138634 exon3 c.C200T p.T67I GAAGGACCCAAAA . 98.0 7.0 101.0 0.0 . 92 MTMR14 64419 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 9712791 9712791 + Frame_Shift_Del DEL A A - novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . MTMR14 NM_022485 exon6 c.614delA p.Y205fs TTCGATACCTGTC . 146.0 66.0 150.0 0.0 . 91 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 9018487 9018487 + Missense_Mutation SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . MUC16 NM_024690 exon24 c.C37687T p.R12563C CAGGGCGATGCAT . 177.0 12.0 306.0 0.0 . 566 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 9038131 9038131 + Missense_Mutation SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . MUC16 NM_024690 exon8 c.G36145T p.V12049L AAGTCACTGGAGC . 114.0 8.0 103.0 0.0 . 566 MX2 4600 broad.mit.edu;ucsc.edu 37 21 42770846 42770846 + Missense_Mutation SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . MX2 NM_002463 exon9 c.G1172T p.G391V TAGAAGGACAAAT . 40.0 4.0 136.0 0.0 . 92 MYO18A 399687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 27421037 27421037 + Missense_Mutation SNP A A T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . MYO18A NM_078471 exon31 c.T4782A p.D1594E CTCCTCATCCCGA . 63.0 29.0 108.0 0.0 . 22 NDST4 64579 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 115754838 115754838 + Missense_Mutation SNP C C G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . NDST4 NM_022569 exon12 c.G2320C p.D774H CTGGGTCAGATCT . 104.0 9.0 192.0 0.0 . 94 NUP188 23511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 131764256 131764256 + Splice_Site SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . NUP188 NM_015354 exon36 c.4137+1G>A . GCACAGGTGAGTG . 49.0 7.0 134.0 0.0 . 207 OAS2 4939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 113444385 113444385 + Missense_Mutation SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . OAS2 NM_002535 exon8 c.G1636T p.V546L CGCCTGGTGAAGC . 118.0 43.0 132.0 0.0 . 91 OR51G1 79324 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 4944787 4944787 + Silent SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . OR51G1 NM_001005237 exon1 c.T783C p.S261S CACAAGAGACAAG . 113.0 9.0 199.0 0.0 . 70 OR52M1 119772 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 4566482 4566482 + Missense_Mutation SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . OR52M1 NM_001004137 exon1 c.G62A p.G21E TCCCAGGGCTGGA . 96.0 7.0 115.0 2.0 . 68 OR7A10 390892 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 14952528 14952528 + Missense_Mutation SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . OR7A10 NM_001005190 exon1 c.C162A p.H54Q GTGGAGGTGGGAG . 112.0 8.0 126.0 0.0 . 68 OR9G9 504191 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 56468383 56468383 + Missense_Mutation SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . . NM_001013358 exon1 c.G520A p.D174N ATCATTGATGACT . 175.0 13.0 239.0 1.0 . . OXA1L 5018 hgsc.bcm.edu;bcgsc.ca 37 14 23235798 23235798 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . OXA1L NM_005015 exon1 c.C68T p.P23L TTTTACCGCCTGA . 84.0 4.0 195.0 0.0 . 204 PCDH15 65217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 55955547 55955547 + Missense_Mutation SNP G G C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . PCDH15 NM_001142763 exon12 c.C1216G p.Q406E AGCCTTGATAACT . 89.0 45.0 139.0 0.0 . 193 PDZRN3 23024 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 73651611 73651611 + Missense_Mutation SNP T T C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . PDZRN3 NM_015009 exon3 c.A812G p.D271G TGGTTATCCTTTG . 130.0 19.0 140.0 2.0 . 232 PIK3C2G 5288 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 18747452 18747452 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . PIK3C2G NM_004570 exon29 c.C3913T p.L1305F TTTTTCCTCTCTG . 180.0 39.0 134.0 2.0 . 1312 PJA2 9867 hgsc.bcm.edu;broad.mit.edu 37 5 108714875 108714875 + Missense_Mutation SNP A A C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . PJA2 NM_014819 exon4 c.T313G p.C105G AACCACAAGTGGG . 82.0 5.0 96.0 0.0 . 92 PLA2G2F 64600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 20474797 20474797 + Missense_Mutation SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . PLA2G2F NM_022819 exon5 c.A539G p.Y180C ATGTCTACTGCCA . 119.0 40.0 318.0 0.0 . 91 PLEKHG6 55200 broad.mit.edu;bcgsc.ca 37 12 6436779 6436780 + Frame_Shift_Ins INS - - A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 - - . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . PLEKHG6 NM_001144856 exon15 c.2030_2031insA p.R677fs CCGAGCGAGGGAA . 9.0 5.0 49.0 0.0 . 295 PRADC1 84279 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 73456048 73456048 + Silent SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . PRADC1 NM_032319 exon4 c.C321T p.H107H CCCGCCGTGCTCC . 28.0 10.0 120.0 0.0 . 90 PRKAA2 5563 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 57173335 57173335 + Silent SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . PRKAA2 NM_006252 exon9 c.C1608A p.T536T TCACACCATGGAT . 158.0 40.0 148.0 1.0 . 885 RAB11FIP1 80223 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 37729417 37729417 + Missense_Mutation SNP T T C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . RAB11FIP1 NM_001002814 exon4 c.A2903G p.D968G TCATCATCCGATG . 106.0 6.0 292.0 0.0 . 92 RAB19 401409 ucsc.edu;bcgsc.ca 37 7 140125861 140125861 + Missense_Mutation SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . RAB19 NM_001008749 exon4 c.G565T p.G189W CTATATGGGGAGA . 66.0 18.0 165.0 2.0 . 22 RALYL 138046 broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 85785541 85785541 + Silent SNP C C G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . RALYL NM_001100391 exon7 c.C633G p.T211T ACAGACCATCAAG . 190.0 18.0 186.0 1.0 . 23 RAPGEF2 9693 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 160262813 160262813 + Missense_Mutation SNP A A T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . RAPGEF2 NM_014247 exon14 c.A2149T p.S717C CAGCTCAGCACTG . 172.0 45.0 257.0 0.0 . 637 RBL1 5933 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 35684006 35684006 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . RBL1 NM_183404 exon11 c.G1417A p.E473K CAGTCTCTAGTAT . 99.0 12.0 59.0 0.0 . 419 RHOBTB3 22836 bcgsc.ca;mdanderson.org 37 5 95067575 95067575 + Silent SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . RHOBTB3 NM_014899 exon2 c.C15T p.I5I CCACATCGTGGCG . 8.0 3.0 142.0 0.0 . 228 RPS6KA6 27330 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 83359655 83359655 + Missense_Mutation SNP T T C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . RPS6KA6 NM_014496 exon17 c.A1466G p.D489G CTACCATCATCAA . 174.0 155.0 106.0 0.0 . 615 SALL4 57167 hgsc.bcm.edu;broad.mit.edu 37 20 50406807 50406807 + Missense_Mutation SNP C C A rs41274696 byfrequency TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SALL4 NM_020436 exon2 c.G2215T p.A739S AAGGGGCAGGACC . 80.0 4.0 138.0 0.0 C|0.998;A|0.002 92 SCRN1 9805 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 29980369 29980369 + Missense_Mutation SNP G G C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SCRN1 NM_001145514 exon5 c.C728G p.S243C ACTTCGGAAAAAT . 101.0 22.0 156.0 1.0 . 92 SEMA3D 223117 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 84727158 84727158 + Missense_Mutation SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SEMA3D NM_152754 exon2 c.T275C p.L92P CTGAGTAGAAAGA . 159.0 16.0 178.0 0.0 . 138 SETDB1 9869 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 150900277 150900277 + Silent SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SETDB1 NM_012432 exon2 c.G87A p.V29V GGCAGTGGTTGAG . 378.0 32.0 322.0 0.0 . 228 SGOL2 151246 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 201437093 201437093 + Missense_Mutation SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SGOL2 NM_001160046 exon7 c.G2024A p.R675K CTACTAGAGATAA . 162.0 16.0 181.0 1.0 . 94 SLC17A6 57084 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 22380967 22380967 + Missense_Mutation SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SLC17A6 NM_020346 exon4 c.G467T p.G156V TTTTCGGAGCTGC . 94.0 11.0 102.0 0.0 . 580 SLC30A8 169026 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 118175766 118175766 + Nonsense_Mutation SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SLC30A8 NM_173851 exon6 c.G826T p.E276X CTCATGGAAGGTA . 42.0 22.0 67.0 0.0 . 229 SLC30A8 169026 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 118175765 118175765 + Missense_Mutation SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SLC30A8 NM_173851 exon6 c.G825A p.M275I ACTCATGGAAGGT . 42.0 22.0 68.0 0.0 . 229 SLC4A10 57282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 162807235 162807235 + Missense_Mutation SNP A A T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SLC4A10 NM_001178015 exon19 c.A2418T p.L806F GCCTTTAGGTCCA . 167.0 32.0 160.0 0.0 . 229 SLFN13 146857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 33770885 33770885 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SLFN13 NM_144682 exon4 c.G1121A p.S374N GAAGGACTGTCAG . 183.0 51.0 83.0 0.0 . 91 SORCS3 22986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 106959827 106959827 + Missense_Mutation SNP C C T rs202188584 alternate_allele TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 SORCS3,brain,glioma,-2 SORCS3 NM_014978 exon15 c.C2080T p.R694W TTCAGCCGGCATT . 76.0 27.0 218.0 0.0 . 99 SPAG16 79582 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 214727353 214727353 + Splice_Site SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SPAG16 NM_024532 exon11 c.1214+1G>T . TCCCAGGTCAGTG . 85.0 11.0 160.0 0.0 . 188 SRP72 6731 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 57344756 57344756 + Splice_Site SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SRP72 NM_006947 exon8 c.768-2A>G . GTTCACAGACCAA . 226.0 93.0 374.0 2.0 . 116 SRSF5 6430 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 70237779 70237779 + Missense_Mutation SNP A A T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SRSF5 NM_001039465 exon7 c.A508T p.N170Y GAAATAAATGGGA . 92.0 46.0 84.0 0.0 . 226 SSFA2 6744 broad.mit.edu;bcgsc.ca 37 2 182780658 182780658 + Missense_Mutation SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SSFA2 NM_001130445 exon11 c.C2291A p.T764N AAGAGACCAGATG . 118.0 6.0 131.0 1.0 . 153 SYCP2L 221711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 10924837 10924837 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . SYCP2L NM_001040274 exon15 c.C1181T p.S394L ACATATCACAAGT . 103.0 33.0 69.0 0.0 . 24 TADA2A 6871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 35836972 35836972 + Missense_Mutation SNP A A G novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . TADA2A NM_001488 exon16 c.A1217G p.N406S AATGTAACAAGCA . 159.0 24.0 111.0 0.0 . 230 TAF3 83860 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 8006085 8006085 + Silent SNP G G T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . TAF3 NM_031923 exon3 c.G612T p.T204T GGACACGCTAGAT . 144.0 51.0 270.0 2.0 . 69 TAS2R10 50839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 10978718 10978718 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . TAS2R10 NM_023921 exon1 c.G151A p.A51T AAATAGCTAAGCC . 91.0 35.0 98.0 0.0 . 90 TBR1 10716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 162276744 162276744 + Missense_Mutation SNP A A T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . TBR1 NM_006593 exon5 c.A1166T p.K389I TTGCAAAAGGATT . 127.0 70.0 130.0 0.0 . 91 TBX3 6926 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 115118767 115118767 + Missense_Mutation SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . TBX3 NM_005996 exon2 c.G574T p.A192S CAGTAGCGGGGCT . 299.0 113.0 368.0 1.0 . 93 TENM3 55714 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 183650121 183650121 + Missense_Mutation SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . . NM_001080477 exon13 c.G2372A p.G791E CAGATGGACTCAT . 106.0 6.0 168.0 0.0 . . TMTC2 160335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 83290361 83290361 + Silent SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . TMTC2 NM_152588 exon3 c.G1419A p.R473R GATCAGGAATGGA . 124.0 17.0 60.0 0.0 . 92 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7577142 7577142 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 TP53,NS,carcinoma,+1 TP53 NM_000546 exon8 c.G796A p.G266R TCCGTCCCAGTAG . 60.0 7.0 123.0 0.0 . 70225 TRIP11 9321 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 92436115 92436115 + Missense_Mutation SNP G G C novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . TRIP11 NM_004239 exon21 c.C5842G p.L1948V GTTTCAGAAGAAG . 221.0 9.0 270.0 0.0 . 1400 TRPM2 7226 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 45811268 45811268 + Silent SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . TRPM2 NM_003307 exon11 c.C1554T p.T518T GGACACCTTGCTC . 132.0 16.0 273.0 1.0 . 92 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179404631 179404631 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . TTN NM_001267550 exon352 c.G98161A p.V32721I TGATGACGCCACC . 127.0 55.0 172.0 0.0 . 636 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179596523 179596523 + Silent SNP G G A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . TTN NM_001267550 exon58 c.C17079T p.S5693S CTGCAGGCTAACC . 111.0 24.0 134.0 0.0 . 636 UBA6 55236 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 68497490 68497490 + Splice_Site SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . UBA6 NM_018227 exon26 c.2195-1G>T . ATAAACCTGGCAA . 137.0 45.0 123.0 1.0 . 90 USP10 9100 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 84801856 84801856 + Silent SNP G G A rs185085167 by1000genomes TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . USP10 NM_001272075 exon12 c.G1902A p.T634T TTTCACGTTGCAG . 92.0 29.0 175.0 0.0 G|0.999;A|0.000 636 XIRP2 129446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 168105466 168105466 + Missense_Mutation SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . XIRP2 NM_152381 exon9 c.C7564A p.H2522N AAATCTCATTCAT . 93.0 49.0 95.0 0.0 . 104 ZFC3H1 196441 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 72017915 72017915 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ZFC3H1 NM_144982 exon23 c.G4475A p.G1492E CATCTTCCAGTAA . 80.0 5.0 59.0 0.0 . 138 ZMYM4 9202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 35857909 35857909 + Missense_Mutation SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ZMYM4 NM_005095 exon16 c.C2684A p.A895D CAAGTGCCCCTGC . 226.0 95.0 225.0 0.0 . 291 ZNF202 7753 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 123601551 123601551 + Missense_Mutation SNP C C T novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ZNF202 NM_003455 exon4 c.G46A p.E16K TTCCCTCTTCTTC . 96.0 21.0 168.0 0.0 . 91 ZNF658 26149 broad.mit.edu;mdanderson.org 37 9 40774978 40774978 + Missense_Mutation SNP C C A novel TCGA-BW-A5NO-01A-11D-A27I-10 TCGA-BW-A5NO-10A-01D-A27I-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 81a8b064-e735-455f-b2db-af7ae11daac4 3033ae06-ebb4-4dbb-9f60-b9b9d5c72805 . ZNF658 NM_033160 exon5 c.G297T p.W99C TTCTTGCCACAGA . 78.0 7.0 39.0 0.0 . 45