Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48311639	48311639	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ABCA13	NM_152701	exon17	c.A2376G	p.K792K	TCAGAAACTCTTG	.	81.0	11.0	159.0	0.0	.	521
ABCC6	368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	16244451	16244451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ABCC6	NM_001171	exon30	c.G4387T	p.V1463L	CCATCACGGAGCG	.	57.0	24.0	89.0	0.0	.	93
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105416248	105416248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	AHNAK2	NM_138420	exon7	c.A5540G	p.D1847G	GACACATCCACCG	.	194.0	44.0	335.0	0.0	.	47
AKAP13	11214	ucsc.edu;bcgsc.ca	37	15	86236558	86236558	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	AKAP13	NM_006738	exon17	c.A5352G	p.K1784K	TTCTAAAGACAAG	.	47.0	4.0	108.0	0.0	.	258
ALS2	57679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202633600	202633600	+	Silent	SNP	T	T	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ALS2	NM_001135745	exon2	c.A9C	p.S3S	CTTCTTTGAGTCC	.	72.0	22.0	140.0	0.0	.	275
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27352965	27352965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ANKRD26	NM_014915	exon12	c.G1315T	p.G439W	CAGCCCCAGCTAA	.	122.0	45.0	211.0	0.0	.	138
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79503384	79503384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ANXA3	NM_005139	exon5	c.G252A	p.M84I	TCTCATGGTGGCC	.	157.0	62.0	304.0	0.0	.	90
ARHGAP30	257106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161017651	161017651	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ARHGAP30	NM_001025598	exon12	c.T3160A	p.S1054T	CTTCAGATGGGAG	.	79.0	35.0	114.0	0.0	.	25
ARHGEF28	64283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	73168941	73168941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001080479	exon22	c.C2684T	p.P895L	TTTTCCCCTGTTT	.	158.0	50.0	172.0	0.0	.	.
ATM	472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	108172499	108172499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ATM	NM_000051	exon35	c.A5302G	p.R1768G	CCTTTTAGAACAT	.	113.0	15.0	180.0	0.0	.	3419
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50346419	50346419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ATP9A	NM_006045	exon2	c.A167T	p.N56I	ATGACATTCCGAG	.	74.0	23.0	140.0	0.0	.	94
BAHCC1	57597	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79409035	79409035	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	BAHCC1	.	.	.	.	CCTCGTGGGCAAA	.	46.0	7.0	57.0	0.0	.	23
C20orf196	149840	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	5844104	5844104	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	C20orf196	NM_152504	exon3	c.C613G	p.L205V	AAAGACCTGTAAC	.	64.0	7.0	115.0	0.0	.	90
CACNB4	785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152732958	152732958	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CACNB4	NM_001145798	exon5	c.G503C	p.R168T	CGTCCTCTTTTTT	.	63.0	28.0	279.0	0.0	.	24
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	103381888	103381888	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001146197	exon4	c.G21159A	p.K7053K	TGAAATCTTTGCC	.	119.0	9.0	190.0	0.0	.	.
CEP97	79598	hgsc.bcm.edu;bcgsc.ca	37	3	101481359	101481360	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CEP97	NM_024548	exon10	c.1848_1849insA	p.I616fs	ACGTATTAAAAAA	.	281.0	51.0	511.0	0.0	.	70
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	71043634	71043634	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CLEC4F	NM_173535	exon4	c.G879C	p.Q293H	TGTGTTCTGCAAA	.	297.0	19.0	428.0	0.0	.	95
CNPY2	10330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56708752	56708752	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CNPY2	NM_014255	exon4	c.89-2A>G	.	GCATGCTGGTGGA	.	82.0	32.0	129.0	0.0	.	68
CPAMD8	27151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17038989	17038989	+	Missense_Mutation	SNP	G	G	A	rs200032712		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CPAMD8	NM_015692	exon25	c.C3341T	p.P1114L	GGCCTCGGGAGGG	.	59.0	23.0	46.0	0.0	G|0.999;A|0.001	141
CREB5	9586	ucsc.edu;bcgsc.ca	37	7	28547332	28547332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CREB5	NM_182898	exon4	c.C268A	p.Q90K	AAGGCTCAGGAAG	.	72.0	10.0	112.0	1.0	.	92
CTNNA2	1496	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	80101327	80101327	+	Silent	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	CTNNA2	NM_001164883	exon6	c.A711G	p.R237R	TACGAGAGCCAAC	.	55.0	7.0	109.0	0.0	.	368
DAPK1	1612	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90272970	90272970	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DAPK1	NM_004938	exon18	c.G1851A	p.A617A	CCTTGCGGCCAAC	.	16.0	5.0	64.0	0.0	.	359
DHRS4L1	728635	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	24517998	24517998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001082488	exon8	c.T653C	p.I218T	GACTTATCAAGAC	.	502.0	180.0	818.0	2.0	.	.
DLK2	65989	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43418506	43418506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DLK2	NM_023932	exon6	c.T923C	p.V308A	AGGGCCACCAAGC	.	114.0	31.0	135.0	1.0	.	68
DMD	1756	broad.mit.edu;bcgsc.ca	37	X	31525446	31525446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DMD	NM_004006	exon56	c.A8342G	p.N2781S	TTCATGTTATCCA	.	168.0	7.0	287.0	1.0	.	265
DNAJC1	64215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	22048461	22048461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DNAJC1	NM_022365	exon11	c.A1234T	p.T412S	GCTGGGTGATCAT	.	168.0	53.0	312.0	0.0	.	226
DPP3	10072	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	66249912	66249912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DPP3	NM_001256670	exon2	c.G241T	p.A81S	GCCCTGGCTGAAG	.	44.0	9.0	36.0	0.0	.	46
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102466376	102466376	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	DYNC1H1	NM_001376	exon17	c.G3855A	p.G1285G	TGAGGGGAAGTTT	.	65.0	25.0	116.0	0.0	.	98
EIF2AK4	440275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40268641	40268641	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EIF2AK4	NM_001013703	exon12	c.C1845T	p.C615C	CTGCTGCTACGCA	.	62.0	34.0	87.0	0.0	.	757
EMP2	2013	ucsc.edu;bcgsc.ca	37	16	10626944	10626944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EMP2	NM_001424	exon5	c.T322C	p.C108R	TGACACACAGACC	.	39.0	4.0	34.0	0.0	.	90
EWSR1	2130	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	29694814	29694814	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	EWSR1	NM_013986	exon15	c.G1524A	p.R508R	ACCCCGGGGTTCC	.	61.0	23.0	73.0	0.0	.	3375
FAM162B	221303	broad.mit.edu;bcgsc.ca	37	6	117083206	117083206	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FAM162B	NM_001085480	exon3	c.A324G	p.K108K	ACAAGCTTTCACT	.	129.0	6.0	355.0	0.0	.	22
FANCA	2175	ucsc.edu;bcgsc.ca	37	16	89813300	89813300	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FANCA	NM_000135	exon35	c.3349-2A>G	.	TTTCTCTGCAAAA	.	45.0	4.0	38.0	0.0	.	1130
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242343251	242343251	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FARP2	NM_014808	exon3	c.C192T	p.C64C	TAAATGCGATGGC	.	100.0	20.0	192.0	0.0	.	93
FAT3	120114	broad.mit.edu;bcgsc.ca	37	11	92534438	92534438	+	Silent	SNP	G	G	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FAT3	NM_001008781	exon9	c.G8259C	p.G2753G	CAAAGGGGGCATA	.	98.0	6.0	107.0	0.0	.	73
FCAR	2204	broad.mit.edu;bcgsc.ca	37	19	55386823	55386823	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FCAR	NM_002000	exon2	c.70+2T>C	.	GGAAGGTAAGTGT	.	112.0	54.0	170.0	1.0	.	92
FRS3	10817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41738386	41738386	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FRS3	NM_006653	exon7	c.C1450G	p.R484G	TGTGCCGGGTTTT	.	82.0	29.0	151.0	0.0	.	92
FUT3	2525	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5844841	5844841	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	FUT3	NM_001097640	exon3	c.C10T	p.L4L	CACCCAGGGGATC	.	102.0	13.0	173.0	0.0	.	90
GAA	2548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78091993	78091993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GAA	NM_001079803	exon19	c.G2483T	p.G828V	TCCAGGGCCCTGG	.	70.0	27.0	72.0	0.0	.	91
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120602144	120602144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GCN1L1	NM_006836	exon18	c.A1844G	p.H615R	ACCTTGTGAGAAC	.	85.0	32.0	96.0	0.0	.	94
GHR	2690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	42713546	42713546	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GHR	NM_001242399	exon8	c.G821A	p.W274X	TTCCATGGCTCTT	.	158.0	49.0	425.0	0.0	.	659
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54757477	54757477	+	Silent	SNP	G	G	A	rs143236488		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GPR84	NM_020370	exon2	c.C159T	p.T53T	GAATCGGGTACGG	.	137.0	53.0	158.0	0.0	G|0.999;A|0.000	523
GTF2E1	2960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120469757	120469757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GTF2E1	NM_005513	exon2	c.G358A	p.D120N	GAGAGAGATTCGA	.	116.0	61.0	155.0	0.0	.	91
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27517278	27517278	+	Missense_Mutation	SNP	G	G	T	rs140459536	alternate_allele	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	GTF3C1	NM_001520	exon10	c.C1712A	p.A571E	CTGTCCGCACAGT	.	105.0	41.0	148.0	0.0	G|1.000;A|0.000	94
HELZ2	85441	ucsc.edu;bcgsc.ca	37	20	62191577	62191577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001037335	exon18	c.T7604C	p.L2535P	CGCCGAAGGGCCT	.	33.0	4.0	35.0	0.0	.	.
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63991120	63991120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HERC1	NM_003922	exon26	c.A4712G	p.N1571S	GAGGAGTTGCATA	.	93.0	17.0	158.0	0.0	.	666
HIST1H4K	8362	broad.mit.edu;mdanderson.org	37	6	27799305	27799305	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HIST1H4K	NM_003541	exon1	c.A1C	p.M1L	CAGACATGACGAG	.	138.0	37.0	223.0	1.0	.	90
HYDIN	54768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70891690	70891690	+	Silent	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	HYDIN	NM_001270974	exon72	c.C12213A	p.V4071V	GAAAGGGACTGTG	.	127.0	40.0	289.0	0.0	.	92
IGLL5	100423062	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	23237760	23237760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001178126	exon3	c.C531A	p.S177R	GGCCAGCAGCTAC	.	208.0	77.0	313.0	2.0	.	.
KCNJ6	3763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	39086700	39086700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	KCNJ6	NM_002240	exon3	c.C760T	p.P254S	TCAACGGGATGAA	.	179.0	33.0	321.0	0.0	.	91
LINGO2	158038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27949442	27949442	+	Missense_Mutation	SNP	G	G	T	rs199551773	alternate_allele	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	LINGO2	NM_001258282	exon7	c.C1228A	p.P410T	TTTTGGGTTTTTT	.	108.0	16.0	192.0	0.0	G|0.999;A|0.001	516
LOC100506713	0	ucsc.edu;bcgsc.ca	37	17	6905848	6905848	+	RNA	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	.	.	.	.	CACGCCTGTAATC	.	35.0	4.0	84.0	0.0	.	.
MAP2K6	5608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67521065	67521065	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MAP2K6	NM_002758	exon9	c.C687T	p.L229L	AGAGCTCAACCAG	.	150.0	86.0	150.0	0.0	.	1404
MKI67	4288	ucsc.edu;bcgsc.ca	37	10	129913987	129913987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MKI67	NM_002417	exon7	c.A685G	p.N229D	TGCTATTGTCAAG	.	40.0	4.0	77.0	0.0	.	519
MKNK1	8569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47028365	47028365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MKNK1	NM_003684	exon11	c.G919A	p.A307T	AGTCGGCCCCGCA	.	59.0	11.0	77.0	0.0	.	978
MLXIP	22877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	122623457	122623457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MLXIP	NM_014938	exon15	c.G2480A	p.R827Q	AAACCCGGACCTT	.	210.0	12.0	389.0	0.0	.	92
MPO	4353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56355395	56355395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MPO	NM_000250	exon7	c.C997T	p.L333F	AAGTGAGCGCGTT	.	54.0	23.0	61.0	0.0	.	156
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60743465	60743465	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MRC2	NM_006039	exon3	c.C531T	p.T177T	CTACACCATCCAG	.	50.0	33.0	76.0	0.0	.	117
MRPS12	6183	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39421984	39421984	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MRPS12	NM_033362	exon2	c.49+1G>A	.	CTTGTGGTAAGTG	.	67.0	6.0	127.0	0.0	.	90
MTF2	22823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	93599749	93599749	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MTF2	NM_007358	exon14	c.1421delA	p.Y474fs	GGCATTATGGGTA	.	121.0	50.0	190.0	0.0	.	92
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76858899	76858899	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MYO7A	NM_001127179	exon4	c.C188G	p.S63W	CCACGTCGGTCCA	.	54.0	24.0	69.0	0.0	.	138
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	1946920	1946920	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	MYT1L	NM_015025	exon9	c.C339T	p.D113D	ATCATTGTCCTCG	.	509.0	26.0	555.0	0.0	.	95
NAAA	27163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76861223	76861223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NAAA	NM_014435	exon2	c.G302T	p.G101V	CACATGCCGCGGA	.	57.0	22.0	121.0	0.0	.	91
NEO1	4756	ucsc.edu;bcgsc.ca	37	15	73541532	73541532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NEO1	NM_001172623	exon10	c.G1738T	p.G580W	GAAAAGGGGACTG	.	44.0	4.0	88.0	0.0	.	116
NINL	22981	ucsc.edu;bcgsc.ca	37	20	25485596	25485596	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NINL	NM_025176	exon6	c.C636T	p.S212S	TCCGCTGCTGCCC	.	46.0	4.0	96.0	0.0	.	94
NPAS2	4862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101580593	101580593	+	Silent	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NPAS2	NM_002518	exon8	c.T672C	p.V224V	GGAGGTTTGCTTC	.	88.0	31.0	138.0	0.0	.	94
NRK	203447	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105152837	105152837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	NRK	NM_198465	exon13	c.C1204A	p.Q402K	GAGCCACAGGTCC	.	72.0	8.0	127.0	2.0	.	630
OR2H2	7932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	29556102	29556102	+	Silent	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	OR2H2	NM_007160	exon1	c.C381A	p.P127P	CCAGCCCCTCCAC	.	122.0	40.0	180.0	0.0	.	22
OR51A4	401666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4968139	4968139	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	OR51A4	NM_001005329	exon1	c.192delT	p.F64fs	GGAAAGAAAATAG	.	599.0	135.0	1236.0	0.0	.	71
OR51E2	81285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4703712	4703712	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	OR51E2	NM_030774	exon2	c.T230A	p.M77K	TTAGGCATGGTGG	.	34.0	15.0	94.0	0.0	.	502
PACS1	55690	broad.mit.edu;bcgsc.ca	37	11	65988182	65988182	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PACS1	NM_018026	exon9	c.G1119A	p.L373L	CAGTCTGGAGATG	.	137.0	6.0	171.0	0.0	.	74
PCBP1	5093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70315174	70315174	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PCBP1	NM_006196	exon1	c.T299A	p.L100Q	TCACCCTGAGGCT	.	30.0	10.0	57.0	0.0	.	226
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140249239	140249239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PCDHA11	NM_018902	exon1	c.C551T	p.T184I	CACCAACAAATGG	.	58.0	9.0	58.0	0.0	.	67
PGK2	5232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49753721	49753721	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PGK2	NM_138733	exon1	c.A1180T	p.T394S	CTCCAGTGCTGAC	.	109.0	54.0	153.0	0.0	.	91
PLA2G7	7941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46672428	46672428	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PLA2G7	NM_005084	exon12	c.C1195G	p.H399D	CTTTATGAAGTCC	.	275.0	143.0	385.0	0.0	.	90
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9401994	9401994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PLCB4	NM_001172646	exon26	c.G2205T	p.E735D	CGTAGAGGTGGAT	.	116.0	48.0	168.0	0.0	.	274
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	129275500	129275500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PLXND1	NM_015103	exon35	c.T5621C	p.M1874T	TCTGCCATGGCCA	.	148.0	55.0	179.0	0.0	.	90
PPP1R21	129285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	48718183	48718183	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_152994	exon15	c.G1473A	p.L491L	CAATTTGGACTAC	.	134.0	9.0	218.0	0.0	.	.
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	139193051	139193051	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PSD2	NM_032289	exon3	c.G529T	p.E177X	AGCTTCGAGGCCC	.	96.0	50.0	144.0	0.0	.	91
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70960239	70960239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	PTPRB	NM_001109754	exon15	c.G3880C	p.E1294Q	GGGCTTCCTTGCT	.	349.0	142.0	543.0	0.0	.	226
RAB40B	10966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80615904	80615904	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RAB40B	NM_006822	exon6	c.672delC	p.S224fs	CGAGAAGGACTTG	.	164.0	23.0	191.0	0.0	.	227
RNF10	9921	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	121013648	121013648	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RNF10	NM_014868	exon16	c.A2254T	p.N752Y	AGTGATAATTCAG	.	115.0	13.0	187.0	0.0	.	227
RPS6KB1	6198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58013587	58013587	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	RPS6KB1	NM_001272043	exon11	c.A990T	p.R330S	GAAAAGAAATGCT	.	257.0	155.0	302.0	1.0	.	1041
SARDH	1757	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136582451	136582451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SARDH	NM_007101	exon8	c.C1147A	p.P383T	CACCAGGGCCGCA	.	33.0	12.0	56.0	0.0	.	90
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77134131	77134131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SCAPER	NM_020843	exon4	c.G337A	p.A113T	CTACTGCTCGGCG	.	151.0	87.0	271.0	0.0	.	137
SF3A3	10946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38453345	38453345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SF3A3	NM_006802	exon4	c.G203A	p.R68Q	TCCTTTCGTAATC	.	131.0	54.0	220.0	0.0	.	90
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52001391	52001391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SIGLEC12	NM_053003	exon5	c.G1286T	p.G429V	AGCACCCCAAGGT	.	66.0	17.0	86.0	0.0	.	96
SIRPD	128646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1532400	1532400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SIRPD	NM_178460	exon2	c.T358C	p.F120L	TTATGAACTTCAC	.	79.0	24.0	137.0	0.0	.	227
SLC10A5	347051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82606130	82606130	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SLC10A5	NM_001010893	exon1	c.C1078T	p.L360L	GAGGCAGCGTACA	.	47.0	13.0	130.0	0.0	.	90
SLC25A12	8604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	172691267	172691267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SLC25A12	NM_003705	exon7	c.G721T	p.G241C	TTGTGCCAGCTAG	.	47.0	8.0	112.0	0.0	.	90
SLC2A3	6515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8086448	8086448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SLC2A3	NM_006931	exon2	c.C66A	p.F22L	AAATTGGAAAGAG	.	143.0	47.0	211.0	0.0	.	94
SMAP2	64744	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40839819	40839819	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SMAP2	NM_022733	exon1	c.G27A	p.V9V	GGACGTGGATCGG	.	124.0	47.0	198.0	0.0	.	68
STBD1	8987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77230589	77230589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	STBD1	NM_003943	exon2	c.G513T	p.E171D	TGCAGAGAAGTTG	.	109.0	42.0	146.0	0.0	.	69
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70652470	70652470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	STOX1	NM_152709	exon4	c.T2948C	p.L983P	TACCGCTAACTCC	.	180.0	77.0	303.0	0.0	.	92
SYCP2L	221711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	10894136	10894136	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	SYCP2L	NM_001040274	exon3	c.G115T	p.G39X	GATAAAGGATTTC	.	173.0	70.0	285.0	0.0	.	24
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70680629	70680629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TAF1	NM_004606	exon37	c.A5435G	p.H1812R	CTTCCCATGGTTT	.	90.0	67.0	146.0	0.0	.	900
TAS2R39	259285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	142881187	142881187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TAS2R39	NM_176881	exon1	c.C676A	p.L226M	TTCATCCTGACAG	.	181.0	12.0	260.0	0.0	.	1
TBC1D26	353149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	15642100	15642100	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TBC1D26	NM_178571	exon8	c.C453T	p.H151H	CAGCCACACCCTG	.	222.0	94.0	585.0	1.0	.	90
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	166711893	166711893	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001122679	exon1	c.C51T	p.G17G	CTGTGGCAAAGAG	.	72.0	22.0	85.0	0.0	.	.
TEX261	113419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71215838	71215838	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TEX261	NM_144582	exon6	c.C483T	p.V161V	GGAGACGACATCA	.	68.0	27.0	101.0	0.0	.	90
TIMP4	7079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	12195189	12195189	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TIMP4	NM_003256	exon5	c.501delC	p.P167fs	GGTACAGGGTACT	.	105.0	23.0	202.0	0.0	.	226
TNFRSF25	8718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6522204	6522204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TNFRSF25	NM_148965	exon9	c.C802T	p.H268Y	GGGTGTGGGCGCT	.	102.0	35.0	146.0	0.0	.	714
TRIM71	131405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	32915309	32915309	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TRIM71	NM_001039111	exon2	c.853-1G>A	.	TCCCCAGGTGCTG	.	199.0	32.0	299.0	0.0	.	92
TRMT10C	54931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101283884	101283884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_017819	exon2	c.G259A	p.D87N	AGTAAGGATGAAG	.	118.0	44.0	193.0	0.0	.	.
TRPV4	59341	ucsc.edu;bcgsc.ca	37	12	110234363	110234363	+	Silent	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TRPV4	NM_021625	exon7	c.G1299A	p.V433V	CTCCAGCACGGAG	.	41.0	4.0	56.0	0.0	.	94
TRPV5	56302	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142612521	142612521	+	Silent	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TRPV5	NM_019841	exon10	c.C1242T	p.R414R	AAAATAGCGAGAG	.	111.0	39.0	189.0	2.0	.	177
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31768122	31768122	+	Silent	SNP	C	C	T	rs147790864	byfrequency	TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	TSHZ3	NM_020856	exon2	c.G2577A	p.T859T	TTTTGACGTGTGG	.	92.0	34.0	165.0	0.0	C|0.998;T|0.002	232
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134751175	134751175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	NM_001200049	exon6	c.C541A	p.L181I	CCAGAAGTTCCCT	.	44.0	30.0	98.0	0.0	.	.
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49939462	49939462	+	Silent	SNP	G	G	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	WDFY4	NM_020945	exon9	c.G1437T	p.G479G	CCCTGGGCCATCC	.	41.0	12.0	56.0	0.0	.	22
YWHAZ	7534	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	101960838	101960838	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	YWHAZ	NM_145690	exon2	c.T280A	p.C94S	CATTGCAGATATC	.	158.0	12.0	286.0	0.0	.	658
ZBTB7B	51043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154988092	154988092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZBTB7B	NM_001252406	exon4	c.G1058A	p.S353N	ACCTAAGCTCCCT	.	93.0	16.0	91.0	0.0	.	90
ZNF236	7776	ucsc.edu;bcgsc.ca	37	18	74637445	74637445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF236	NM_007345	exon22	c.A3956G	p.Q1319R	CAGGACAGTTTGA	.	50.0	5.0	85.0	0.0	.	94
ZNF432	9668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52538685	52538685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF432	NM_014650	exon5	c.G247A	p.E83K	CAACTTCGTTGTT	.	163.0	61.0	246.0	0.0	.	154
ZNF560	147741	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9580387	9580387	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	ZNF560	NM_152476	exon9	c.449-1G>A	.	GGTAACCTGTACA	.	78.0	9.0	167.0	1.0	.	158
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71823203	71823204	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	.	.	.	p.G83V	AGGGTAGCCCAGC	.	111.0	52.0	169.0	0.0	.	.
OR2B11	127623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247615107	247615108	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DD-A115-01A-11D-A12Z-10	TCGA-DD-A115-10A-01D-A12Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29d6950d-f63e-48ca-afb5-cdd95aa16f0e	97ef9891-4c64-4f64-b1be-59895971138d	.	.	.	.	.	p.H60N	GGCTGTGGAGTTG	.	88.0	34.0	124.0	0.0	.	.