Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABCA1 19 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 107595004 107595004 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ABCA1 NM_005502 exon12 c.G1360A p.D454N AGCCATCCAACTG . 105.0 24.0 158.0 0.0 . 1016 ABP1 26 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 150554178 150554178 + Missense_Mutation SNP T T C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ABP1 NM_001091 exon2 c.T620C p.V207A GCTATGTAGAAGG . 32.0 8.0 34.0 0.0 . 139 ADAMTS20 80070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 43769295 43769295 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ADAMTS20 NM_025003 exon36 c.G5333A p.C1778Y AAAGGACATTGAT . 83.0 23.0 94.0 0.0 . 795 AHSA2 130872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 61413791 61413791 + Missense_Mutation SNP T T A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . AHSA2 NM_152392 exon6 c.T284A p.L95Q CTACTCTAGGGCA . 84.0 22.0 118.0 0.0 . 289 AIM1 202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 106969168 106969168 + Missense_Mutation SNP T T C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . AIM1 NM_001624 exon2 c.T2861C p.L954P CAAAACTGAAGAA . 111.0 45.0 99.0 0.0 . 139 AKAP11 11215 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 42875560 42875560 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . AKAP11 NM_016248 exon8 c.C2678T p.S893L TGACATCATTGGA . 54.0 26.0 69.0 0.0 . 227 AKR7A3 22977 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 19612757 19612757 + Silent SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . AKR7A3 NM_012067 exon2 c.C324T p.D108D GAAGAGGTCCACT . 238.0 68.0 267.0 1.0 . 90 ALS2CR12 130540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 202211384 202211384 + Silent SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ALS2CR12 NM_001127391 exon5 c.G249T p.V83V AGGTGACACGTTG . 46.0 11.0 63.0 0.0 . 154 AMIGO2 347902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 47471425 47471425 + Missense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . AMIGO2 NM_181847 exon2 c.C1361T p.S454F TCAGCGGAGGCAT . 126.0 20.0 135.0 0.0 . 92 ANGPT4 51378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 869031 869031 + Missense_Mutation SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ANGPT4 NM_015985 exon3 c.T517C p.S173P TGGTGGACAGAAA . 22.0 10.0 34.0 0.0 . 92 ANLN 54443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 36435972 36435972 + Missense_Mutation SNP G G T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ANLN NM_018685 exon2 c.G116T p.R39L CTAAGCGAGCTAG . 163.0 33.0 165.0 0.0 . 517 ARHGEF28 64283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 73069858 73069858 + Silent SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . . NM_001080479 exon5 c.C654A p.V218V AGACGTCACAAAG . 65.0 17.0 81.0 0.0 . . ASB5 140458 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 177146466 177146466 + Missense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ASB5 NM_080874 exon2 c.C223T p.H75Y CTTCATGTAGTGG . 109.0 47.0 174.0 0.0 . 228 ASPM 259266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 197072361 197072361 + Missense_Mutation SNP T T G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ASPM NM_018136 exon18 c.A6020C p.Y2007S ATACTGTAAGCCC . 56.0 11.0 67.0 0.0 . 615 ATP10D 57205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 47525056 47525056 + Missense_Mutation SNP C C G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ATP10D NM_020453 exon4 c.C513G p.C171W CCGATGCTGGAAA . 77.0 20.0 136.0 0.0 . 93 ATP13A5 344905 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 193025125 193025125 + Silent SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ATP13A5 NM_198505 exon22 c.C2559T p.N853N ACAGTCGTTAGCT . 114.0 38.0 91.0 0.0 . 144 BAG6 7917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31608213 31608213 + Silent SNP T T C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . BAG6 NM_004639 exon22 c.A2997G p.E999E ATCCTGTTCATCC . 68.0 11.0 82.0 0.0 . 154 BNIPL 149428 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 151015463 151015463 + Silent SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . BNIPL NM_138278 exon5 c.C465A p.T155T GGGCACCAGTGAG . 105.0 22.0 178.0 0.0 . 227 BRD8 10902 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 137485482 137485482 + Missense_Mutation SNP T T C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . BRD8 NM_139199 exon23 c.A3125G p.E1042G TGAGCCTCCCCCT . 72.0 5.0 93.0 0.0 . 91 BTN2A1 11120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26468554 26468554 + Missense_Mutation SNP T T A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . BTN2A1 NM_007049 exon8 c.T1361A p.L454Q TCTTCCTGGACTA . 121.0 24.0 132.0 0.0 . 92 CAD 790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 27456323 27456323 + Silent SNP T T G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CAD NM_004341 exon20 c.T3135G p.A1045A CTCGGCTGAGAAC . 54.0 7.0 66.0 0.0 . 295 CASC5 57082 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 40916828 40916828 + Missense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CASC5 NM_170589 exon11 c.G4444A p.G1482R AAAAAAGGACAGA . 87.0 46.0 121.0 1.0 . 660 CASP4 837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 104819283 104819283 + Missense_Mutation SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CASP4 NM_001225 exon6 c.T902C p.I301T AAAGCAATGAAGT . 48.0 21.0 78.0 0.0 . 660 CASP5 838 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 104872821 104872821 + Silent SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CASP5 NM_001136112 exon5 c.G690T p.V230V CATCCCCACGATG . 93.0 26.0 121.0 0.0 . 661 CCDC168 643677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 103388308 103388308 + Silent SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . . NM_001146197 exon4 c.C14739T p.C4913C TCCATTGCATAGA . 22.0 8.0 40.0 0.0 . . CD36 948 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 80295781 80295781 + Missense_Mutation SNP C C G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CD36 NM_001127444 exon6 c.C724G p.H242D GAAAGTCACTGCG . 33.0 13.0 36.0 0.0 . 69 CDH7 1005 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 63547825 63547825 + Missense_Mutation SNP G G T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CDH7 NM_004361 exon12 c.G2053T p.D685Y CGGAGGGATGTGA . 162.0 29.0 186.0 1.0 . 94 CEACAM8 1088 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 43098936 43098936 + Nonsense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CEACAM8 NM_001816 exon1 c.G45A p.W15X CCCCTGCCAGGGG . 32.0 8.0 29.0 0.0 . 91 CELSR3 1951 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 48697293 48697293 + Silent SNP C C T rs200302496 TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CELSR3 NM_001407 exon1 c.G2775A p.V925V GTAGGTCACCTGG . 151.0 77.0 203.0 0.0 C|0.999;T|0.000 523 CHDH 55349 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 53851839 53851839 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CHDH NM_018397 exon9 c.G1750A p.V584I TGTAGACAGGGAC . 55.0 16.0 46.0 0.0 . 91 CHMP4C 92421 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 82670408 82670408 + Missense_Mutation SNP A A T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CHMP4C NM_152284 exon4 c.A515T p.E172V AATTGGAACAGGA . 94.0 18.0 72.0 0.0 . 92 CHRM2 1129 ucsc.edu;mdanderson.org 37 7 136701545 136701545 + RNA SNP G G T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CHRM2 . . . . GTTACGGTCCTAT . 64.0 29.0 85.0 0.0 . 94 CIDEA 1149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 12277129 12277129 + Missense_Mutation SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CIDEA NM_001279 exon5 c.C520A p.L174M AGTCTGCTGCGGT . 74.0 32.0 75.0 0.0 . 91 CLDN17 26285 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 31538834 31538834 + Silent SNP A A C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CLDN17 NM_012131 exon1 c.T102G p.A34A AACAAAAGCTGAT . 75.0 14.0 113.0 0.0 . 92 CLPTM1L 81037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 1330438 1330438 + Missense_Mutation SNP C C G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CLPTM1L NM_030782 exon9 c.G1037C p.S346T AGCAGGCTCGTCT . 166.0 9.0 221.0 0.0 . 153 CNGA3 1261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 99013018 99013018 + Missense_Mutation SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CNGA3 NM_001298 exon8 c.A1385G p.D462G TCCCAGACAAGCT . 106.0 17.0 102.0 0.0 . 96 CNOT1 23019 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 58589731 58589731 + Missense_Mutation SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CNOT1 NM_206999 exon20 c.G2561T p.R854L TATATTCGCTGGA . 26.0 13.0 31.0 0.0 . 95 CRB1 23418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 197404289 197404289 + Missense_Mutation SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CRB1 NM_201253 exon9 c.C3296A p.T1099K TAAGTACAATAGA . 55.0 14.0 66.0 0.0 . 161 CRTC2 200186 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 153920605 153920605 + Missense_Mutation SNP G G T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CRTC2 NM_181715 exon14 c.C2062A p.R688S CACTGCGGAATGA . 77.0 14.0 150.0 0.0 . 228 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 113326812 113326812 + Silent SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CSMD3 NM_198123 exon48 c.T7395C p.S2465S TCCAGTAGAATCT . 101.0 13.0 112.0 0.0 . 1132 CTIF 9811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 46287965 46287965 + Missense_Mutation SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CTIF NM_001142397 exon10 c.A1282G p.S428G GACCGCAGCTTCG . 68.0 29.0 64.0 0.0 . 156 CYP39A1 51302 hgsc.bcm.edu;broad.mit.edu 37 6 46609971 46609971 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . CYP39A1 NM_016593 exon2 c.G242A p.G81E TTAATTCCTTCTT . 48.0 4.0 79.0 0.0 . 91 DBC1 1620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 121930349 121930349 + Missense_Mutation SNP G G C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . DBC1 NM_014618 exon8 c.C1299G p.N433K GCTGTTGTTCCCG . 36.0 13.0 45.0 0.0 . 582 DBC1 1620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 121976358 121976358 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . DBC1 NM_014618 exon6 c.G761A p.G254E CCCTCCCCATTGC . 70.0 40.0 110.0 0.0 . 582 DCDC2 51473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 24278324 24278324 + Missense_Mutation SNP T T A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . DCDC2 NM_001195610 exon8 c.A875T p.K292I TTTTGTTTCAATT . 71.0 13.0 112.0 0.0 . 91 DCHS1 8642 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6644337 6644337 + Missense_Mutation SNP G G T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . DCHS1 NM_003737 exon21 c.C8570A p.P2857H AAATAGGGGGAAG . 44.0 17.0 35.0 0.0 . 73 DIDO1 11083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 61522428 61522428 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . DIDO1 NM_080797 exon15 c.G3425A p.S1142N CCACGGCTGCTGA . 76.0 16.0 114.0 0.0 . 96 DLG5 9231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 79569437 79569437 + Silent SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . DLG5 NM_004747 exon24 c.C4515T p.I1505I CTTTTTGATGAAG . 207.0 55.0 240.0 0.0 . 98 DNAH6 1768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 84775472 84775472 + Missense_Mutation SNP A A T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . DNAH6 NM_001370 exon8 c.A1247T p.Y416F CCACTTATGGAGA . 112.0 19.0 125.0 0.0 . 69 DNAJB6 10049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 157155965 157155965 + Splice_Site SNP G G T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . DNAJB6 NM_005494 exon3 c.175+1G>T . CGGATGGTGAGTG . 61.0 14.0 81.0 0.0 . 93 DNAJC22 79962 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 49743205 49743205 + Missense_Mutation SNP C C G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . DNAJC22 NM_024902 exon2 c.C550G p.R184G CTCTATCGTCTGG . 42.0 19.0 37.0 0.0 . 159 DNAJC6 9829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 65874377 65874377 + Missense_Mutation SNP A A T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . DNAJC6 NM_001256864 exon17 c.A2545T p.N849Y GGTTTCAATGCTC . 260.0 71.0 361.0 0.0 . 272 DNHD1 144132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6550235 6550235 + Missense_Mutation SNP T T A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . DNHD1 NM_144666 exon12 c.T2231A p.V744E ACTACGTGACGCT . 81.0 14.0 95.0 0.0 . 24 DSG2 1829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 29126582 29126582 + Missense_Mutation SNP G G C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . DSG2 NM_001943 exon15 c.G3233C p.G1078A TGTCTGGAGCTGG . 103.0 15.0 95.0 0.0 . 563 DYNC1H1 1778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 102508727 102508727 + Silent SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . DYNC1H1 NM_001376 exon68 c.G12282A p.V4094V GTGGGTGATGCTG . 57.0 14.0 50.0 0.0 . 98 EIF2B4 8890 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 27590910 27590910 + Silent SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . EIF2B4 NM_172195 exon6 c.G747T p.L249L ACGAAGCAGGGCA . 99.0 9.0 97.0 2.0 . 90 ERC1 23085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 1192448 1192448 + Missense_Mutation SNP C C G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ERC1 NM_178039 exon3 c.C788G p.T263R AGCTGACAGAGGA . 107.0 13.0 76.0 0.0 . 660 EYS 346007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 65622636 65622636 + Silent SNP T T A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . EYS NM_001142800 exon16 c.A2382T p.R794R CTCACATCTGAAA . 48.0 5.0 50.0 0.0 . 660 FAM171A1 221061 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 15290660 15290660 + Silent SNP C C A rs151163427 byfrequency;alternate_allele TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . FAM171A1 NM_001010924 exon5 c.G732T p.A244A CCGCCACGCCGCG . 81.0 26.0 113.0 0.0 C|1.000;T|0.000 138 FBXO30 84085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 146127013 146127013 + Missense_Mutation SNP C C G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . FBXO30 NM_032145 exon2 c.G529C p.E177Q AAGATTCTTCATC . 63.0 21.0 55.0 0.0 . 291 FBXO32 114907 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 124553194 124553194 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . FBXO32 NM_001242463 exon1 c.G61A p.G21S TCCAGCCGTCGGC . 95.0 29.0 78.0 0.0 . 660 FBXO43 286151 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 101153047 101153047 + Nonsense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . FBXO43 NM_001029860 exon2 c.C1435T p.Q479X TACACTGCAGTAC . 105.0 24.0 128.0 0.0 . 226 FLG 2312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152276077 152276077 + Missense_Mutation SNP G G T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . FLG NM_002016 exon3 c.C11285A p.P3762Q GACCCCGGGTGTC . 96.0 25.0 121.0 0.0 . 106 FLNC 2318 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 128485033 128485033 + Missense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . FLNC NM_001127487 exon21 c.G3514A p.E1172K GTCGGTGAGGCAG . 97.0 22.0 82.0 0.0 . 141 FOCAD 54914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 20944661 20944661 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . . NM_017794 exon31 c.C3443T p.S1148F TTCTGTCCCTCAT . 56.0 12.0 75.0 0.0 . . FREM2 341640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 39422758 39422758 + Silent SNP T T C rs112083916 byfrequency;alternate_allele TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . FREM2 NM_207361 exon8 c.T6330C p.L2110L AGCCCTTGGCGAG . 34.0 16.0 56.0 0.0 T|0.995;G|0.005 100 FUCA2 2519 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 143828467 143828467 + Missense_Mutation SNP A A T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . FUCA2 NM_032020 exon2 c.T319A p.F107I CTGTAAATAGTGG . 84.0 12.0 101.0 1.0 . 91 FUT1 2523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 49253562 49253562 + Missense_Mutation SNP G G C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . FUT1 NM_000148 exon4 c.C977G p.A326G AAGTTGGCCAGGT . 52.0 27.0 41.0 0.0 . 227 FUT9 10690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 96651384 96651384 + Missense_Mutation SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . FUT9 NM_006581 exon3 c.C353A p.T118K ATCTGACAAATTT . 96.0 17.0 106.0 0.0 . 95 FXYD3 5349 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 35614352 35614352 + Silent SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . FXYD3 NM_001136007 exon11 c.C426T p.A142A CTCAGCCCAAAGC . 57.0 10.0 82.0 0.0 . 90 GALNT13 114805 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 155098670 155098670 + Missense_Mutation SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . GALNT13 NM_052917 exon5 c.C439A p.L147I TATCTACTCTCAG . 81.0 31.0 95.0 0.0 . 95 GLIS3 169792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 4117860 4117860 + Missense_Mutation SNP C C G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . GLIS3 NM_001042413 exon4 c.G1618C p.G540R GGCAACCGGCCCA . 262.0 232.0 69.0 0.0 . 91 GNE 10020 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 36223377 36223377 + Silent SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . GNE NM_001128227 exon8 c.G1497A p.L499L TACTCCCAAAATT . 62.0 15.0 73.0 0.0 . 115 GPHN 10243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 67647566 67647566 + Missense_Mutation SNP G G C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . GPHN NM_020806 exon23 c.G2222C p.G741A CCAATGGATTGTT . 56.0 10.0 77.0 0.0 . 228 GPR125 166647 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 22425952 22425952 + Silent SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . GPR125 NM_145290 exon11 c.T1467C p.I489I ACTTGCAATGTCA . 172.0 100.0 182.0 0.0 . 91 GPR84 53831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 54757483 54757483 + Silent SNP G G C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . GPR84 NM_020370 exon2 c.C153G p.L51L GGTACGGAGCTTG . 66.0 23.0 68.0 0.0 . 523 GPRC5B 51704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 19883202 19883202 + Silent SNP C C T rs199935784 alternate_allele TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . GPRC5B NM_016235 exon2 c.G966A p.E322E CACGTCCTCCTCG . 42.0 19.0 62.0 0.0 C|0.999;G|0.000 523 GPRC6A 222545 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 117128020 117128020 + Missense_Mutation SNP A A T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . GPRC6A NM_148963 exon3 c.T848A p.V283D TCAAAAACATGGA . 47.0 12.0 45.0 0.0 . 96 GREB1L 80000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 19098035 19098035 + Missense_Mutation SNP T T A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . . NM_001142966 exon31 c.T5312A p.I1771N AATACATCTGTGC . 104.0 48.0 105.0 0.0 . . GRIK4 2900 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 120811107 120811107 + Missense_Mutation SNP G G T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . GRIK4 NM_014619 exon12 c.G1528T p.V510L GAGAAGGTGATTG . 55.0 15.0 75.0 0.0 . 92 HCFC2 29915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 104480666 104480666 + Missense_Mutation SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . HCFC2 NM_013320 exon8 c.A1105G p.T369A AAAGCCACTACCA . 116.0 28.0 91.0 0.0 . 92 HECTD2 143279 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 93252211 93252211 + Missense_Mutation SNP C C G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . HECTD2 NM_182765 exon13 c.C1402G p.L468V CTTCTTCTAATTC . 104.0 39.0 73.0 0.0 . 658 HIST1H4C 8364 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26104441 26104441 + Missense_Mutation SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . HIST1H4C NM_003542 exon1 c.A266G p.Y89C TAGTATATGCCCT . 83.0 16.0 79.0 0.0 . 68 IL17RD 54756 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 57139919 57139919 + Missense_Mutation SNP T T C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . IL17RD NM_017563 exon7 c.A713G p.H238R CCTTCGTGCTTGA . 93.0 34.0 134.0 1.0 . 500 IL1RL2 8808 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 102808473 102808473 + Missense_Mutation SNP T T A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . IL1RL2 NM_003854 exon4 c.T382A p.L128I CCAAATTTATCAG . 210.0 42.0 201.0 0.0 . 92 IQCB1 9657 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 3 121514404 121514404 + Nonsense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . IQCB1 NM_001023570 exon10 c.C886T p.Q296X CTGCTTGATGTAG . 212.0 14.0 231.0 0.0 . 90 IRF2BP2 359948 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 234743411 234743411 + Silent SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . IRF2BP2 NM_182972 exon2 c.C1236T p.T412T CGGTGTGGTCCGG . 105.0 19.0 118.0 0.0 . 90 ITPR2 3709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 26752255 26752255 + Silent SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ITPR2 NM_002223 exon30 c.G3825A p.R1275R GATGTGCCGCATG . 84.0 14.0 87.0 0.0 . 542 JPH3 57338 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 87723913 87723913 + Silent SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . JPH3 NM_020655 exon4 c.C1947A p.G649G CCGGGGCTTCGGG . 79.0 52.0 100.0 0.0 . 92 KCNQ2 3785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 62044867 62044867 + Missense_Mutation SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . KCNQ2 NM_172107 exon15 c.G1699T p.V567F CGATGACGTCCAT . 128.0 35.0 235.0 0.0 . 92 KLHL21 9903 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 6661948 6661948 + Missense_Mutation SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . KLHL21 NM_014851 exon1 c.G930T p.Q310H ACCCGTCTGCGGG . 113.0 31.0 135.0 0.0 . 514 KRT32 3882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39622138 39622138 + Missense_Mutation SNP T T C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . KRT32 NM_002278 exon3 c.A595G p.I199V CATTGATGTCGGC . 62.0 12.0 71.0 0.0 . 90 LACRT 90070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 55024698 55024698 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . LACRT NM_033277 exon5 c.G395A p.S132N AATAGACTGAATT . 128.0 13.0 133.0 0.0 . 90 LARP4 113251 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 50869325 50869325 + Missense_Mutation SNP G G T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . LARP4 NM_052879 exon16 c.G1853T p.S618I AGTTAAGTTATGC . 82.0 14.0 103.0 0.0 . 91 LCMT2 9836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 43622597 43622597 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . LCMT2 NM_014793 exon1 c.G91A p.G31R CGTACCCGCGCGC . 29.0 4.0 28.0 0.0 . 90 LHFPL3 375612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 104377307 104377307 + Missense_Mutation SNP G G C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . . NM_199000 exon2 c.G631C p.G211R GTGCTTGGTAATC . 65.0 16.0 73.0 0.0 . . LOC100653515 0 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 76887993 76887993 + Missense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . . NM_001243540 exon3 c.C593T p.A198V CTCGCTGCTGTCT . 115.0 71.0 148.0 0.0 . . LRFN5 145581 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 42356467 42356467 + Silent SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . LRFN5 NM_152447 exon3 c.C639T p.D213D ACCTGACCCTCTC . 57.0 28.0 91.0 0.0 . 97 LRPPRC 10128 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 44176800 44176800 + Splice_Site SNP T T G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . LRPPRC NM_133259 exon17 c.1678-2A>C . GTTATCTGGTAAG . 108.0 39.0 105.0 1.0 . 93 LRRC3B 116135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 26751375 26751375 + Missense_Mutation SNP T T A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . LRRC3B NM_052953 exon2 c.T212A p.L71Q TGTATCTGGACTC . 69.0 19.0 89.0 0.0 . 94 LRRC69 100130742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 92213018 92213018 + Nonsense_Mutation SNP A A T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . . NM_001129890 exon7 c.A931T p.K311X CCACCAAAGGTAA . 116.0 46.0 125.0 0.0 . . LRRCC1 85444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 86041583 86041583 + Missense_Mutation SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . LRRCC1 NM_033402 exon10 c.A1595G p.E532G AAATGGAGAGACA . 289.0 105.0 291.0 0.0 . 90 LRRK2 120892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 40740721 40740721 + Missense_Mutation SNP A A T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . LRRK2 NM_198578 exon42 c.A6276T p.L2092F AAAATTACCTGGT . 42.0 17.0 43.0 0.0 . 533 MACROD2 140733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 13983050 13983050 + Missense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . MACROD2 NM_080676 exon2 c.G163A p.E55K AATGATGGTAAGT . 85.0 45.0 97.0 0.0 . 22 MARCH6 10299 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 10415698 10415698 + Missense_Mutation SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . MARCH6 NM_005885 exon21 c.A2065G p.I689V CTAACCATAAGGG . 93.0 40.0 95.0 1.0 . 501 MEI1 150365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 42177763 42177763 + Missense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . MEI1 NM_152513 exon24 c.G3001A p.A1001T GCAAAGGCAGATT . 132.0 77.0 109.0 0.0 . 70 MFSD12 126321 broad.mit.edu;bcgsc.ca 37 19 3544813 3544813 + Missense_Mutation SNP G G C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . . NM_001042680 exon9 c.C1414G p.R472G AGCGTCGCAGGCG . 24.0 4.0 24.0 0.0 . . MSH5 4439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31726650 31726650 + Missense_Mutation SNP C C G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . MSH5 NM_025259 exon15 c.C1375G p.L459V ATCCCTCTGGTGA . 93.0 22.0 128.0 0.0 . 661 MTO1 25821 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 74202034 74202034 + Missense_Mutation SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . MTO1 NM_001123226 exon11 c.A1835G p.Y612C AGAAGTATACTAA . 68.0 21.0 58.0 0.0 . 96 MUC17 140453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 100677761 100677761 + Missense_Mutation SNP T T A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . MUC17 NM_001040105 exon3 c.T3064A p.S1022T GCCAGTTCACCTC . 197.0 34.0 205.0 0.0 . 95 MVK 4598 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 110032905 110032905 + Missense_Mutation SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . MVK NM_000431 exon10 c.C958A p.Q320K CTCTGCCAGGTGA . 51.0 7.0 73.0 0.0 . 115 MYO3A 53904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 26455035 26455035 + Silent SNP C C G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . MYO3A NM_017433 exon27 c.C3039G p.R1013R GCCCCGCATGAGC . 46.0 19.0 81.0 0.0 . 1007 NKAPL 222698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 28227197 28227197 + Silent SNP T T C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . NKAPL NM_001007531 exon1 c.T48C p.S16S GGGCTCTCGGAGA . 98.0 19.0 91.0 0.0 . 70 NLRP3 114548 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 247587376 247587376 + Missense_Mutation SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . NLRP3 NM_183395 exon3 c.C631A p.P211T TTTGACCCCGATG . 130.0 24.0 175.0 0.0 . 674 NOTCH3 4854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 15298796 15298796 + Missense_Mutation SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . NOTCH3 NM_000435 exon10 c.G1502T p.G501V GTGGAGCCGCTGA . 82.0 38.0 98.0 0.0 . 855 NT5DC1 221294 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 116439079 116439079 + Missense_Mutation SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . NT5DC1 NM_152729 exon6 c.A500G p.Q167R CTATACAACACAA . 55.0 10.0 83.0 1.0 . 226 OBSCN 84033 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 228474027 228474027 + Missense_Mutation SNP G G T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . OBSCN NM_001271223 exon39 c.G10540T p.A3514S CAGCGGGCCTCGG . 46.0 15.0 65.0 0.0 . 403 OR4P4 81300 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 55405983 55405983 + Silent SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . OR4P4 NM_001004124 exon1 c.C150A p.T50T GTGCACCCAGCTC . 68.0 24.0 66.0 0.0 . 68 OR7A17 26333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 14991644 14991644 + Missense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . OR7A17 NM_030901 exon1 c.C524T p.P175L AAGTGGGGGATTT . 60.0 25.0 68.0 0.0 . 68 PAMR1 25891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 35513688 35513688 + Missense_Mutation SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . PAMR1 NM_001001991 exon3 c.G284T p.R95L CCATTTCGGCAGC . 74.0 25.0 68.0 0.0 . 70 PCDHA11 56138 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140250482 140250482 + Silent SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . PCDHA11 NM_018902 exon1 c.G1794A p.A598A GGATGCGGACTCA . 23.0 8.0 46.0 1.0 . 67 PCDHGB7 56099 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140798922 140798922 + Missense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . PCDHGB7 NM_018927 exon1 c.G1496A p.R499Q AGTCACGAACGCT . 67.0 15.0 97.0 1.0 . 29 PDE9A 5152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 44108091 44108091 + Missense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . PDE9A NM_001001570 exon3 c.G205A p.A69T ATGCCCGCGAATT . 32.0 12.0 55.0 0.0 . 92 PDZD3 79849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 119059407 119059407 + Missense_Mutation SNP G G C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . PDZD3 NM_001168468 exon9 c.G1118C p.G373A CCCGGGGCAGCAG . 102.0 44.0 178.0 0.0 . 153 PNPLA8 50640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 108113028 108113028 + Silent SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . PNPLA8 NM_001256008 exon10 c.T2166C p.S722S ATTTCGACTTTCA . 97.0 15.0 84.0 0.0 . 135 PPP2R3A 5523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 135721147 135721147 + Silent SNP T T C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . PPP2R3A NM_002718 exon2 c.T807C p.D269D TAATGATACAATT . 120.0 25.0 118.0 0.0 . 662 RANBP17 64901 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 170668124 170668124 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . RANBP17 NM_022897 exon23 c.C2615T p.S872L TGCTGTCAGTGTC . 34.0 7.0 46.0 0.0 . 524 RANBP6 26953 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 6015579 6015579 + Missense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . RANBP6 NM_001243203 exon1 c.C29T p.P10L GTCGCCGGCACCC . 61.0 56.0 14.0 0.0 . 229 RHAG 6005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 49583450 49583450 + Missense_Mutation SNP G G T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . RHAG NM_000324 exon4 c.C527A p.A176D CCAAAGGCATGGA . 108.0 20.0 109.0 0.0 . 154 RNF150 57484 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 141888999 141888999 + Silent SNP A A G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . RNF150 NM_020724 exon2 c.T513C p.I171I CTCAGGAATCATT . 49.0 25.0 88.0 0.0 . 227 SCIN 85477 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 12666242 12666242 + Missense_Mutation SNP A A C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SCIN NM_001112706 exon8 c.A1015C p.I339L ACACCAATCTTCA . 78.0 51.0 82.0 0.0 . 24 SCN11A 11280 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 38938564 38938564 + Silent SNP A A T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SCN11A NM_014139 exon14 c.T2175A p.R725R GAAGCTACGGCCA . 94.0 46.0 194.0 0.0 . 99 SCN8A 6334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 52056683 52056683 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SCN8A NM_014191 exon2 c.C82T p.R28C GAGAGGCGCATTG . 80.0 20.0 94.0 0.0 . 29 SCUBE1 80274 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 22 43608598 43608598 + Missense_Mutation SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SCUBE1 NM_173050 exon17 c.G2054T p.G685V CACTGGCCTGAAA . 37.0 13.0 44.0 0.0 . 93 SERPINB8 5271 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 61645627 61645627 + Missense_Mutation SNP T T C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SERPINB8 NM_001031848 exon2 c.T85C p.F29L AACGTATTCTTCT . 66.0 6.0 58.0 0.0 . 226 SIK1 150094 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 21 44845966 44845966 + Silent SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SIK1 NM_173354 exon2 c.G93A p.R31R CAGGGTCCGCTCG . 45.0 15.0 67.0 0.0 . 346 SIN3A 25942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 75705145 75705145 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SIN3A NM_001145358 exon5 c.G715A p.A239T GCTGGGCAGGAGC . 87.0 44.0 82.0 0.0 . 230 SLC17A1 6568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 25799088 25799088 + Silent SNP G G C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SLC17A1 NM_005074 exon12 c.C1329G p.G443G AATTAGGCCAGTC . 36.0 13.0 61.0 0.0 . 94 SLC2A7 155184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 9078428 9078428 + Missense_Mutation SNP G G C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SLC2A7 NM_207420 exon5 c.C443G p.S148C CTGTAGGAGATGC . 84.0 14.0 87.0 0.0 . 514 SLC6A11 6538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 10970961 10970961 + Missense_Mutation SNP G G A rs202136147 TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SLC6A11 NM_014229 exon10 c.G1307A p.R436Q ACCGGCGGGAGCT . 113.0 35.0 107.0 0.0 G|0.999;A|0.000 132 SLC6A5 9152 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 20622906 20622906 + Missense_Mutation SNP T T A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SLC6A5 NM_004211 exon2 c.T235A p.S79T GTGGGGTCTTGCA . 15.0 7.0 25.0 0.0 . 156 SMURF1 57154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 98645348 98645348 + Missense_Mutation SNP C C A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SMURF1 NM_020429 exon11 c.G1189T p.G397C AATGACCAGCTTG . 77.0 20.0 71.0 0.0 . 661 SNTB1 6641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 121706115 121706115 + Missense_Mutation SNP T T C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SNTB1 NM_021021 exon2 c.A605G p.K202R CCTTTCTTCACAT . 69.0 17.0 85.0 0.0 . 228 SPEN 23013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 16256548 16256548 + Missense_Mutation SNP A A C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SPEN NM_015001 exon11 c.A3813C p.E1271D CCATGAAGATGAG . 81.0 22.0 126.0 0.0 . 298 SPTBN2 6712 ucsc.edu;bcgsc.ca 37 11 66472170 66472170 + Silent SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SPTBN2 NM_006946 exon14 c.C2577T p.S859S GGCCTCGCTGAGC . 42.0 4.0 62.0 0.0 . 155 SRSF8 10929 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 94801037 94801037 + RNA SNP T T C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . . . . . . CTCCACTAGCTCT . 57.0 38.0 65.0 0.0 . . SSR3 6747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 156271447 156271447 + Missense_Mutation SNP T T G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SSR3 NM_007107 exon2 c.A257C p.H86P TACTTGTGCTTGA . 99.0 21.0 135.0 0.0 . 90 SYNE2 23224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 64491167 64491167 + Missense_Mutation SNP C C G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SYNE2 NM_182914 exon39 c.C5830G p.Q1944E TTGCAGCAGCTAC . 44.0 9.0 30.0 0.0 . 164 SZT2 23334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 43896050 43896050 + Missense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . SZT2 NM_015284 exon30 c.G4299A p.M1433I GCTTATGGGAGAA . 47.0 16.0 72.0 0.0 . 144 TMEM132D 121256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 130015669 130015669 + Missense_Mutation SNP A A T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . TMEM132D NM_133448 exon3 c.T1050A p.D350E AGTATAATCCGTG . 48.0 13.0 58.0 0.0 . 106 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7578461 7578461 + Missense_Mutation SNP C C A rs121912654 TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e TP53,head_neck,carcinoma,0 TP53 NM_000546 exon5 c.G469T p.V157F CGCGGACGCGGGT . 63.0 39.0 75.0 0.0 . 70225 TP53BP2 7159 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 223983912 223983912 + Missense_Mutation SNP G G C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . TP53BP2 NM_001031685 exon13 c.C2329G p.P777A TGGATGGGTATGA . 69.0 6.0 99.0 0.0 . 229 TP63 8626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 189590736 189590736 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . TP63 NM_001114979 exon10 c.C1301T p.T434M TTGAAACGTACAG . 297.0 117.0 288.0 0.0 . 421 TSC2 7249 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 2138085 2138088 + Frame_Shift_Del DEL TCGT TCGT - novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 TCGT TCGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . TSC2 NM_000548 exon40 c.5105_5108del p.1702_1703del CCAAGATCGTGTC . 34.0 12.0 54.0 0.0 . 1908 TTC3 7267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 38461097 38461097 + Splice_Site SNP A A T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . TTC3 NM_001001894 exon5 c.339-2A>T . TCTTTAAGCAATT . 67.0 22.0 103.0 0.0 . 590 TTF1 7270 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 135276847 135276847 + Silent SNP C C T rs61741946 TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . TTF1 NM_007344 exon2 c.G1362A p.A454A CCTTGGCGCCTCT . 86.0 50.0 112.0 0.0 C|0.987;T|0.013 94 TTN 7273 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 179604561 179604561 + Frame_Shift_Del DEL C C - novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . TTN NM_001267550 exon48 c.13399delG p.A4467fs GGTTAGCCATTTG . 108.0 25.0 123.0 0.0 . 636 TYMP 1890 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 50967719 50967743 + Frame_Shift_Del DEL GTCTCCTCCAGATCCATGCCCCGAA GTCTCCTCCAGATCCATGCCCCGAA - novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 GTCTCCTCCAGATCCATGCCCCGAA GTCTCCTCCAGATCCATGCCCCGAA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . TYMP NM_001257989 exon3 c.239_263del p.80_88del ACCGAGGTCTCCT . 49.0 20.0 69.0 0.0 . 23 UPRT 139596 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 74494412 74494412 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . UPRT NM_145052 exon1 c.C323T p.A108V TCGGGGCGCAGCT . 128.0 88.0 98.0 0.0 . 130 WDR60 55112 broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 158734669 158734669 + Silent SNP G G C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . WDR60 NM_018051 exon24 c.G2832C p.P944P GTTTCCGCTCCTG . 28.0 6.0 35.0 0.0 . 92 XDH 7498 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 31596741 31596741 + Missense_Mutation SNP G G T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . XDH NM_000379 exon16 c.C1684A p.Q562K TCACTTGGAAGAG . 46.0 9.0 57.0 0.0 . 158 XPNPEP3 63929 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 41318489 41318489 + Missense_Mutation SNP A A C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . XPNPEP3 NM_022098 exon8 c.A1208C p.K403T TCATGAAGAACAT . 71.0 6.0 53.0 0.0 . 68 ZC3H7A 29066 hgsc.bcm.edu;broad.mit.edu 37 16 11876180 11876180 + Missense_Mutation SNP T T C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ZC3H7A NM_014153 exon2 c.A31G p.R11G GCTGCCTTTTTCT . 76.0 4.0 104.0 0.0 . 94 ZDHHC2 51201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 17072756 17072756 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . . NM_016353 exon11 c.C961T p.H321Y GAAAACCATCAGT . 59.0 30.0 86.0 0.0 . . ZFP36L2 678 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 43452474 43452474 + Missense_Mutation SNP C C G novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ZFP36L2 NM_006887 exon2 c.G469C p.E157Q ACAGCTCGGTCTT . 30.0 7.0 45.0 0.0 . 226 ZNF256 10172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58453067 58453067 + Missense_Mutation SNP T T C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ZNF256 NM_005773 exon3 c.A1109G p.Q370R ACTCTCTGGTGTG . 42.0 8.0 60.0 0.0 . 92 ZNF430 80264 broad.mit.edu;mdanderson.org 37 19 21216933 21216933 + Missense_Mutation SNP G G C novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ZNF430 NM_025189 exon4 c.G265C p.E89Q TGTCTAGAGCAAG . 33.0 6.0 41.0 0.0 . 516 ZNF510 22869 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 99525914 99525914 + Missense_Mutation SNP C C T novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ZNF510 NM_014930 exon4 c.G130A p.A44T CTGATGCCTGTAA . 54.0 27.0 66.0 0.0 . 90 ZNF586 54807 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58290133 58290133 + Missense_Mutation SNP G G A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ZNF586 NM_017652 exon3 c.G178A p.G60R CATGGAGGGGAAG . 38.0 7.0 28.0 0.0 . 92 ZNF716 441234 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 57529255 57529255 + Missense_Mutation SNP T T A novel TCGA-CC-A7IJ-01A-11D-A33Q-10 TCGA-CC-A7IJ-10A-01D-A33Q-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 4daabef7-38d1-4a34-882c-1a78de6fe252 0d941ca8-539e-4a09-827d-7089b997f42e . ZNF716 NM_001159279 exon4 c.T1088A p.F363Y TTACCTTCTCCTC . 99.0 35.0 116.0 1.0 . 24