Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AASS	10157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	121756964	121756964	+	Silent	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	AASS	NM_005763	exon7	c.C735G	p.P245P	TTCATGGGGCTCC	.	118.0	19.0	94.0	0.0	.	92
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9667941	9667941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADAM17	NM_003183	exon5	c.G593A	p.G198E	ACTAACCCTTTTG	.	92.0	28.0	155.0	0.0	.	659
ADAM18	8749	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39537556	39537556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADAM18	NM_014237	exon16	c.G1632T	p.K544N	TTCCAGGGATGTT	.	154.0	69.0	138.0	2.0	.	228
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43833853	43833853	+	Silent	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADAMTS20	NM_025003	exon17	c.G2310T	p.G770G	AAAATTCCCTTCA	.	38.0	16.0	45.0	0.0	.	795
ARHGAP23	57636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	36622999	36622999	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARHGAP23	NM_001199417	exon7	c.A1075T	p.T359S	CGGGCCACCCGTT	.	108.0	44.0	38.0	0.0	.	205
ARHGAP42	143872	ucsc.edu;bcgsc.ca	37	11	100792301	100792301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_152432	exon6	c.T563C	p.V188A	AAGAGGTCCAAGA	.	42.0	4.0	173.0	0.0	.	.
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157502282	157502282	+	Silent	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARID1B	NM_020732	exon12	c.C3315G	p.V1105V	CTACGTCTGCGTC	.	111.0	40.0	40.0	0.0	.	154
ARNT2	9915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80767490	80767490	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARNT2	NM_014862	exon5	c.T548G	p.L183R	GCACACTGTATGA	.	187.0	153.0	111.0	0.0	.	175
ATP10A	57194	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25953217	25953217	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ATP10A	NM_024490	exon12	c.G2481A	p.L827L	GCTTTGCAACCAG	.	165.0	123.0	96.0	2.0	.	139
B9D2	80776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41860879	41860879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	B9D2	NM_030578	exon4	c.G254T	p.S85I	CCAAAGCTGTCCT	.	72.0	43.0	32.0	0.0	.	69
BAZ1A	11177	ucsc.edu;bcgsc.ca	37	14	35280226	35280226	+	Missense_Mutation	SNP	T	T	C	rs145884653	byfrequency	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	BAZ1A	NM_182648	exon5	c.A553G	p.I185V	GATCAATTGCATC	.	30.0	4.0	136.0	0.0	T|1.000;C|0.000	291
BMP7	655	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	55840845	55840845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	BMP7	NM_001719	exon1	c.A334T	p.S112C	GGGTACTGAAGAC	.	177.0	79.0	61.0	0.0	.	187
C20orf26	26074	broad.mit.edu;bcgsc.ca	37	20	20150077	20150077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C20orf26	NM_015585	exon13	c.A1358G	p.Y453C	ACCTCTACGTCTT	.	150.0	7.0	117.0	1.0	.	94
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37186475	37186475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C5orf42	NM_023073	exon24	c.G4102T	p.A1368S	GAAATGCTTTCAC	.	567.0	136.0	217.0	0.0	.	94
C9	735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	39306883	39306883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C9	NM_001737	exon9	c.A1252G	p.S418G	TTTCACTGGTGAT	.	178.0	47.0	162.0	1.0	.	90
CABIN1	23523	ucsc.edu;bcgsc.ca	37	22	24479290	24479290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CABIN1	NM_001199281	exon20	c.T2858C	p.F953S	ACAGCTTCCCCAG	.	15.0	4.0	43.0	0.0	.	94
CADPS	8618	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62467411	62467411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CADPS	NM_003716	exon22	c.A3160T	p.I1054L	CATATATAGCAGC	.	203.0	113.0	207.0	1.0	.	281
CCDC6	8030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61572436	61572436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCDC6	NM_005436	exon5	c.A804C	p.E268D	TTCCACTTCATTC	.	96.0	82.0	153.0	0.0	.	686
CFTR	1080	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117292987	117292987	+	Splice_Site	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CFTR	NM_000492	exon24	c.3963+2T>G	.	ATGAGGTAAGGCT	.	130.0	54.0	290.0	2.0	.	518
CRB2	286204	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	126134509	126134509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CRB2	NM_173689	exon9	c.C2490A	p.H830Q	CTTCCACTGTACC	.	235.0	97.0	91.0	2.0	.	91
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	88886016	88886016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DCAF4L2	NM_152418	exon1	c.C184T	p.H62Y	AGCTATGAATCTG	.	544.0	270.0	199.0	0.0	.	91
DHRS3	9249	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	12677249	12677249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DHRS3	NM_004753	exon1	c.C105A	p.D35E	CGACAGGTCCCGC	.	133.0	75.0	56.0	1.0	.	91
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	76421607	76421607	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DNAH17	NM_173628	exon80	c.T12961A	p.W4321R	CCAGCCACACGGT	.	100.0	12.0	31.0	0.0	.	142
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	77075702	77075702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ENGASE	NM_001042573	exon4	c.A548G	p.H183R	ACAGGCATGGGGT	.	197.0	82.0	65.0	0.0	.	91
ERAP2	64167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96219543	96219543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ERAP2	NM_001130140	exon3	c.T623C	p.F208S	TGGCTTTCCCTTG	.	175.0	149.0	250.0	0.0	.	68
ERBB2IP	55914	broad.mit.edu;bcgsc.ca	37	5	65288707	65288707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ERBB2IP	NM_001253701	exon3	c.A161G	p.D54G	ATTTAGATGCTAA	.	46.0	4.0	82.0	0.0	.	653
EXO1	9156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	242045224	242045224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EXO1	NM_130398	exon14	c.G2116A	p.D706N	GAATCTGATTGCA	.	210.0	77.0	467.0	1.0	.	661
FAM124B	79843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225266346	225266346	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FAM124B	NM_024785	exon1	c.G140C	p.R47P	CTGGCCCGTTCAG	.	65.0	53.0	59.0	0.0	.	92
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159048703	159048703	+	Silent	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FAM198B	NM_001031700	exon6	c.T1440A	p.S480S	AAACAGAGACTGA	.	76.0	64.0	134.0	0.0	.	90
FAM20A	54757	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66533757	66533757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FAM20A	NM_017565	exon11	c.T1487C	p.L496P	AGGGCAAGGAGGT	.	242.0	85.0	149.0	1.0	.	90
FASN	2194	bcgsc.ca;mdanderson.org	37	17	80051491	80051491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FASN	NM_004104	exon4	c.T437C	p.F146S	AAGAAGAAGGAGA	.	79.0	41.0	40.0	1.0	.	90
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16577289	16577289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FBXO42	NM_018994	exon10	c.G2030T	p.S677I	TGCAGGCTGGTTT	.	393.0	133.0	236.0	0.0	.	228
FEV	54738	broad.mit.edu;bcgsc.ca	37	2	219846741	219846741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FEV	NM_017521	exon3	c.A365G	p.Y122C	TAGGCGTAGCGCT	.	171.0	8.0	68.0	0.0	.	846
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	46930408	46930408	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GABRA4	NM_000809	exon9	c.C1499A	p.S500X	GTAGCTGACAACT	.	99.0	63.0	196.0	1.0	.	156
GJC1	10052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42883077	42883077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GJC1	NM_005497	exon3	c.G109C	p.A37P	CTACAGCTGTAAG	.	230.0	96.0	139.0	0.0	.	248
GLB1	2720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	33106973	33106973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GLB1	NM_001135602	exon3	c.G322A	p.A108T	AACTGGCCCTCCA	.	428.0	230.0	314.0	0.0	.	135
GSE1	23199	hgsc.bcm.edu;bcgsc.ca	37	16	85687939	85687940	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_014615	exon4	c.482_483del	p.161_161del	AGCCCCCGCTCCC	.	148.0	121.0	94.0	0.0	.	.
GUK1	2987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	228336430	228336430	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GUK1	NM_001242840	exon7	c.C603T	p.P201P	CGGGCCCATACAG	.	101.0	49.0	20.0	0.0	.	115
HAND2	9464	hgsc.bcm.edu;bcgsc.ca	37	4	174450187	174450187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HAND2	NM_021973	exon1	c.C254A	p.P85Q	GCGCCCGGCGGCA	.	22.0	22.0	7.0	0.0	.	91
HEPH	9843	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	65393436	65393436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HEPH	NM_138737	exon4	c.C580G	p.L194V	GGTTCCCTATACC	.	51.0	13.0	34.0	0.0	.	135
HOXC8	3224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54405067	54405067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HOXC8	NM_022658	exon2	c.G631T	p.D211Y	AACAAGGATAAAC	.	146.0	33.0	43.0	0.0	.	91
IFI16	3428	hgsc.bcm.edu;bcgsc.ca	37	1	159015214	159015214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	IFI16	NM_001206567	exon7	c.A1289T	p.Q430L	CTCCTCAGATGCC	.	1731.0	213.0	1314.0	0.0	.	91
ITGAV	3685	broad.mit.edu;bcgsc.ca	37	2	187540575	187540575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ITGAV	NM_002210	exon28	c.T2849C	p.L950P	ATTCTCTGAAGTC	.	117.0	5.0	297.0	0.0	.	653
KCNA1	3736	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5021299	5021299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNA1	NM_000217	exon2	c.A755G	p.N252S	TCAAAAACATCAT	.	262.0	117.0	96.0	2.0	.	228
KCNAB1	7881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	156009791	156009791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNAB1	NM_172159	exon1	c.T95A	p.V32E	CCAATGTGGTGAA	.	313.0	27.0	141.0	0.0	.	94
KCNJ18	100134444	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	21319829	21319829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001194958	exon3	c.C1175A	p.A392E	ATGAGGCGGACGG	.	100.0	21.0	25.0	0.0	.	.
KDELR1	10945	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	48886580	48886580	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KDELR1	NM_006801	exon5	c.A609G	p.L203L	CCCCTTTAGGACT	.	107.0	56.0	49.0	0.0	.	90
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123268886	123268886	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIAA1109	NM_015312	exon74	c.G13081C	p.A4361P	TCCCCAGCTTCCA	.	60.0	17.0	138.0	0.0	.	80
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138550956	138550956	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIAA1244	NM_020340	exon5	c.T387C	p.D129D	ATTTGATCTGAAT	.	406.0	181.0	302.0	0.0	.	228
KISS1	3814	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	204159887	204159887	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KISS1	NM_002256	exon3	c.G142T	p.E48X	TCTGCTCCCCGGG	.	101.0	50.0	26.0	0.0	.	947
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	55599301	55599301	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIT	NM_000222	exon17	c.T2427A	p.C809X	GATTTGTGATTTT	.	82.0	17.0	174.0	0.0	.	20166
KRT6C	286887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52863028	52863028	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KRT6C	NM_173086	exon9	c.A1513T	p.S505C	AGCCACTGCCGAC	.	135.0	29.0	72.0	0.0	.	114
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134369796	134369796	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KY	NM_178554	exon1	c.C7T	p.L3L	TCTTCAGCTCCAT	.	325.0	85.0	138.0	0.0	.	24
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	209789918	209789918	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LAMB3	NM_000228	exon22	c.C3280T	p.Q1094X	AACTCTGACCCAA	.	631.0	221.0	166.0	0.0	.	156
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133948175	133948175	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LAMC3	NM_006059	exon19	c.T3370A	p.S1124T	CTGGAGTCCTCGG	.	283.0	127.0	94.0	0.0	.	93
LONP1	9361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	5699211	5699211	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LONP1	NM_004793	exon10	c.C1512T	p.S504S	GGCAATGAACTCC	.	43.0	27.0	22.0	0.0	.	91
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141250227	141250227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRP1B	NM_018557	exon57	c.G9070A	p.E3024K	TTATCTCATGATG	.	59.0	15.0	113.0	0.0	.	311
LRPPRC	10128	broad.mit.edu;mdanderson.org	37	2	44201378	44201378	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRPPRC	NM_133259	exon9	c.C1066T	p.Q356X	AAATTTGCAACGC	.	594.0	29.0	409.0	1.0	.	93
LRRC45	201255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79982609	79982609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRRC45	NM_144999	exon3	c.A323G	p.K108R	TGGGAAAACTCCT	.	108.0	46.0	51.0	0.0	.	91
MAP4K5	11183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50915494	50915494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MAP4K5	NM_006575	exon15	c.A1072G	p.M358V	TTACCATTTCATC	.	39.0	29.0	200.0	0.0	.	546
MASP2	10747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11107262	11107262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MASP2	NM_139208	exon1	c.G3A	p.M1I	CTACCTCATGGTG	.	112.0	36.0	47.0	0.0	.	94
MBD3	53615	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	1578491	1578491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MBD3	NM_003926	exon6	c.G724T	p.A242S	TCAGCGCCTCCTC	.	98.0	20.0	39.0	0.0	.	93
MCM10	55388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13239672	13239672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MCM10	NM_182751	exon15	c.C2027T	p.T676I	CAAAAACAAACCC	.	287.0	118.0	148.0	0.0	.	653
MORF4L2	9643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102931737	102931737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MORF4L2	NM_001142422	exon5	c.G219T	p.R73S	GGTCTTCCTCACG	.	219.0	206.0	82.0	0.0	.	130
MYCBP2	23077	broad.mit.edu;bcgsc.ca	37	13	77641991	77641991	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYCBP2	NM_015057	exon71	c.T12180C	p.S4060S	TAGTAAAGAGGTT	.	56.0	5.0	85.0	0.0	.	236
MYO18B	84700	ucsc.edu;bcgsc.ca	37	22	26422560	26422560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MYO18B	NM_032608	exon43	c.A6620G	p.D2207G	TTGGGGACGGCGA	.	45.0	4.0	42.0	0.0	.	142
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	124829344	124829344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NCOR2	NM_006312	exon34	c.G4513A	p.E1505K	TCTCCTCGTAGCA	.	72.0	18.0	17.0	0.0	.	229
NFE2	4778	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54687079	54687079	+	Silent	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NFE2	NM_001261461	exon4	c.C201A	p.P67P	TGAGCAGGGGCAG	.	1042.0	450.0	389.0	2.0	.	226
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55493601	55493601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NLRP2	NM_017852	exon6	c.A535T	p.S179C	GGAGATAGCAAAG	.	240.0	124.0	104.0	0.0	.	120
NRCAM	4897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107807387	107807387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NRCAM	NM_001037132	exon27	c.G3445A	p.D1149N	ACACATCCTCTGA	.	188.0	19.0	81.0	1.0	.	156
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107836240	107836240	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NRCAM	NM_001037132	exon12	c.T1428C	p.C476C	GAAGGCACAGTCT	.	359.0	177.0	223.0	0.0	.	156
NUAK2	81788	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205272673	205272673	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NUAK2	NM_030952	exon7	c.G1792C	p.D598H	AAGGATCCTGCCG	.	215.0	85.0	66.0	0.0	.	391
OPRK1	4986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	54147486	54147486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OPRK1	NM_000912	exon3	c.C443G	p.T148S	GTCAAGGTGAAGA	.	225.0	64.0	99.0	0.0	.	70
OR10A2	341276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6891293	6891293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR10A2	NM_001004460	exon1	c.C308T	p.A103V	TCCTGGCTACCAT	.	265.0	114.0	134.0	0.0	.	113
OR13D1	286365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107457698	107457698	+	Silent	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR13D1	NM_001004484	exon1	c.T996A	p.A332A	AGAGGCTGTAAAG	.	131.0	36.0	122.0	0.0	.	70
OR2W1	26692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29012335	29012335	+	Silent	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR2W1	NM_030903	exon1	c.T618A	p.I206I	GAGGACAATTATA	.	257.0	77.0	226.0	0.0	.	93
OR5L1	219437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55579471	55579471	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR5L1	NM_001004738	exon1	c.T529G	p.F177V	AACCACTTTTTCT	.	842.0	114.0	552.0	1.0	.	73
OTOF	9381	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	26725219	26725219	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OTOF	NM_194248	exon7	c.C659A	p.S220X	GACACCGAGTCGG	.	188.0	22.0	37.0	1.0	.	135
PIBF1	10464	ucsc.edu;bcgsc.ca	37	13	73369662	73369662	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PIBF1	NM_006346	exon4	c.T519C	p.P173P	TTTTCCTGAAGAT	.	44.0	4.0	253.0	0.0	.	136
PITPNM3	83394	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6360967	6360970	+	Frame_Shift_Del	DEL	AGGC	AGGC	-	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	AGGC	AGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PITPNM3	NM_031220	exon19	c.2563_2566del	p.855_856del	TCTGGGAGGCAGG	.	55.0	41.0	52.0	0.0	.	228
PKN3	29941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131476850	131476850	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PKN3	NM_013355	exon12	c.G1491A	p.L497L	TTTCCTGCCCAAG	.	275.0	111.0	89.0	0.0	.	521
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	39792450	39792451	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PLCG1	NM_182811	exon10	c.987_988insT	p.Y329fs	CCACTACTGGATC	.	351.0	139.0	112.0	0.0	.	911
PLS1	5357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142405170	142405170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PLS1	NM_001172312	exon9	c.A933T	p.K311N	CCCTAAAGGTGGG	.	116.0	32.0	87.0	0.0	.	91
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	108155899	108155899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PNPLA8	NM_001256008	exon2	c.C37T	p.L13F	TAAGGAGGTAAAT	.	82.0	43.0	87.0	0.0	.	135
PPP2R5D	5528	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42978962	42978962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PPP2R5D	NM_006245	exon16	c.A1747C	p.K583Q	ACCATCAAGGCAC	.	222.0	114.0	98.0	1.0	.	1082
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	3342300	3342300	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRDM16	NM_022114	exon13	c.A3095T	p.H1032L	ACGAGCACGAGAA	.	114.0	38.0	44.0	0.0	.	660
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68934295	68934295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PREX2	NM_025170	exon4	c.G361C	p.E121Q	TATGATGAATATT	.	43.0	16.0	75.0	0.0	.	390
PRPF39	55015	ucsc.edu;bcgsc.ca	37	14	45578823	45578823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRPF39	NM_017922	exon8	c.A1016G	p.K339R	AGATTAAAAGACC	.	38.0	4.0	172.0	1.0	.	70
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170610173	170610173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RANBP17	NM_022897	exon17	c.A1868G	p.Y623C	TTACTTATATCCT	.	56.0	44.0	288.0	0.0	.	524
RBM8A	9939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145508934	145508934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RBM8A	NM_005105	exon5	c.T361C	p.Y121H	GTTGAATATGAAA	.	483.0	184.0	215.0	0.0	.	90
RCC1	1104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28863318	28863318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RCC1	NM_001048194	exon10	c.G1090A	p.E364K	GGTGCTGAGGAGA	.	264.0	149.0	97.0	0.0	.	228
RTF1	23168	broad.mit.edu;bcgsc.ca	37	15	41767797	41767797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RTF1	NM_015138	exon10	c.A1361G	p.K454R	TTATGAAGTGGAA	.	147.0	7.0	154.0	0.0	.	92
RUSC1-AS1	284618	ucsc.edu;mdanderson.org	37	1	155291138	155291138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001039517	exon2	c.T142C	p.S48P	TCTGGGAGTAAGG	.	642.0	100.0	206.0	0.0	.	.
SBSN	374897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36019030	36019030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SBSN	NM_001166034	exon1	c.G154T	p.D52Y	TGCCATCCAGGGC	.	375.0	209.0	172.0	1.0	.	91
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52056826	52056826	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SCN8A	NM_014191	exon2	c.C225T	p.G75G	CCAAGGCCTGGTT	.	254.0	123.0	151.0	0.0	.	29
SGSM1	129049	ucsc.edu;bcgsc.ca	37	22	25294176	25294176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SGSM1	NM_001039948	exon20	c.G2425A	p.G809S	AGGGATGGCAGCG	.	40.0	4.0	41.0	0.0	.	27
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	148411195	148411195	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SH3TC2	NM_024577	exon9	c.G1057T	p.G353X	CACTTCCCAGGGC	.	153.0	131.0	103.0	0.0	.	92
SHFM1	7979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	96324155	96324155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SHFM1	NM_006304	exon2	c.A125C	p.N42T	TCCCAATTATCCT	.	147.0	17.0	143.0	0.0	.	227
SLC22A14	9389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	38347844	38347844	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC22A14	NM_004803	exon1	c.C327T	p.H109H	CCCCCACCTGTCC	.	273.0	20.0	115.0	0.0	.	90
SLC7A13	157724	ucsc.edu;bcgsc.ca	37	8	87226761	87226761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC7A13	NM_138817	exon4	c.G1294A	p.G432R	GTAATCCGCTGAG	.	34.0	4.0	59.0	0.0	.	90
SRGAP3	9901	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9055115	9055115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SRGAP3	NM_014850	exon17	c.G2024A	p.C675Y	GCCTGGCAGGACA	.	279.0	98.0	318.0	0.0	.	344
SRM	6723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	11119332	11119332	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SRM	NM_003132	exon2	c.C238T	p.Q80X	TCTCCTGGTAGGA	.	337.0	95.0	98.0	0.0	.	90
TACC1	6867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	38678084	38678084	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TACC1	NM_006283	exon3	c.G1322C	p.C441S	ACTTTTGTTCTCC	.	60.0	10.0	16.0	0.0	.	187
THSD7A	221981	ucsc.edu;bcgsc.ca	37	7	11416259	11416259	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	THSD7A	NM_015204	exon26	c.C4827T	p.Y1609Y	TACACCGTAAACC	.	40.0	4.0	72.0	0.0	.	71
TLR1	7096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38799406	38799406	+	Silent	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TLR1	NM_003263	exon4	c.G1047T	p.P349P	CAGGAACGGGCTA	.	79.0	16.0	84.0	0.0	.	524
TLR7	51284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12904609	12904609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TLR7	NM_016562	exon3	c.A982G	p.K328E	TTGGCCAAAGAAA	.	95.0	82.0	86.0	0.0	.	564
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	128899692	128899692	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TMEM132C	NM_001136103	exon2	c.G501A	p.L167L	GAAGCTGCCATGC	.	156.0	26.0	60.0	0.0	.	68
TMEM82	388595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16073479	16073479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TMEM82	NM_001013641	exon5	c.T875A	p.L292H	GCATCCTTGTCTC	.	400.0	114.0	159.0	0.0	.	90
TMPRSS11F	389208	ucsc.edu;bcgsc.ca	37	4	68935724	68935724	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TMPRSS11F	NM_207407	exon6	c.T516C	p.P172P	GTCAATAGCTGGA	.	34.0	4.0	158.0	0.0	.	91
TRMT61B	55006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29092901	29092901	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TRMT61B	NM_017910	exon1	c.T243C	p.C81C	CGAAAGACATCCA	.	311.0	152.0	86.0	0.0	.	90
TSNAXIP1	55815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67859123	67859123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TSNAXIP1	NM_018430	exon7	c.C600A	p.D200E	CGCAGACCTGAAT	.	165.0	69.0	68.0	0.0	.	90
UBXN7	26043	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	196134222	196134222	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	UBXN7	NM_015562	exon2	c.116delA	p.N39fs	TTATTGTTGCACG	.	284.0	93.0	201.0	0.0	.	71
USP40	55230	ucsc.edu;bcgsc.ca	37	2	234450954	234450954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	USP40	NM_018218	exon8	c.T1058C	p.I353T	TGATCAATCTCTT	.	37.0	4.0	84.0	0.0	.	455
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22126725	22126725	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	VWA3A	NM_173615	exon9	c.G747A	p.L249L	CAACCTGCTACAA	.	173.0	79.0	98.0	0.0	.	1
WDR49	151790	ucsc.edu;bcgsc.ca	37	3	167223203	167223203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	WDR49	NM_178824	exon13	c.G1720A	p.V574I	GTCTGACACTGGA	.	23.0	4.0	122.0	0.0	.	155
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38378936	38378936	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_031951	exon6	c.A5258T	p.E1753V	GCCTCCTCTTCCT	.	359.0	121.0	329.0	0.0	.	.
WHSC1	7468	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1957858	1957858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	WHSC1	NM_133335	exon15	c.G2824T	p.G942W	ATGGAGGGGGACC	.	217.0	104.0	105.0	0.0	.	664
YIPF7	285525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44631480	44631480	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_182592	exon4	c.T438C	p.N146N	CGTTTCATTCATA	.	104.0	58.0	158.0	0.0	.	.
ZFP36	7538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39898413	39898413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFP36	NM_003407	exon2	c.G73T	p.V25L	GTGCCCGTGCCAT	.	72.0	18.0	24.0	0.0	.	227
ZFP92	139735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152685756	152685756	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFP92	NM_001136273	exon3	c.C231T	p.I77I	AGACATCCCCAGA	.	307.0	291.0	65.0	0.0	.	62
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68238928	68238928	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFYVE26	NM_015346	exon29	c.5321-1G>A	.	AGATACCTGGGAG	.	90.0	71.0	148.0	0.0	.	162
ZIK1	284307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58101688	58101688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZIK1	NM_001010879	exon4	c.G509T	p.W170L	GCAAATGGGAGGT	.	147.0	48.0	83.0	0.0	.	91
ZMAT4	79698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	40683185	40683185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZMAT4	NM_024645	exon2	c.C11T	p.S4F	ATATCGGAGGACT	.	87.0	37.0	35.0	0.0	.	92
ZNF462	58499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	109687219	109687219	+	Silent	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF462	NM_021224	exon3	c.T1026G	p.S342S	CATGTCTTACCCT	.	197.0	35.0	54.0	0.0	.	95
ZNF565	147929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	36673862	36673862	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF565	NM_001042474	exon5	c.G1006T	p.E336X	TACACTCGTAGGG	.	163.0	49.0	94.0	0.0	.	92
ZNF668	79759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31072640	31072640	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF668	NM_001172669	exon4	c.T1678A	p.S560T	GGTGTGAGCGCTC	.	147.0	28.0	51.0	0.0	.	585
ZNF831	128611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57766858	57766858	+	Silent	SNP	A	A	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF831	NM_178457	exon1	c.A784C	p.R262R	GATGTGAGGACCG	.	125.0	17.0	34.0	0.0	.	126
ADRA1D	146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	4202228	4202229	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	p.A554N	CAGGTGGCGCCCT	.	236.0	102.0	62.0	0.0	.	.
DENND6A	201627	hgsc.bcm.edu;broad.mit.edu	37	3	57678508	57678509	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	.	.	.	.	GCCTCACCTCCAC	.	48.0	29.0	16.0	0.0	.	.