Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AASS	10157	broad.mit.edu;bcgsc.ca	37	7	121726206	121726206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	AASS	NM_005763	exon19	c.T2044C	p.F682L	CAAGAAAGGAGAT	.	71.0	4.0	99.0	1.0	.	92
ABCG5	64240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	44053584	44053584	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ABCG5	NM_022436	exon6	c.A711C	p.E237D	AGCCAGTTCCACC	.	184.0	61.0	150.0	0.0	.	92
ADAMTS10	81794	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8661249	8661249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ADAMTS10	NM_030957	exon10	c.G1132A	p.V378I	CATTGACGCTGCA	.	95.0	24.0	42.0	1.0	.	229
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79063584	79063584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ADAMTS7	NM_014272	exon16	c.G2438A	p.G813D	TGGCCACCTGCCT	.	208.0	39.0	142.0	0.0	.	226
AMTN	401138	hgsc.bcm.edu;broad.mit.edu	37	4	71396955	71396955	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	AMTN	NM_212557	exon8	c.557delC	p.T186fs	TGACCACCCCTGC	.	202.0	14.0	186.0	0.0	.	153
ATP2C2	9914	broad.mit.edu;bcgsc.ca	37	16	84482138	84482138	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ATP2C2	NM_014861	exon17	c.1504-1G>T	.	TTCTAAGGATCAG	.	150.0	7.0	127.0	0.0	.	91
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52437456	52437456	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	BAP1	NM_004656	exon13	c.1705delG	p.V569fs	TCAGCACCCCATC	.	53.0	19.0	47.0	0.0	.	1032
C3orf58	205428	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	143704410	143704410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	C3orf58	NM_173552	exon2	c.C683T	p.P228L	GTTGGCCATTTGC	.	260.0	70.0	233.0	1.0	.	91
CCDC104	112942	hgsc.bcm.edu;bcgsc.ca	37	2	55772122	55772124	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CCDC104	NM_080667	exon10	c.1007_1009del	p.336_337del	AACTCAAAGAAGA	.	264.0	59.0	446.0	0.0	.	91
CD1E	913	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158325699	158325699	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CD1E	NM_001042584	exon4	c.C708T	p.Y236Y	ATTCTACCCAAAG	.	320.0	14.0	273.0	0.0	.	93
CDH1	999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68856129	68856129	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CDH1	NM_004360	exon12	c.1936+1G>A	.	ACCCAAGTGGGTA	.	89.0	17.0	82.0	0.0	.	3377
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123177407	123177407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CDK5RAP2	NM_018249	exon28	c.G4208A	p.R1403Q	AAAGTTCGAATTT	.	280.0	32.0	209.0	0.0	.	229
CHPF2	54480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150934562	150934562	+	Missense_Mutation	SNP	G	G	A	rs139379425	byfrequency;alternate_allele	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CHPF2	NM_019015	exon4	c.G1114A	p.V372M	TTTGAGGTGCTGG	.	236.0	62.0	97.0	0.0	G|1.000;T|0.000	91
CHRNA1	1134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	175624066	175624066	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	CHRNA1	NM_001039523	exon3	c.T227A	p.L76Q	TGTTTCAGACGCA	.	247.0	78.0	216.0	0.0	.	518
DCDC5	100506627	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	30937205	30937205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DCDC5	NM_020869	exon8	c.A827G	p.Y276C	TCTCTGTATTCGA	.	294.0	80.0	318.0	1.0	.	23
DMBT1	1755	broad.mit.edu;bcgsc.ca	37	10	124399625	124399625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	DMBT1	NM_007329	exon52	c.A6625G	p.R2209G	AAGAGGAGGACAG	.	125.0	5.0	152.0	2.0	.	494
FAM53C	51307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	137681062	137681062	+	Missense_Mutation	SNP	C	C	T	rs145095111		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FAM53C	NM_001135647	exon4	c.C685T	p.R229C	CCTCAGCGCCGCT	.	49.0	14.0	29.0	0.0	C|1.000;T|0.000	91
FBXO10	26267	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	37518350	37518350	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	FBXO10	NM_012166	exon9	c.G2286A	p.V762V	CTGGGCCACAGTA	.	331.0	29.0	207.0	1.0	.	637
GPR125	166647	broad.mit.edu;bcgsc.ca	37	4	22389481	22389481	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GPR125	NM_145290	exon19	c.G3813A	p.V1271V	TTCAACCACAGCT	.	123.0	6.0	240.0	1.0	.	91
GPR82	27197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41586732	41586732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GPR82	NM_080817	exon3	c.T453A	p.F151L	CAACTTTGCTAGA	.	100.0	13.0	182.0	0.0	.	110
GYPA	2993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	145039884	145039884	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	GYPA	NM_002099	exon4	c.A254T	p.H85L	AAATGATGGGCAA	.	370.0	87.0	722.0	0.0	.	514
HTR6	3362	broad.mit.edu;mdanderson.org	37	1	20005787	20005787	+	Missense_Mutation	SNP	G	G	A	rs200009000		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	HTR6	NM_000871	exon3	c.G1249A	p.A417T	GCTGCCGCCGTCA	.	33.0	13.0	26.0	0.0	.	91
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499	bycluster	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	IDH1,brain,glioma,+1	IDH1	NM_005896	exon4	c.C394T	p.R132C	CATGACGACCTAT	.	294.0	86.0	267.0	0.0	.	23522
KANK1	23189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	738429	738429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KANK1	NM_001256876	exon12	c.G3478A	p.G1160S	GCAGACGGCAACG	.	255.0	80.0	219.0	1.0	.	517
KLRG2	346689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139164446	139164446	+	Missense_Mutation	SNP	G	G	A	rs138023732	byfrequency	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KLRG2	NM_198508	exon3	c.C932T	p.A311V	GCCTGCGCTTCTG	.	54.0	9.0	35.0	0.0	G|1.000;A|0.000	90
KPRP	448834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152732812	152732812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KPRP	NM_001025231	exon2	c.C748T	p.R250W	CGCTCTCGGAGCA	.	82.0	26.0	58.0	0.0	.	95
KRTAP10-11	386678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	46066650	46066650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	KRTAP10-11	NM_198692	exon1	c.C275G	p.S92C	GCACCTCCTCCCC	.	247.0	23.0	191.0	0.0	.	91
LRRN2	10446	ucsc.edu;bcgsc.ca	37	1	204587323	204587323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LRRN2	NM_006338	exon3	c.G1798A	p.A600T	CAAAGGCCACTTG	.	51.0	5.0	29.0	0.0	.	514
LRTOMT	220074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	71819726	71819726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	LRTOMT	NM_001145308	exon7	c.C631A	p.L211M	GCAGACCTGGTGC	.	36.0	9.0	28.0	0.0	.	68
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39907974	39907974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MACF1	NM_012090	exon73	c.G12753T	p.E4251D	GGGTGAGAAAATT	.	123.0	39.0	128.0	0.0	.	165
MAPKAP1	79109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128230302	128230302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MAPKAP1	NM_001006617	exon10	c.A1294G	p.I432V	AATCGATTGAGAT	.	394.0	30.0	384.0	0.0	.	678
MAPKBP1	23005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42110257	42110257	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MAPKBP1	NM_001128608	exon18	c.1973delA	p.Q658fs	GGTCACAGGGTGA	.	193.0	45.0	148.0	0.0	.	589
MGAT5B	146664	broad.mit.edu;bcgsc.ca	37	17	74901327	74901327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MGAT5B	NM_198955	exon6	c.A800G	p.K267R	TGAAGAAGCGGAC	.	196.0	14.0	141.0	2.0	.	93
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129901092	129901092	+	Silent	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MKI67	NM_002417	exon13	c.A9012T	p.G3004G	GACGCTTCCATCT	.	73.0	32.0	107.0	0.0	.	519
MMP16	4325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	89180036	89180036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MMP16	NM_005941	exon4	c.G571A	p.G191S	GGAAACCAGATGC	.	135.0	33.0	188.0	0.0	.	231
MUC16	94025	ucsc.edu;bcgsc.ca	37	19	9083584	9083584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	MUC16	NM_024690	exon1	c.T8231C	p.I2744T	ACTGTGATCGAAC	.	45.0	4.0	142.0	0.0	.	566
NLGN4X	57502	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5821679	5821679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	NLGN4X	NM_181332	exon5	c.A1040G	p.D347G	ATGACGTCGCCGT	.	567.0	176.0	413.0	2.0	.	195
OR8H2	390151	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55872687	55872687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	OR8H2	NM_001005200	exon1	c.C169T	p.H57Y	CAGCTTCACACTC	.	302.0	33.0	301.0	1.0	.	70
PALM2-AKAP2	445815	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	112918686	112918686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PALM2-AKAP2	NM_007203	exon9	c.G3083A	p.G1028E	CTGCCGGAACCCA	.	99.0	10.0	119.0	1.0	.	475
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55839135	55839135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PCDH15	NM_001142763	exon18	c.C2062T	p.R688C	TGTAGCGATCAGT	.	151.0	61.0	264.0	1.0	.	193
PCDH20	64881	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	61987587	61987587	+	Silent	SNP	C	C	T	rs201107730	alternate_allele	TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PCDH20	NM_022843	exon2	c.G645A	p.S215S	CCACACCGAGATC	.	92.0	20.0	107.0	1.0	C|0.999;A|0.000	581
PCDHGC5	56097	broad.mit.edu;bcgsc.ca	37	5	140890573	140890573	+	Missense_Mutation	SNP	C	C	T	rs148119281		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PCDHGC5	NM_018929	exon4	c.C2668T	p.R890C	AGCGCCCGCTACG	.	203.0	10.0	136.0	1.0	C|1.000;T|0.000	25
PICALM	8301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	85712084	85712084	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PICALM	NM_007166	exon10	c.T1011C	p.A337A	CTTTAAAGCTTTC	.	584.0	158.0	520.0	0.0	.	659
PRKAA2	5563	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	57161707	57161707	+	Silent	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PRKAA2	NM_006252	exon6	c.G663A	p.T221T	ACCTACGTTATTT	.	595.0	37.0	568.0	1.0	.	885
PRMT8	56341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	3702274	3702274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	PRMT8	NM_019854	exon10	c.G1111A	p.D371N	GACCTCGATTTCA	.	126.0	15.0	108.0	0.0	.	94
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	37756823	37756823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RAB11FIP1	NM_025151	exon1	c.A137T	p.Q46L	CCCACCTGGATCA	.	79.0	26.0	24.0	0.0	.	92
RAB27B	5874	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	52556472	52556472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RAB27B	NM_004163	exon6	c.C485A	p.T162K	TTGAAACAAGTGC	.	71.0	24.0	134.0	1.0	.	227
RIC8A	60626	broad.mit.edu;ucsc.edu	37	11	214285	214285	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RIC8A	NM_021932	exon10	c.C1549T	p.Q517X	TCCCTGCAGGATG	.	138.0	9.0	82.0	0.0	.	514
RIMS2	9699	ucsc.edu;bcgsc.ca	37	8	104897856	104897856	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	RIMS2	NM_001100117	exon4	c.A1029G	p.P343P	TTATCCAGTAAAG	.	44.0	4.0	130.0	0.0	.	279
SCN10A	6336	ucsc.edu;bcgsc.ca	37	3	38830477	38830477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SCN10A	NM_006514	exon3	c.T440C	p.M147T	CGGGTCATGCACA	.	42.0	5.0	113.0	0.0	.	99
SEMA5B	54437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122629075	122629075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SEMA5B	NM_001256347	exon23	c.C3533T	p.T1178M	GTAGTCGTGTACA	.	704.0	231.0	620.0	0.0	.	157
SERAC1	84947	ucsc.edu;bcgsc.ca	37	6	158535835	158535835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SERAC1	NM_032861	exon15	c.A1670G	p.K557R	AGTTCTTTGACTT	.	46.0	4.0	111.0	0.0	.	90
SGCA	6442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48244792	48244792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SGCA	NM_001135697	exon2	c.G101T	p.R34L	TGGGCCGTGTCTT	.	219.0	51.0	130.0	0.0	.	92
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38610466	38610466	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SIPA1L3	NM_015073	exon9	c.C2812T	p.L938L	ATCTTCCTACAGG	.	76.0	31.0	47.0	0.0	.	91
SLC4A8	9498	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	51863457	51863457	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SLC4A8	NM_001039960	exon12	c.A1409C	p.Y470S	GCGACTACCGAGA	.	522.0	49.0	548.0	2.0	.	95
SLCO2B1	11309	broad.mit.edu;bcgsc.ca	37	11	74904564	74904564	+	Silent	SNP	G	G	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SLCO2B1	NM_007256	exon9	c.G1377A	p.P459P	CCTGCCGCTCTTC	.	211.0	10.0	159.0	0.0	.	154
SLX4IP	128710	broad.mit.edu;bcgsc.ca	37	20	10603454	10603454	+	Silent	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_001009608	exon8	c.C654T	p.S218S	AGAATCCATGGGA	.	68.0	5.0	54.0	0.0	.	.
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53409455	53409455	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SMC1A	NM_006306	exon21	c.A3257T	p.K1086M	AGGGCCTTATAGA	.	139.0	37.0	137.0	0.0	.	232
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109339272	109339272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	STXBP3	NM_007269	exon15	c.T1280A	p.I427N	GGTTGATCCAGAA	.	208.0	61.0	230.0	0.0	.	93
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67957441	67957441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	SUV420H1	NM_017635	exon2	c.A103T	p.T35S	TCCCCGTGTGCTG	.	462.0	122.0	538.0	0.0	.	228
TCEANC2	127428	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	54520147	54520148	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TCEANC2	NM_153035	exon2	c.52_53insT	p.K18fs	CAGAAGAAAGATT	.	151.0	43.0	110.0	0.0	.	91
TMC1	117531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	75355074	75355074	+	Silent	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TMC1	NM_138691	exon9	c.T402A	p.L134L	GGCTCTTGGGAAA	.	275.0	67.0	271.0	0.0	.	91
TMEM260	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57075883	57075883	+	Silent	SNP	C	C	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	.	NM_017799	exon6	c.C696G	p.P232P	GCTGCCCTATGTC	.	610.0	133.0	582.0	0.0	.	.
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111797619	111797619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TMPRSS7	NM_001042575	exon15	c.C1877T	p.A626V	AGCAAGCGGAGGT	.	231.0	64.0	218.0	0.0	.	70
TNKS	8658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	9627614	9627614	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TNKS	NM_003747	exon26	c.3741-2A>T	.	TTCCTTAGACAAA	.	38.0	21.0	28.0	0.0	.	660
TOPORS	10210	ucsc.edu;bcgsc.ca	37	9	32544214	32544214	+	Silent	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TOPORS	NM_005802	exon3	c.T309C	p.C103C	TATAGGACACTTA	.	46.0	4.0	40.0	0.0	.	230
TRPM3	80036	ucsc.edu;bcgsc.ca	37	9	73253992	73253992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TRPM3	NM_001007471	exon11	c.A1565G	p.E522G	AATTCCTCTAGTC	.	45.0	4.0	78.0	0.0	.	521
TUFT1	7286	broad.mit.edu;bcgsc.ca	37	1	151553434	151553434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TUFT1	NM_020127	exon12	c.A1025G	p.D342G	TGCATGACCGGAT	.	84.0	6.0	77.0	0.0	.	90
TYW1	55253	hgsc.bcm.edu;bcgsc.ca	37	7	66582482	66582482	+	Silent	SNP	G	G	A	rs13221716		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	TYW1	NM_018264	exon13	c.G1575A	p.P525P	CGAGCCGGTTACT	.	198.0	8.0	186.0	0.0	.	91
USP37	57695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	219423315	219423315	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	USP37	NM_020935	exon4	c.62delA	p.K21fs	TTCCACTTTGTAA	.	301.0	86.0	335.0	0.0	.	661
VPS36	51028	ucsc.edu;bcgsc.ca	37	13	52997746	52997746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	VPS36	NM_016075	exon10	c.A803G	p.E268G	TACACCTCCGTGA	.	34.0	4.0	73.0	0.0	.	91
ZFC3H1	196441	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72057379	72057379	+	Silent	SNP	T	T	A	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZFC3H1	NM_144982	exon1	c.A12T	p.A4A	AGTATCTGCGGTC	.	43.0	10.0	35.0	0.0	.	138
ZNF518B	85460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	10446101	10446101	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5260-01A-01D-A12Z-10	TCGA-CC-5260-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3bacc189-01b8-46cc-a442-f393c0f428c6	bf471c04-91b1-4ccc-9cd2-101b7f008edc	.	ZNF518B	NM_053042	exon3	c.T1852A	p.L618I	TCTTTAATTCCAA	.	293.0	77.0	403.0	1.0	.	72