Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	1051263	1051263	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ABCA7	NM_019112	exon20	c.A2794T	p.K932X	GTCTCCAAGCAGA	.	85.0	27.0	53.0	0.0	.	98
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183667834	183667834	+	Silent	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ABCC5	NM_005688	exon21	c.A3024T	p.A1008A	GACTCCTGCGATC	.	143.0	45.0	105.0	0.0	.	137
ABHD8	79575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17412326	17412326	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ABHD8	NM_024527	exon2	c.A100T	p.T34S	CAAAGGTGTAGCC	.	49.0	23.0	26.0	0.0	.	90
AOAH	313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	36633945	36633945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	AOAH	NM_001637	exon12	c.G938A	p.G313E	ACTTACCCAACAG	.	213.0	12.0	146.0	0.0	.	91
ARAF	369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47428285	47428285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ARAF	NM_001256196	exon11	c.G1254T	p.Q418H	TGCCCAGGGCATG	.	106.0	84.0	62.0	0.0	.	1557
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	668557	668557	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	B4GALNT3	NM_173593	exon19	c.G2858A	p.W953X	ACCGCTGGGGCGG	.	93.0	34.0	69.0	0.0	.	92
BCL9	607	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147092307	147092307	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	BCL9	NM_004326	exon8	c.A2346T	p.R782S	CCCCAGACCATTC	.	120.0	33.0	66.0	1.0	.	707
BTN2A2	10385	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26390936	26390936	+	Splice_Site	SNP	G	G	A	rs200463511		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	BTN2A2	NM_001197238	exon6	c.952+1G>A	.	AATTGCGTAAGTT	.	694.0	199.0	513.0	2.0	G|0.999;A|0.001	90
C20orf26	26074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20056165	20056165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	C20orf26	NM_015585	exon6	c.G472T	p.G158W	CAAGTGGGGAACA	.	169.0	69.0	161.0	1.0	.	94
CALN1	83698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	71571275	71571275	+	Silent	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CALN1	NM_031468	exon4	c.C249A	p.I83I	CTCTCGGATTTCT	.	56.0	20.0	45.0	0.0	.	91
CCDC108	255101	bcgsc.ca;mdanderson.org	37	2	219893116	219893116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CCDC108	NM_194302	exon12	c.T1658C	p.L553P	AGGAACAGTGGGT	.	224.0	88.0	139.0	2.0	.	94
CD19	930	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28946809	28946809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CD19	NM_001178098	exon5	c.G880A	p.A294T	GTCTCAGCTGTGA	.	607.0	217.0	394.0	2.0	.	92
CEP135	9662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56846403	56846403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CEP135	NM_025009	exon12	c.A1568T	p.Q523L	ATATACAGTCCAA	.	432.0	168.0	502.0	0.0	.	94
CEP76	79959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12691398	12691398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CEP76	NM_024899	exon7	c.G893T	p.R298L	GAGGGTCGAATTT	.	205.0	101.0	162.0	1.0	.	90
CHD8	57680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21878045	21878045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CHD8	NM_001170629	exon10	c.C2329T	p.R777W	GAATCCGTTTAAA	.	311.0	30.0	331.0	0.0	.	277
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57759022	57759022	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CLTC	NM_004859	exon21	c.T3264C	p.H1088H	TGAGCATATTGGA	.	179.0	93.0	147.0	0.0	.	835
COL22A1	169044	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	139736902	139736902	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	COL22A1	NM_152888	exon25	c.G2203T	p.G735X	TCTCTCCAGGCAA	.	45.0	10.0	38.0	1.0	.	103
CRLF3	51379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29119458	29119458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CRLF3	NM_015986	exon6	c.G959A	p.R320K	ACTTGCCTGAATG	.	131.0	46.0	116.0	0.0	.	90
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47610101	47610101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	CYP4A22	NM_001010969	exon7	c.A863G	p.H288R	AGAGGCACTTGGA	.	435.0	176.0	325.0	1.0	.	139
DOK1	1796	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74783904	74783904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DOK1	NM_001381	exon5	c.C1109A	p.P370Q	TGGCCCCAGTCCC	.	113.0	36.0	82.0	2.0	.	226
DVL2	1856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7129551	7129551	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	DVL2	NM_004422	exon15	c.A1844C	p.K615T	CCGGACTTGGACT	.	25.0	14.0	14.0	0.0	.	659
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38427282	38427282	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EGFLAM	NM_001205301	exon14	c.T1982A	p.F661Y	AAGACTTCCTGTC	.	165.0	43.0	104.0	0.0	.	187
EIF4E3	317649	ucsc.edu;bcgsc.ca	37	3	71748795	71748795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EIF4E3	NM_001134651	exon3	c.A314G	p.H105R	ATTAAATGATAAC	.	50.0	5.0	72.0	0.0	.	90
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21231426	21231426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	EIF4G3	NM_001198802	exon13	c.C1552T	p.P518S	CTTTTGGTTTCTT	.	393.0	144.0	372.0	0.0	.	91
ELMO2	63916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45004003	45004003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ELMO2	NM_182764	exon12	c.A937G	p.R313G	TGTCCCTTTGAGC	.	206.0	76.0	152.0	0.0	.	91
ERCC6	2074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	50732464	50732464	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ERCC6	NM_000124	exon5	c.A1012T	p.K338X	AAGCCCTCTTCTG	.	985.0	364.0	736.0	2.0	.	1153
EVA1B	55194	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	36788575	36788575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_018166	exon2	c.C64G	p.R22G	CACCGCGGATGTG	.	256.0	82.0	175.0	1.0	.	.
FAM134C	162427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	40733882	40733889	+	Frame_Shift_Del	DEL	CAGAAGTT	CAGAAGTT	-	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	CAGAAGTT	CAGAAGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FAM134C	NM_178126	exon9	c.1343_1350del	p.448_450del	CTGGTCCAGAAGT	.	98.0	22.0	47.0	0.0	.	70
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80039104	80039104	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FASN	NM_004104	exon38	c.C6531T	p.R2177R	CACCTCGCGCACG	.	113.0	68.0	43.0	0.0	.	90
FGF20	26281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	16853235	16853235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FGF20	NM_019851	exon2	c.C319A	p.L107M	TGACCAGTCCCAC	.	103.0	56.0	152.0	0.0	.	522
FGFBP1	9982	ucsc.edu;bcgsc.ca	37	4	15937856	15937856	+	Missense_Mutation	SNP	C	C	T	rs143214990	byfrequency;alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FGFBP1	NM_005130	exon3	c.G400A	p.V134M	TTTTCACAGCTGT	.	445.0	181.0	397.0	2.0	C|0.999;G|0.001	90
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	76024218	76024218	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FILIP1	NM_015687	exon5	c.A1330T	p.K444X	TACTCTTGCTAAA	.	662.0	328.0	457.0	1.0	.	94
FNIP2	57600	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159790073	159790073	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FNIP2	NM_020840	exon13	c.A2285T	p.Q762L	ACCCGCAGGTTTC	.	99.0	39.0	59.0	1.0	.	68
FPGT	8790	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74671212	74671212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	FPGT	NM_003838	exon4	c.G1481T	p.G494V	TCTTTGGAGTCTG	.	206.0	72.0	214.0	1.0	.	91
GATA3-AS1	399717	broad.mit.edu;mdanderson.org	37	10	8093125	8093125	+	RNA	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	GGGTGGGAGGGAC	.	216.0	98.0	139.0	2.0	.	.
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	89910835	89910835	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	GPR98	NM_032119	exon2	c.C206A	p.S69X	TTGTATCGGTAAG	.	110.0	63.0	227.0	0.0	.	103
HOXD4	3233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	177017653	177017653	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	HOXD4	NM_014621	exon2	c.G751C	p.D251H	CACACGGACCTGA	.	138.0	52.0	86.0	0.0	.	91
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	160454027	160454027	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	IGF2R	NM_000876	exon9	c.G1099T	p.G367X	GTCTGTGGAGAAA	.	197.0	59.0	143.0	0.0	.	118
ITPK1	3705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93483123	93483123	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ITPK1	NM_001142593	exon4	c.G144A	p.E48E	CTGCTCCTCGATC	.	71.0	34.0	47.0	0.0	.	115
KCNJ18	100134444	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	21319449	21319449	+	Silent	SNP	G	G	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001194958	exon3	c.G795C	p.V265V	TCTGGTGTCGCCC	.	184.0	34.0	136.0	1.0	.	.
KHSRP	8570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6416830	6416830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KHSRP	NM_003685	exon13	c.G1246A	p.G416S	CTTGGCCTCTTCC	.	34.0	14.0	31.0	0.0	.	226
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123274094	123274094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIAA1109	NM_015312	exon79	c.G13885A	p.V4629I	CCTGGAGTATTGA	.	152.0	52.0	121.0	0.0	.	80
KIAA2026	158358	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5922996	5922996	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIAA2026	NM_001017969	exon8	c.G3000A	p.Q1000Q	CCCTTTCTGGAGA	.	356.0	112.0	316.0	2.0	.	92
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	72343926	72343926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIF19	NM_153209	exon9	c.G935A	p.G312E	CTCTGGGAGGAAA	.	50.0	13.0	26.0	0.0	.	90
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245847619	245847619	+	Silent	SNP	G	G	A	rs201075952		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KIF26B	NM_018012	exon11	c.G2343A	p.A781A	GGCCGCGGTCGGG	.	124.0	42.0	68.0	0.0	G|0.999;A|0.001	25
KL	9365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33638123	33638123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KL	NM_004795	exon5	c.A2839G	p.I947V	AGGAAAATTATTG	.	225.0	51.0	322.0	0.0	.	155
KLHL33	123103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20897958	20897958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001109997	exon2	c.C877A	p.L293I	ACCTGAGAGTTGA	.	76.0	24.0	66.0	0.0	.	.
KRT28	162605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38955214	38955214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KRT28	NM_181535	exon2	c.T488C	p.L163P	ATCTGCAGAATGA	.	782.0	217.0	595.0	0.0	.	91
KRT78	196374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53237937	53237937	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	KRT78	NM_173352	exon6	c.C987T	p.I329I	CTGAGAGATCTGG	.	402.0	152.0	289.0	0.0	.	188
LAT	27040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	29001267	29001267	+	Silent	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LAT	NM_001014989	exon12	c.C744A	p.S248S	GAGTTCCCAGGAG	.	161.0	53.0	95.0	0.0	.	44
LCP2	3937	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169697820	169697820	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	LCP2	NM_005565	exon7	c.C426T	p.D142D	ATCCGCGTCATCT	.	348.0	124.0	242.0	1.0	.	23
LOC100132247	0	broad.mit.edu;bcgsc.ca	37	16	22545898	22545898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001135865	exon7	c.A1594C	p.T532P	ATCAAGACACCTG	.	104.0	23.0	53.0	1.0	.	.
LOC100289092	0	broad.mit.edu;bcgsc.ca	37	16	28890418	28890418	+	RNA	SNP	A	A	G	rs201535825		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	.	CTGGGTAGAGCTC	.	236.0	90.0	196.0	1.0	A|0.999;G|0.000	.
MASTL	84930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27459791	27459791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MASTL	NM_032844	exon8	c.A1903T	p.M635L	CAAAAAATGTTAG	.	139.0	49.0	110.0	0.0	.	522
MCM7	4176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99693701	99693701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MCM7	NM_005916	exon11	c.G1291T	p.G431C	CCCCACCCTCTAA	.	94.0	35.0	69.0	0.0	.	651
MLLT4	4301	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168271129	168271129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MLLT4	NM_001207008	exon3	c.G365A	p.R122Q	ATGATCGGGAAGG	.	234.0	23.0	160.0	2.0	.	685
MLPH	79083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238449167	238449167	+	Silent	SNP	G	G	A	rs202229121		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MLPH	NM_024101	exon10	c.G1281A	p.A427A	CCAGGCGGACCCG	.	25.0	14.0	21.0	0.0	G|0.999;A|0.000	91
MNDA	4332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158817665	158817665	+	Missense_Mutation	SNP	C	C	A	rs139902913	alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MNDA	NM_002432	exon6	c.C1135A	p.R379S	GTTGACCGCAAGC	.	145.0	58.0	127.0	0.0	C|1.000;T|0.000	94
MPP2	4355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41958848	41958848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MPP2	NM_005374	exon7	c.A791C	p.Q264P	TCATCCTGGTTTA	.	105.0	30.0	55.0	0.0	.	90
MPPE1	65258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	11889442	11889442	+	Silent	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MPPE1	NM_001242904	exon4	c.A438T	p.P146P	ATGACTTGGGTGT	.	203.0	50.0	135.0	0.0	.	90
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9045799	9045799	+	Silent	SNP	G	G	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MUC16	NM_024690	exon5	c.C35832G	p.T11944T	TATCAAGGTCATA	.	455.0	148.0	313.0	0.0	.	566
MYH7	4625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23902387	23902387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYH7	NM_000257	exon4	c.T251C	p.F84S	TTGTCGAACTTGG	.	288.0	111.0	248.0	2.0	.	94
MYLK3	91807	hgsc.bcm.edu;mdanderson.org	37	16	46766546	46766546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYLK3	NM_182493	exon4	c.G1036A	p.G346R	TCTCCCCAGGAGT	.	18.0	14.0	8.0	0.0	.	374
MYO3B	140469	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171242774	171242774	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYO3B	NM_001083615	exon13	c.T1366C	p.L456L	ACTTTCTTGGGAA	.	371.0	129.0	296.0	2.0	.	530
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	52638630	52638630	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	MYO5A	NM_000259	exon30	c.3887delT	p.L1296fs	TCTTCCAAAAGTA	.	274.0	107.0	280.0	0.0	.	93
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101717813	101717813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NALCN	NM_052867	exon40	c.G4547A	p.C1516Y	TCGTAGCACATGT	.	130.0	42.0	64.0	0.0	.	167
NCKAP5	344148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	133547663	133547663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_207481	exon13	c.G1025T	p.S342I	CAGGTGCTTGAAA	.	159.0	73.0	120.0	1.0	.	.
NF2	4771	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30050696	30050696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NF2	NM_000268	exon5	c.G498T	p.E166D	CCAAGAGGAATTG	.	268.0	117.0	229.0	2.0	.	4696
NOM1	64434	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	156743259	156743259	+	Silent	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NOM1	NM_138400	exon1	c.A828T	p.A276A	GGAAGCAGAAGCG	.	132.0	57.0	101.0	1.0	.	90
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155718096	155718096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NOX3	NM_015718	exon13	c.C1581A	p.S527R	ACTGCTGCTGCAG	.	159.0	38.0	77.0	0.0	.	91
NPBWR2	2832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62737266	62737266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NPBWR2	NM_005286	exon1	c.G919A	p.A307T	AGTTGGCGTAGCT	.	73.0	28.0	71.0	0.0	.	153
NR4A2	4929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	157186659	157186659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NR4A2	NM_006186	exon3	c.G40A	p.G14R	TGGCTCCTTGAGG	.	147.0	38.0	122.0	0.0	.	189
NUMA1	4926	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	71721833	71721833	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NUMA1	NM_006185	exon17	c.A4718C	p.K1573T	CCCACCTTCAGCT	.	46.0	16.0	26.0	0.0	.	633
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154033436	154033436	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	NUP210L	NM_001159484	exon19	c.T2730C	p.Y910Y	GTGGTTATAGATG	.	324.0	118.0	262.0	0.0	.	77
OPHN1	4983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	67283856	67283856	+	Silent	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OPHN1	NM_002547	exon21	c.A1998T	p.P666P	CACCTCTGGGCAG	.	216.0	168.0	114.0	0.0	.	110
OR10V1	390201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	59481145	59481145	+	Silent	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR10V1	NM_001005324	exon1	c.C174A	p.P58P	GTACATGGGGGTG	.	231.0	10.0	167.0	0.0	.	68
OR4F15	390649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102359072	102359072	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR4F15	NM_001001674	exon1	c.A683T	p.H228L	GGAAACATTCTTC	.	989.0	257.0	611.0	0.0	.	68
OR4M1	441670	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	20249422	20249422	+	Silent	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR4M1	NM_001005500	exon1	c.G941A	p.X314X	AGAAGTGAAAGAT	.	554.0	98.0	494.0	1.0	.	68
OR5M10	390167	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56345082	56345082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001004741	exon1	c.T116A	p.L39Q	CCTGCCAGTGTGA	.	508.0	195.0	418.0	2.0	.	.
OR6C75	390323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55759521	55759521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	OR6C75	NM_001005497	exon1	c.G627T	p.L209F	CACCTTGACATTA	.	466.0	174.0	406.0	1.0	.	70
PDE10A	10846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165846593	165846593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PDE10A	NM_001130690	exon7	c.G562C	p.G188R	CCAGTCCAGTACC	.	323.0	84.0	231.0	0.0	.	519
PDXDC1	23042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	15126797	15126797	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PDXDC1	NM_015027	exon18	c.A1651T	p.K551X	CTGAAGAAGTTAA	.	138.0	52.0	124.0	0.0	.	91
PGLYRP4	57115	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153314164	153314164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PGLYRP4	NM_020393	exon6	c.G564T	p.Q188H	AAGTGGCTGAACA	.	132.0	55.0	77.0	1.0	.	94
PMVK	10654	hgsc.bcm.edu;bcgsc.ca	37	1	154904884	154904884	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PMVK	NM_006556	exon2	c.G103C	p.A35P	CATCAGCTCCAAG	.	259.0	14.0	179.0	0.0	.	115
PPARD	5467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35378867	35378867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PPARD	NM_001171818	exon4	c.G3T	p.M1I	AGCCATGGAGCAG	.	129.0	38.0	81.0	0.0	.	187
PPP1R12C	54776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55606963	55606963	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PPP1R12C	NM_017607	exon10	c.A1236G	p.E412E	GGCCTCTTCAAGC	.	54.0	18.0	25.0	0.0	.	227
PPP2R4	5524	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131909703	131909703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PPP2R4	NM_178001	exon11	c.T1037C	p.F346S	TCAAGTTCGGGAG	.	87.0	45.0	40.0	1.0	.	660
PPP2R4	5524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131909700	131909700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PPP2R4	NM_178001	exon11	c.A1034G	p.K345R	ACTTCAAGTTCGG	.	88.0	44.0	43.0	0.0	.	660
PTGER3	5733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	71512812	71512812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PTGER3	NM_001126044	exon1	c.C449T	p.A150V	GCCATGGCGCTGG	.	51.0	24.0	24.0	0.0	.	660
PTPRH	5794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55716907	55716907	+	Missense_Mutation	SNP	C	C	A	rs144055741	alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	PTPRH	NM_002842	exon4	c.G406T	p.A136S	TCAGGGCGATGGA	.	396.0	156.0	255.0	0.0	C|1.000;T|0.000	138
RALBP1	10928	broad.mit.edu;ucsc.edu;mdanderson.org	37	18	9535918	9535918	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RALBP1	NM_006788	exon10	c.A1951T	p.K651X	GATAGGAAGGAGA	.	153.0	52.0	75.0	1.0	.	522
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114425456	114425456	+	Silent	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001145346	exon1	c.A1452T	p.G484G	CAGTGGAGGCTGC	.	62.0	13.0	33.0	0.0	.	.
RCOR1	23186	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103174914	103174914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RCOR1	NM_015156	exon6	c.A773G	p.E258G	AGCGGGAGGAGAG	.	95.0	29.0	83.0	1.0	.	91
RNF182	221687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13977395	13977395	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RNF182	NM_001165032	exon4	c.T45C	p.S15S	GGCCTCTGATGAG	.	193.0	85.0	113.0	0.0	.	586
RXFP3	51289	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	33937817	33937817	+	Silent	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	RXFP3	NM_016568	exon1	c.C972A	p.V324V	GAAGGTCACCAAA	.	170.0	102.0	58.0	2.0	.	91
SASH1	23328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	148867236	148867236	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SASH1	NM_015278	exon19	c.T3434A	p.M1145K	CCAACATGGACCA	.	104.0	51.0	57.0	0.0	.	90
SCCPDH	51097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	246923373	246923373	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SCCPDH	NM_016002	exon8	c.A928T	p.I310L	CTTCTCATAAAAG	.	934.0	323.0	854.0	1.0	.	91
SEMA3C	10512	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	80432006	80432006	+	Silent	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SEMA3C	NM_006379	exon9	c.C891A	p.G297G	TTCTGGGCCGTCT	.	173.0	62.0	148.0	1.0	.	515
SEPT2	4735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242275425	242275425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SEPT2	NM_001008491	exon6	c.A253G	p.T85A	GCTTCAACTGTTG	.	200.0	77.0	153.0	1.0	.	68
SIGLEC1	6614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3669214	3669214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SIGLEC1	NM_023068	exon21	c.T5123A	p.L1708Q	CAGCCCAGGGGTG	.	107.0	44.0	81.0	0.0	.	167
SLC1A3	6507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36684073	36684073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLC1A3	NM_004172	exon9	c.C1397T	p.T466M	ACATCACGCTCAT	.	383.0	87.0	173.0	0.0	.	90
SLC22A18	5002	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	2939298	2939298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLC22A18	NM_002555	exon7	c.G736T	p.V246L	TTCCTGGTGAAGG	.	151.0	46.0	105.0	1.0	.	92
SLFN11	91607	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33690385	33690385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLFN11	NM_152270	exon2	c.G442T	p.A148S	AGAATGCCTCTCT	.	142.0	42.0	133.0	2.0	.	159
SLIT3	6586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	168127670	168127670	+	Silent	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SLIT3	NM_001271946	exon27	c.T2880C	p.T960T	GGGCACAGTGCAG	.	176.0	60.0	153.0	1.0	.	95
SMG8	55181	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	57288227	57288227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SMG8	NM_018149	exon1	c.A815G	p.N272S	AACTCAATGGAGC	.	126.0	74.0	67.0	1.0	.	93
ST13	6767	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41223190	41223190	+	Missense_Mutation	SNP	C	C	A	rs710193	byfrequency;alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ST13	NM_003932	exon11	c.G891T	p.M297I	TCCAGGCATTCCT	.	49.0	20.0	39.0	0.0	C|0.941;T|0.059	226
ST6GALNAC1	55808	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74625419	74625419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ST6GALNAC1	NM_018414	exon2	c.G506A	p.G169D	GTCTGGCCCCCAT	.	670.0	201.0	345.0	2.0	.	90
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109340799	109340799	+	Silent	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	STXBP3	NM_007269	exon16	c.G1389T	p.R463R	GGATCGGTCTGCA	.	598.0	245.0	536.0	1.0	.	93
STXBP3	6814	ucsc.edu;bcgsc.ca	37	1	109340798	109340798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	STXBP3	NM_007269	exon16	c.G1388T	p.R463L	AGGATCGGTCTGC	.	600.0	246.0	533.0	2.0	.	93
SULT2B1	6820	ucsc.edu;bcgsc.ca	37	19	49094943	49094943	+	Missense_Mutation	SNP	G	G	T	rs149312079	byfrequency;alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SULT2B1	NM_177973	exon4	c.G501T	p.K167N	GTTAAAGGACCCG	.	52.0	6.0	45.0	0.0	G|0.998;A|0.002	91
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	58444857	58444857	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SYCP2	NM_014258	exon35	c.3737delG	p.R1246fs	ACCTCTCTTTTGC	.	196.0	70.0	280.0	0.0	.	525
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	40854035	40854035	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SYT4	NM_020783	exon2	c.A359T	p.N120I	GTTGCATTCTCCA	.	329.0	105.0	207.0	0.0	.	132
SYT6	148281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114646254	114646254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	SYT6	NM_205848	exon4	c.C906A	p.N302K	CTTGAGGTTCCGA	.	83.0	39.0	76.0	0.0	.	94
TBX19	9095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	168262484	168262484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TBX19	NM_005149	exon3	c.T571C	p.F191L	ACCCAGTTCATAG	.	126.0	52.0	67.0	0.0	.	90
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179603595	179603595	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TDRD5	NM_173533	exon8	c.A1130T	p.Q377L	TAGTTCAGTCAGA	.	184.0	73.0	183.0	0.0	.	94
TET3	200424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74327943	74327943	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_144993	exon9	c.A3623T	p.Q1208L	CCAGCCAGGCTGT	.	69.0	27.0	46.0	0.0	.	.
TGM1	7051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24727745	24727745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TGM1	NM_000359	exon8	c.G1294T	p.V432F	ACCAGACAGAATC	.	338.0	108.0	277.0	1.0	.	91
TGM1	7051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24730963	24730963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TGM1	NM_000359	exon3	c.T446C	p.M149T	AGGAGCATATGGA	.	253.0	84.0	181.0	1.0	.	91
TMEM170A	124491	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75485578	75485578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TMEM170A	NM_145254	exon2	c.G293A	p.G98E	AAGATTCCAGCAG	.	67.0	37.0	88.0	0.0	.	68
TMEM59L	25789	broad.mit.edu;mdanderson.org	37	19	18731265	18731265	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TMEM59L	NM_012109	exon8	c.G948A	p.W316X	CGATTGGCCCCTG	.	41.0	9.0	30.0	0.0	.	94
TNFRSF19	55504	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24243206	24243206	+	Silent	SNP	C	C	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TNFRSF19	NM_018647	exon9	c.C1215A	p.V405V	TGCTGTCATCCAC	.	145.0	37.0	65.0	1.0	.	228
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7577107	7577107	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	TP53,NS,carcinoma,-2	TP53	NM_000546	exon8	c.T831A	p.C277X	CCCAGGACAGGCA	.	65.0	47.0	87.0	0.0	.	70225
TPST1	8460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65751568	65751568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TPST1	NM_003596	exon3	c.A916G	p.I306V	GGGAAGATACCGC	.	147.0	68.0	139.0	0.0	.	90
TTC21A	199223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	39171742	39171742	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TTC21A	NM_145755	exon17	c.G2233T	p.E745X	CAGCCCGAGAAGG	.	63.0	42.0	77.0	0.0	.	91
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179419703	179419703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	TTN	NM_001267550	exon331	c.C88483T	p.L29495F	ATGCGAGGTCCGT	.	198.0	79.0	150.0	0.0	.	636
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94088075	94088075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_020818	exon30	c.A3965G	p.Q1322R	TCAAACAAAAATC	.	182.0	63.0	149.0	0.0	.	.
YWHAG	7532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75959524	75959524	+	Silent	SNP	C	C	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	YWHAG,NS,carcinoma,-1	YWHAG	NM_012479	exon2	c.G114C	p.S38S	CTCATTCGACAGT	.	56.0	27.0	36.0	0.0	.	523
ZC3H7B	23264	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	41739420	41739420	+	Silent	SNP	C	C	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZC3H7B	NM_017590	exon13	c.C1299T	p.G433G	CATAGGCCCCCGG	.	108.0	36.0	50.0	0.0	.	90
ZIC4	84107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	147120535	147120535	+	Missense_Mutation	SNP	C	C	G	rs148365070	alternate_allele	TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZIC4	NM_001168378	exon2	c.G200C	p.R67P	GTGTTTCGGTAAA	.	191.0	65.0	181.0	0.0	C|0.999;T|0.001	91
ZNF141	7700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	367384	367397	+	Frame_Shift_Del	DEL	AAAAATTCATACTG	AAAAATTCATACTG	-	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	AAAAATTCATACTG	AAAAATTCATACTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF141	NM_003441	exon4	c.1158_1171del	p.386_391del	ACATAAAAAAATT	.	130.0	0.0	112.0	0.0	.	90
ZNF230	7773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44514563	44514563	+	Silent	SNP	C	C	G	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF230	NM_006300	exon5	c.C372G	p.S124S	CCCCTCCCAGGTT	.	134.0	95.0	193.0	0.0	.	90
ZNF264	9422	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	57723567	57723567	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	ZNF264	NM_003417	exon4	c.G1102T	p.E368X	ACCGGGGAGAAGC	.	192.0	77.0	172.0	1.0	.	92
ZNF469	84627	ucsc.edu;bcgsc.ca	37	16	88501177	88501177	+	Silent	SNP	T	T	C	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_001127464	exon2	c.T7215C	p.T2405T	CCAGACTCCCCAG	.	52.0	6.0	86.0	1.0	.	.
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23927768	23927768	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	NM_138286	exon4	c.T584A	p.V195E	AAATTTACTCTAG	.	202.0	77.0	280.0	0.0	.	.
MAB21L1	4081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	36050192	36050193	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	p.A28E	AGTTTTGGCAATG	.	56.0	35.0	82.0	0.0	.	.
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	158262498	158262499	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	p.A643N	TTAGCTGCCTTCC	.	608.0	231.0	639.0	0.0	.	.
CITED2	10370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139694674	139694675	+	Missense_Mutation	DNP	CG	CG	TT	novel		TCGA-CC-5263-01A-01D-A12Z-10	TCGA-CC-5263-10B-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b3dc66b5-ad21-46ef-bea2-13b364e8f7ee	e354902e-c055-43ca-ad8a-29b0cd8fd07d	.	.	.	.	.	p.P136Q	CAAATCCGGCATG	.	288.0	141.0	154.0	0.0	.	.