Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA8	10351	hgsc.bcm.edu;bcgsc.ca	37	17	66873815	66873815	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCA8	NM_007168	exon31	c.A3924G	p.L1308L	TTTCAGTAGCACC	.	62.0	4.0	95.0	0.0	.	93
ABCA8	10351	hgsc.bcm.edu;bcgsc.ca	37	17	66890418	66890418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCA8	NM_007168	exon21	c.A2812G	p.R938G	TCAATCTTTTGGC	.	80.0	4.0	71.0	0.0	.	93
ABCC1	4363	ucsc.edu;bcgsc.ca	37	16	16228238	16228238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCC1	NM_004996	exon28	c.A3998G	p.K1333R	CTGGGAAGTCGTC	.	51.0	5.0	62.0	0.0	.	94
ADAMTS6	11174	hgsc.bcm.edu;bcgsc.ca	37	5	64510631	64510631	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADAMTS6	NM_197941	exon20	c.T2565C	p.T855T	AGCACAAGTAGCT	.	110.0	5.0	119.0	0.0	.	226
ADCY9	115	hgsc.bcm.edu;bcgsc.ca	37	16	4164949	4164949	+	Silent	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADCY9	NM_001116	exon2	c.C495A	p.T165T	CAGCTTGGTGAAG	.	50.0	4.0	70.0	0.0	.	139
AKAP9	10142	hgsc.bcm.edu;bcgsc.ca	37	7	91706167	91706167	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKAP9	NM_005751	exon29	c.6613-2A>G	.	TATTAAAGATTAC	.	121.0	5.0	171.0	0.0	.	755
AKNAD1	254268	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109394791	109394791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKNAD1	NM_152763	exon2	c.C496T	p.P166S	GTTCTGGGGTTTG	.	294.0	14.0	412.0	0.0	.	93
ALB	213	hgsc.bcm.edu;bcgsc.ca	37	4	74274385	74274385	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALB	NM_000477	exon4	c.T345C	p.C115C	CTGCTGTGCAAAA	.	118.0	5.0	212.0	0.0	.	96
ALDH8A1	64577	hgsc.bcm.edu;bcgsc.ca	37	6	135239987	135239987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALDH8A1	NM_022568	exon7	c.A1030G	p.R344G	GAGCTCTCTTGAC	.	106.0	6.0	124.0	0.0	.	94
ALS2CL	259173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46722798	46722798	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALS2CL	NM_001190707	exon13	c.G1374A	p.R458R	CGTGTACCTGAAG	.	152.0	53.0	211.0	0.0	.	155
ANKRD2	26287	hgsc.bcm.edu;bcgsc.ca	37	10	99342105	99342105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ANKRD2	NM_020349	exon7	c.A769G	p.T257A	GTCCGGACAGGGC	.	65.0	5.0	113.0	0.0	.	90
AP2B1	163	hgsc.bcm.edu;bcgsc.ca	37	17	33925250	33925250	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AP2B1	NM_001282	exon3	c.A39G	p.G13G	TGCAGGAGAAATA	.	85.0	4.0	110.0	0.0	.	91
APOBEC1	339	hgsc.bcm.edu;bcgsc.ca	37	12	7805229	7805229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	APOBEC1	NM_001644	exon3	c.T247C	p.S83P	TGATGGAGCAGCT	.	64.0	4.0	94.0	0.0	.	226
APOM	55937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31623826	31623826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	APOM	NM_019101	exon1	c.A83C	p.Q28P	ACAGTCAACTGAC	.	208.0	41.0	158.0	0.0	.	90
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	148802995	148802995	+	Nonsense_Mutation	SNP	G	G	T	rs138388284	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARHGAP10	NM_024605	exon10	c.G946T	p.G316X	GGGGACGGAGAGG	.	110.0	38.0	188.0	0.0	G|1.000;A|0.000	229
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	148984403	148984403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARHGAP10	NM_024605	exon21	c.C2132A	p.P711H	CGTCCCCTTTCCC	.	131.0	30.0	148.0	0.0	.	229
ASXL2	55252	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	25965337	25965337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ASXL2	NM_018263	exon12	c.G3869C	p.S1290T	GTAGAACTGAAAA	.	138.0	10.0	187.0	0.0	.	23
ATL3	25923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63396832	63396832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATL3	NM_015459	exon13	c.G1585T	p.A529S	CAACTGCATCCCT	.	249.0	102.0	277.0	0.0	.	69
ATP2B1	490	hgsc.bcm.edu;bcgsc.ca	37	12	90014010	90014010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATP2B1	NM_001001323	exon10	c.A1595G	p.E532G	TCTTTCTCTGGTG	.	96.0	4.0	139.0	0.0	.	516
ATR	545	hgsc.bcm.edu;bcgsc.ca	37	3	142226823	142226823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATR	NM_001184	exon28	c.T4981C	p.F1661L	TAATAAATGATTC	.	114.0	5.0	139.0	0.0	.	1139
BRCA2	675	hgsc.bcm.edu;bcgsc.ca	37	13	32914823	32914823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BRCA2	NM_000059	exon11	c.A6331G	p.K2111E	GTTGATAAGAGAA	.	96.0	4.0	102.0	0.0	.	3153
C17orf64	124773	hgsc.bcm.edu;bcgsc.ca	37	17	58508620	58508620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C17orf64	NM_181707	exon6	c.A704G	p.E235G	AGACTGAACCGTA	.	84.0	5.0	109.0	0.0	.	271
C18orf54	162681	hgsc.bcm.edu;bcgsc.ca	37	18	51889221	51889221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C18orf54	NM_173529	exon4	c.A670G	p.K224E	ATGAAAAAGGATG	.	81.0	4.0	101.0	0.0	.	92
C19orf21	126353	hgsc.bcm.edu;bcgsc.ca	37	19	758323	758323	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C19orf21	NM_173481	exon2	c.T1377C	p.T459T	TGCGACTTCACCA	.	81.0	4.0	75.0	0.0	.	91
C21orf62	56245	hgsc.bcm.edu;bcgsc.ca	37	21	34166650	34166650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C21orf62	NM_001162495	exon4	c.A83G	p.K28R	CTGTTCTTCTGAC	.	98.0	5.0	140.0	0.0	.	91
C2CD3	26005	hgsc.bcm.edu;bcgsc.ca	37	11	73824846	73824846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C2CD3	NM_015531	exon11	c.T1822C	p.S608P	TACTGGAGGCGAG	.	76.0	5.0	90.0	0.0	.	75
C2orf16	84226	hgsc.bcm.edu;bcgsc.ca	37	2	27802654	27802654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C2orf16	NM_032266	exon1	c.T3215C	p.L1072P	ATTATCTTTCCCA	.	108.0	5.0	142.0	0.0	.	67
C2orf16	84226	hgsc.bcm.edu;bcgsc.ca	37	2	27803186	27803186	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C2orf16	NM_032266	exon1	c.A3747G	p.R1249R	AACTAGAGCACCT	.	116.0	5.0	161.0	0.0	.	67
C6orf211	79624	hgsc.bcm.edu;bcgsc.ca	37	6	151789976	151789976	+	Missense_Mutation	SNP	T	T	C	rs140306203	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C6orf211	NM_024573	exon5	c.T1057C	p.Y353H	GACTTATATGCTG	.	93.0	4.0	202.0	0.0	T|1.000;C|0.000	90
C7orf25	79020	hgsc.bcm.edu;bcgsc.ca	37	7	42950513	42950513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C7orf25	NM_001099858	exon2	c.A161G	p.N54S	GCATTATTCCTTT	.	70.0	4.0	103.0	0.0	.	69
C9orf72	203228	hgsc.bcm.edu;bcgsc.ca	37	9	27556627	27556627	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C9orf72	NM_018325	exon8	c.A1023G	p.R341R	AGTGGCTCTCCAG	.	119.0	5.0	208.0	0.0	.	517
CAMTA2	23125	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	4883056	4883056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CAMTA2	NM_001171167	exon9	c.A1630G	p.I544V	CAGGGATGCTTGG	.	42.0	4.0	91.0	0.0	.	91
CASS4	57091	hgsc.bcm.edu;bcgsc.ca	37	20	55025710	55025710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CASS4	NM_020356	exon4	c.T617C	p.L206P	CAGGACTCCATCC	.	91.0	5.0	120.0	0.0	.	25
CCDC180	0	hgsc.bcm.edu;bcgsc.ca	37	9	100074426	100074426	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_020893	exon4	c.C424A	p.R142R	AAAGCCCGAGAGA	.	73.0	4.0	95.0	0.0	.	.
CCDC24	149473	hgsc.bcm.edu;bcgsc.ca	37	1	44461509	44461509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC24	NM_152499	exon8	c.T682C	p.C228R	CCTTCTTGTGTCT	.	86.0	4.0	116.0	0.0	.	90
CCER1	196477	hgsc.bcm.edu;ucsc.edu	37	12	91348403	91348403	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_152638	exon1	c.T117C	p.H39H	CCTTCGATGGCAG	.	47.0	5.0	34.0	0.0	.	.
CCM2	83605	hgsc.bcm.edu;bcgsc.ca	37	7	45077891	45077891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCM2	NM_001029835	exon2	c.G133T	p.G45C	CTAAAAGGTGAAA	.	71.0	4.0	93.0	0.0	.	90
CCR10	2826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	40831707	40831707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCR10	NM_016602	exon2	c.G953A	p.R318H	TCCTGGCGGAAGC	.	63.0	20.0	59.0	0.0	.	522
CDC45	8318	hgsc.bcm.edu;bcgsc.ca	37	22	19502321	19502321	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDC45	NM_001178010	exon15	c.C1363T	p.L455L	AAGCAGCTGCGAG	.	59.0	4.0	74.0	0.0	.	227
CDH18	1016	hgsc.bcm.edu;bcgsc.ca	37	5	19544066	19544066	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDH18	NM_001167667	exon9	c.T1302C	p.D434D	ATTGGCATCAATG	.	114.0	6.0	169.0	0.0	.	159
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123156882	123156882	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDK5RAP2	NM_018249	exon36	c.A5486T	p.H1829L	TTTTTATGTAGTT	.	252.0	35.0	319.0	0.0	.	229
CEP63	80254	hgsc.bcm.edu;bcgsc.ca	37	3	134270790	134270790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CEP63	NM_025180	exon13	c.C1403T	p.S468L	TGGAGTCACTCAA	.	93.0	4.0	83.0	0.0	.	493
CFTR	1080	hgsc.bcm.edu;bcgsc.ca	37	7	117232660	117232660	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CFTR	NM_000492	exon14	c.T2439C	p.S813S	GTTATCTCAAGAA	.	61.0	4.0	83.0	0.0	.	518
CHTF8	54921	hgsc.bcm.edu;bcgsc.ca	37	16	69154536	69154536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CHTF8	NM_001039690	exon4	c.T158C	p.I53T	CCCACGATCAGCA	.	79.0	4.0	90.0	0.0	.	87
CISD1	55847	hgsc.bcm.edu;bcgsc.ca	37	10	60047332	60047332	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CISD1	NM_018464	exon3	c.T249C	p.C83C	ATTCTGTGATGGG	.	99.0	4.0	134.0	0.0	.	90
CLASP1	23332	hgsc.bcm.edu;bcgsc.ca	37	2	122205082	122205082	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CLASP1	NM_001207051	exon19	c.T1743C	p.A581A	TGTAGAAGCTTTA	.	83.0	4.0	109.0	0.0	.	91
CNBD1	168975	hgsc.bcm.edu;bcgsc.ca	37	8	88218281	88218281	+	Silent	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNBD1	NM_173538	exon5	c.A492C	p.P164P	AATTCCAGATTTA	.	113.0	5.0	63.0	0.0	.	3
CNGB1	1258	hgsc.bcm.edu;bcgsc.ca	37	16	57998104	57998104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNGB1	NM_001297	exon4	c.A220G	p.T74A	CCTTGGTCTCTGG	.	89.0	4.0	83.0	0.0	.	137
COBL	23242	hgsc.bcm.edu;bcgsc.ca	37	7	51096495	51096495	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	COBL	NM_015198	exon10	c.A2298G	p.K766K	TCTGACTTTCCCA	.	86.0	5.0	150.0	0.0	.	95
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130174346	130174346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_153264	exon37	c.T6626C	p.I2209T	GCTTCATTGGCCA	.	277.0	38.0	301.0	0.0	.	.
CTCF	10664	hgsc.bcm.edu;bcgsc.ca	37	16	67644896	67644896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CTCF	NM_006565	exon3	c.T161C	p.V54A	AGGATGTCAACAG	.	56.0	4.0	80.0	0.0	.	91
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G101T	p.G34V	ACTCTGGAATCCA	.	209.0	13.0	260.0	1.0	G|1.000;T|0.000	24361
CXADR	1525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	18933790	18933790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CXADR	NM_001207066	exon6	c.A829G	p.I277V	CACGATATCAGGT	.	179.0	11.0	240.0	0.0	.	227
CYB5RL	606495	hgsc.bcm.edu;bcgsc.ca	37	1	54640392	54640392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001031672	exon8	c.A848G	p.K283R	AATGGCTTTCTCC	.	41.0	4.0	62.0	0.0	.	.
DACH2	117154	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	86069720	86069720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DACH2	NM_053281	exon10	c.A1567G	p.K523E	AAGGAGAAAAAAA	.	46.0	4.0	41.0	0.0	.	136
DCDC5	100506627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	30900222	30900222	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DCDC5	NM_020869	exon19	c.C2582G	p.A861G	ATTCTGGCATAAT	.	95.0	39.0	90.0	0.0	.	23
DDB1	1642	hgsc.bcm.edu;bcgsc.ca	37	11	61097525	61097525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DDB1	NM_001923	exon3	c.T232C	p.F78L	AGATAAACAGCAG	.	142.0	6.0	141.0	0.0	.	661
DENND5B	160518	hgsc.bcm.edu;bcgsc.ca	37	12	31605207	31605207	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DENND5B	NM_144973	exon5	c.A1296G	p.K432K	GTTCTTTTTGTCA	.	88.0	4.0	144.0	0.0	.	24
DFNA5	1687	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	24756897	24756897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DFNA5	NM_001127453	exon5	c.T673C	p.Y225H	TCACGTATAACTC	.	43.0	4.0	61.0	0.0	.	91
DHRS7	51635	hgsc.bcm.edu;bcgsc.ca	37	14	60619873	60619873	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DHRS7	NM_016029	exon4	c.T417C	p.G139G	CATTCCACCATTG	.	102.0	5.0	123.0	0.0	.	91
DHX36	170506	hgsc.bcm.edu;bcgsc.ca	37	3	153998561	153998561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DHX36	NM_020865	exon21	c.A2467G	p.I823V	AATTTATATTAGA	.	88.0	4.0	109.0	0.0	.	226
DLG2	1740	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	83173062	83173062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DLG2	NM_001142699	exon27	c.T2804C	p.F935S	TCTCCAAATTCTT	.	496.0	53.0	552.0	0.0	.	96
DMD	1756	hgsc.bcm.edu;bcgsc.ca	37	X	32366626	32366626	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DMD	NM_004006	exon38	c.A5345G	p.E1782G	TCCAATTCCTTCA	.	74.0	5.0	106.0	0.0	.	265
DNM1L	10059	hgsc.bcm.edu;bcgsc.ca	37	12	32854462	32854462	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DNM1L	NM_012062	exon2	c.A216G	p.Q72Q	TTCACAAGAAGAT	.	88.0	4.0	93.0	0.0	.	92
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62995054	62995054	+	Silent	SNP	T	T	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DOCK7	NM_001271999	exon30	c.A3675C	p.S1225S	CGGGTCTGAGTCG	.	119.0	12.0	161.0	0.0	.	92
DPP3	10072	hgsc.bcm.edu;broad.mit.edu	37	11	66249887	66249887	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DPP3	NM_001256670	exon2	c.C216T	p.P72P	GGACCCCGACCAG	.	34.0	4.0	30.0	0.0	.	46
DTWD1	56986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49935632	49935632	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DTWD1	NM_001144955	exon5	c.C772T	p.L258L	TACTTTCTGGTAG	.	220.0	13.0	255.0	0.0	.	226
ELTD1	64123	hgsc.bcm.edu;bcgsc.ca	37	1	79385900	79385900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ELTD1	NM_022159	exon10	c.T1429C	p.F477L	CAAGAAAAACAAG	.	75.0	4.0	91.0	0.0	.	24
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	77075681	77075681	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ENGASE	NM_001042573	exon4	c.G527C	p.W176S	TGGGCTGGACCAA	.	124.0	52.0	123.0	0.0	.	91
ERAP1	51752	hgsc.bcm.edu;bcgsc.ca	37	5	96119656	96119656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ERAP1	NM_001198541	exon14	c.A2072G	p.D691G	TTCATATCTCTTT	.	89.0	4.0	110.0	0.0	.	70
EXPH5	23086	hgsc.bcm.edu;bcgsc.ca	37	11	108398908	108398908	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXPH5	NM_015065	exon4	c.T447C	p.C149C	GCCATCACATCTG	.	66.0	4.0	84.0	0.0	.	95
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108464205	108464205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXPH5	NM_015065	exon1	c.A59G	p.K20R	AGGATCTTCCTGG	.	199.0	8.0	202.0	0.0	.	95
FAM131B	9715	hgsc.bcm.edu;bcgsc.ca	37	7	143054115	143054115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM131B	NM_001031690	exon7	c.A611G	p.D204G	AGGGCATCTGGAA	.	74.0	4.0	74.0	0.0	.	90
FAM160A1	729830	hgsc.bcm.edu;bcgsc.ca	37	4	152571430	152571430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001109977	exon11	c.C2237T	p.P746L	CCCACCCGGAGAG	.	79.0	4.0	87.0	0.0	.	.
FAM221A	340277	ucsc.edu;bcgsc.ca	37	7	23729036	23729036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_199136	exon3	c.G388A	p.A130T	CACTTTGCTGATC	.	38.0	4.0	50.0	0.0	.	.
FGF6	2251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4553334	4553334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FGF6	NM_020996	exon2	c.G415A	p.V139I	TGGCAACGAAGAG	.	95.0	24.0	103.0	0.0	.	659
FHDC1	85462	hgsc.bcm.edu;bcgsc.ca	37	4	153884235	153884235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FHDC1	NM_033393	exon7	c.A982G	p.T328A	GCAGACACAAAAG	.	68.0	4.0	93.0	0.0	.	136
FIGN	55137	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	164467698	164467698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FIGN	NM_018086	exon3	c.A644G	p.H215R	GAGCTATGCAAAG	.	178.0	50.0	193.0	1.0	.	156
FRS2	10818	hgsc.bcm.edu;bcgsc.ca	37	12	69968235	69968235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FRS2	NM_001042555	exon10	c.A1027G	p.R343G	CAGAGAAGAACTG	.	64.0	4.0	89.0	0.0	.	658
FTSJ3	117246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	61902423	61902423	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FTSJ3	NM_017647	exon8	c.T696C	p.T232T	CTTCTTAGTAACC	.	86.0	5.0	98.0	0.0	.	91
FYB	2533	hgsc.bcm.edu;bcgsc.ca	37	5	39130699	39130699	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FYB	NM_001243093	exon10	c.A1863G	p.G621G	TCCACTTCCACTC	.	73.0	5.0	72.0	0.0	.	24
GABRG1	2565	hgsc.bcm.edu;bcgsc.ca	37	4	46067446	46067446	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GABRG1	NM_173536	exon4	c.C477T	p.H159H	TATCCAGTGAGCA	.	77.0	4.0	117.0	0.0	.	92
GLG1	2734	hgsc.bcm.edu;bcgsc.ca	37	16	74528672	74528672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GLG1	NM_001145667	exon6	c.T1036C	p.S346P	TCATGGATTCTTC	.	88.0	4.0	94.0	0.0	.	136
GLT6D1	360203	hgsc.bcm.edu;bcgsc.ca	37	9	138516329	138516329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GLT6D1	NM_182974	exon5	c.G445A	p.V149M	CATGCACCAGGGG	.	47.0	4.0	80.0	0.0	.	91
GMPS	8833	hgsc.bcm.edu;bcgsc.ca	37	3	155629067	155629067	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GMPS	NM_003875	exon7	c.A885G	p.K295K	GGTCAAAGGTATT	.	89.0	4.0	117.0	0.0	.	229
GNAL	2774	hgsc.bcm.edu;bcgsc.ca	37	18	11862404	11862404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GNAL	NM_182978	exon6	c.A733G	p.R245G	CTGGAAAGAATCG	.	76.0	6.0	88.0	0.0	.	228
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	131616271	131616271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR133	NM_198827	exon21	c.T2177C	p.V726A	TGCAGGTCAACAT	.	167.0	7.0	140.0	0.0	.	191
GPR143	4935	hgsc.bcm.edu;bcgsc.ca	37	X	9711666	9711666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR143	NM_000273	exon6	c.A706G	p.R236G	TCCTCCTCTCGTT	.	70.0	4.0	67.0	0.0	.	131
GPR68	8111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	91700443	91700443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR68	NM_001177676	exon2	c.G952A	p.E318K	AGGCCTCCCTGGC	.	23.0	6.0	18.0	0.0	.	91
GRIPAP1	56850	ucsc.edu;bcgsc.ca	37	X	48853705	48853705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GRIPAP1	NM_020137	exon5	c.A263G	p.D88G	CGGAAGTCCTCCT	.	33.0	4.0	35.0	0.0	.	227
GUCY1B3	2983	ucsc.edu;bcgsc.ca	37	4	156724822	156724822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_000857	exon11	c.A1460G	p.E487G	TACCAGAGCCATG	.	50.0	4.0	78.0	1.0	.	.
H1FNT	341567	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48723755	48723755	+	Silent	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	H1FNT	NM_181788	exon1	c.G681C	p.P227P	CACGCCGAGGTCA	.	37.0	8.0	51.0	1.0	.	91
HDAC1	3065	hgsc.bcm.edu;bcgsc.ca	37	1	32797350	32797350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HDAC1	NM_004964	exon11	c.G1162A	p.A388T	GAGGACGCCATCC	.	70.0	4.0	87.0	0.0	.	659
HERC2	8924	hgsc.bcm.edu;bcgsc.ca	37	15	28493786	28493786	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HERC2	NM_004667	exon21	c.T3147C	p.A1049A	CAATGAAGCAGAT	.	82.0	4.0	125.0	0.0	.	234
HIST1H1E	3008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	26156943	26156943	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HIST1H1E	NM_005321	exon1	c.A325T	p.K109X	CTCAACAAGAAGG	.	141.0	52.0	119.0	0.0	.	154
HIST1H1E	3008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	26156946	26156946	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HIST1H1E	NM_005321	exon1	c.A328T	p.K110X	AACAAGAAGGCGG	.	146.0	55.0	110.0	0.0	.	154
HMGXB4	10042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	35661108	35661108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HMGXB4	NM_001003681	exon5	c.A727G	p.S243G	TTACAGAGCTTTC	.	132.0	16.0	142.0	0.0	.	272
HPS6	79803	hgsc.bcm.edu;bcgsc.ca	37	10	103827332	103827332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HPS6	NM_024747	exon1	c.C2101T	p.P701S	CTGGCTCCAGCTG	.	56.0	4.0	55.0	0.0	.	90
HTR2B	3357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231973880	231973880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HTR2B	NM_000867	exon4	c.C797T	p.T266I	AAAACTGTAGACA	.	147.0	57.0	248.0	0.0	.	90
IFIT1B	439996	hgsc.bcm.edu;bcgsc.ca	37	10	91144106	91144106	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IFIT1B	NM_001010987	exon2	c.C1036T	p.L346L	GTTGACCTGGCTG	.	61.0	4.0	60.0	0.0	.	90
IPCEF1	26034	hgsc.bcm.edu;bcgsc.ca	37	6	154480993	154480993	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IPCEF1	NM_001130699	exon13	c.T1287C	p.P429P	AGAAGAAGGTGAT	.	57.0	5.0	79.0	0.0	.	90
IQCB1	9657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	121527778	121527778	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IQCB1	NM_001023570	exon6	c.G472T	p.E158X	TAAGTTCAACATG	.	271.0	103.0	240.0	0.0	.	90
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	65307245	65307245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	JAK1	NM_002227	exon18	c.C2443T	p.P815S	ATGATGGTGTCAC	.	148.0	45.0	177.0	0.0	.	3900
KANK4	163782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62739084	62739084	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KANK4	NM_181712	exon3	c.G1692T	p.V564V	CTTCTTCACATAC	.	151.0	22.0	251.0	0.0	.	74
KAT6A	7994	hgsc.bcm.edu;bcgsc.ca	37	8	41791422	41791422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001099412	exon18	c.A4316G	p.H1439R	CCCTCATGCTCAC	.	61.0	5.0	109.0	0.0	.	.
KCNB2	9312	broad.mit.edu;bcgsc.ca	37	8	73480279	73480279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KCNB2	NM_004770	exon2	c.C310T	p.R104W	TTCTACCGGACCG	.	302.0	21.0	178.0	1.0	.	158
KIAA0319L	79932	hgsc.bcm.edu;bcgsc.ca	37	1	35972224	35972224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA0319L	NM_024874	exon3	c.G655A	p.G219S	CAGAGCCACTGGT	.	123.0	5.0	184.0	0.0	.	92
KIAA0391	9692	hgsc.bcm.edu;bcgsc.ca	37	14	35596745	35596745	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA0391	NM_014672	exon4	c.T1095C	p.Y365Y	AGAATATGAATGT	.	92.0	4.0	110.0	0.0	.	226
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	51901222	51901222	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIF2B	NM_032559	exon1	c.C828T	p.N276N	CTCCAACGAGTTG	.	112.0	36.0	102.0	0.0	.	98
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154394167	154394167	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIF4B	NM_001099293	exon1	c.A748C	p.T250P	AAGAAAACCAAGG	.	269.0	19.0	227.0	0.0	.	1
KLHDC7A	127707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	18809370	18809370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KLHDC7A	NM_152375	exon1	c.G1895A	p.R632H	CGGTGCGTGCCAA	.	26.0	13.0	47.0	0.0	.	93
KPNA3	3839	hgsc.bcm.edu;bcgsc.ca	37	13	50285129	50285129	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KPNA3	NM_002267	exon11	c.A801G	p.S267S	CAAGTATGACAGA	.	68.0	4.0	100.0	0.0	.	226
KRTAP26-1	388818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31692292	31692292	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KRTAP26-1	NM_203405	exon1	c.A62C	p.H21P	GGAATATGGCGGG	.	109.0	16.0	136.0	0.0	.	69
LAMP1	3916	hgsc.bcm.edu;bcgsc.ca	37	13	113973926	113973926	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LAMP1	NM_005561	exon5	c.C705T	p.S235S	GGCCAGCATGGGG	.	35.0	4.0	43.0	0.0	.	514
LCN8	138307	hgsc.bcm.edu;bcgsc.ca	37	9	139651509	139651509	+	Missense_Mutation	SNP	C	C	T	rs140571672		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LCN8	NM_178469	exon2	c.G136A	p.V46M	CCTTCACGGTCAG	.	76.0	4.0	90.0	0.0	C|1.000;T|0.000	91
LEPRE1	64175	hgsc.bcm.edu;bcgsc.ca	37	1	43224582	43224582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LEPRE1	NM_001146289	exon4	c.A881G	p.K294R	AAGGGCTTCTCTC	.	70.0	4.0	102.0	0.0	.	94
LPCAT2	54947	ucsc.edu;bcgsc.ca	37	16	55563789	55563789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LPCAT2	NM_017839	exon4	c.A572G	p.D191G	GTGTAGATCCGGA	.	64.0	6.0	69.0	0.0	.	90
LRRC16B	90668	hgsc.bcm.edu;bcgsc.ca	37	14	24533482	24533482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC16B	NM_138360	exon32	c.A3007G	p.N1003D	CAGGAGAATGGGA	.	56.0	4.0	51.0	0.0	.	139
LRRC24	441381	hgsc.bcm.edu;broad.mit.edu	37	8	145748134	145748134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC24	NM_001024678	exon5	c.G1267A	p.A423T	TCATGGCGACCAG	.	34.0	7.0	16.0	0.0	.	90
LRRC3B	116135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	26751740	26751740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC3B	NM_052953	exon2	c.G577T	p.D193Y	GACGCTGACCTTT	.	146.0	10.0	197.0	0.0	.	94
LRRC8A	56262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131670854	131670855	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC8A	NM_001127244	exon3	c.1411_1412del	p.471_471del	ACGGGCCTCAAGG	.	40.0	11.0	68.0	0.0	.	90
MACROD2	140733	hgsc.bcm.edu;bcgsc.ca	37	20	15967784	15967784	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MACROD2	NM_080676	exon15	c.A1134G	p.E378E	CCAAGAAGAAAAA	.	78.0	4.0	91.0	0.0	.	22
MAT1A	4143	hgsc.bcm.edu;bcgsc.ca	37	10	82049166	82049166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MAT1A	NM_000429	exon1	c.T14C	p.V5A	CCATCCACCGGTC	.	85.0	6.0	179.0	0.0	.	90
MC5R	4161	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	13826628	13826628	+	Silent	SNP	C	C	T	rs142287236	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MC5R	NM_005913	exon1	c.C864T	p.S288S	TAATTCCGTGATG	.	311.0	41.0	360.0	1.0	C|1.000;T|0.000	526
MED17	9440	hgsc.bcm.edu;bcgsc.ca	37	11	93528080	93528080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED17	NM_004268	exon6	c.C866T	p.P289L	GTTCCCCACATTG	.	84.0	4.0	99.0	0.0	.	187
MED21	9412	hgsc.bcm.edu;bcgsc.ca	37	12	27181241	27181241	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED21	NM_004264	exon4	c.A282G	p.E94E	GCTAGAAGAAGAA	.	75.0	4.0	90.0	0.0	.	227
MED24	9862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38179530	38179530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED24	NM_014815	exon20	c.C2104T	p.P702S	TGGGGGGCAGCAG	.	94.0	20.0	128.0	0.0	.	187
MEGF8	1954	hgsc.bcm.edu;bcgsc.ca	37	19	42874933	42874933	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MEGF8	NM_001271938	exon40	c.A7086G	p.K2362K	GGAGAAATGCGAG	.	80.0	4.0	66.0	0.0	.	23
MEP1B	4225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29790544	29790544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MEP1B	NM_005925	exon10	c.C1000A	p.P334T	CTGTACCCTAAAA	.	58.0	25.0	82.0	0.0	.	92
MKS1	54903	hgsc.bcm.edu;bcgsc.ca	37	17	56290446	56290446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MKS1	NM_017777	exon8	c.A755G	p.E252G	TCCGTCTCAATCC	.	53.0	4.0	74.0	0.0	.	91
MMP14	4323	hgsc.bcm.edu;broad.mit.edu	37	14	23310816	23310816	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MMP14	NM_004995	exon2	c.A225G	p.Q75Q	CTTGCAAGTAACA	.	44.0	4.0	48.0	0.0	.	226
MON2	23041	hgsc.bcm.edu;bcgsc.ca	37	12	62887709	62887709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MON2	NM_015026	exon3	c.A190G	p.S64G	GAGAACAGCTCAG	.	86.0	4.0	142.0	0.0	.	514
MTFR2	113115	hgsc.bcm.edu;bcgsc.ca	37	6	136564084	136564084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_138419	exon4	c.T196C	p.S66P	TATCAGAGTCTAC	.	56.0	4.0	71.0	0.0	.	.
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56586080	56586080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MTMR4	NM_004687	exon6	c.T416C	p.L139P	TCGGTCAGCCCCA	.	86.0	26.0	118.0	0.0	.	91
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27414105	27414105	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MYO18A	NM_078471	exon38	c.A5561T	p.K1854M	GTCAGCTTCTCCA	.	144.0	52.0	174.0	0.0	.	22
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72119321	72119321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MYO9A	NM_006901	exon42	c.G7247A	p.R2416Q	TGCTTTCGCAACT	.	59.0	7.0	59.0	0.0	.	93
NALCN	259232	hgsc.bcm.edu;bcgsc.ca	37	13	102047689	102047689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NALCN	NM_052867	exon3	c.G136T	p.A46S	TGATGGCACAGAT	.	64.0	4.0	89.0	0.0	.	167
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47043918	47043918	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NBEAL2	NM_015175	exon32	c.A5209T	p.M1737L	GACCTTATGTCAG	.	91.0	26.0	92.0	0.0	.	69
NFATC3	4775	hgsc.bcm.edu;bcgsc.ca	37	16	68208375	68208375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFATC3	NM_173163	exon6	c.T1873C	p.F625L	TCTAATTTTCTTC	.	74.0	4.0	104.0	0.0	.	92
NFE2L1	4779	hgsc.bcm.edu;bcgsc.ca	37	17	46128683	46128683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFE2L1	NM_003204	exon2	c.A203G	p.H68R	GTATCCACCCCAA	.	81.0	4.0	99.0	0.0	.	91
NFRKB	4798	hgsc.bcm.edu;bcgsc.ca	37	11	129752348	129752348	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFRKB	NM_006165	exon8	c.A1155G	p.E385E	TTACTCTTCCTTG	.	120.0	6.0	96.0	0.0	.	93
NIP7	51388	hgsc.bcm.edu;bcgsc.ca	37	16	69375544	69375544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NIP7	NM_016101	exon5	c.A532G	p.T178A	GAAGAGACGTTGA	.	84.0	5.0	137.0	0.0	.	153
NLRC5	84166	hgsc.bcm.edu;bcgsc.ca	37	16	57067552	57067552	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NLRC5	NM_032206	exon11	c.A2514G	p.K838K	GAGGAAAGGGGCT	.	70.0	4.0	67.0	0.0	.	159
NLRP5	126206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56565030	56565030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NLRP5	NM_153447	exon13	c.C3155T	p.A1052V	CCGCCGCGTGCTG	.	151.0	21.0	131.0	1.0	.	162
NRXN1	9378	hgsc.bcm.edu;bcgsc.ca	37	2	51254792	51254792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NRXN1	NM_004801	exon2	c.A620G	p.E207G	GGCGGCTCATCGT	.	114.0	5.0	119.0	0.0	.	92
NUDC	10726	hgsc.bcm.edu;bcgsc.ca	37	1	27269479	27269479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NUDC	NM_006600	exon6	c.C664A	p.L222I	GGGGAGCTCTACA	.	72.0	4.0	110.0	0.0	.	91
ODF2	4957	hgsc.bcm.edu;bcgsc.ca	37	9	131231625	131231625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ODF2	NM_153435	exon5	c.A605G	p.K202R	GTCTGAAGTCTGA	.	63.0	4.0	89.0	0.0	.	69
OPRL1	4987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62729930	62729930	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OPRL1	NM_000913	exon4	c.C891T	p.A297A	GACTGCCGTGGCC	.	96.0	38.0	104.0	0.0	.	69
OR2W5	441932	broad.mit.edu;bcgsc.ca	37	1	247654704	247654704	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR2W5	NM_001004698	exon1	c.T275A	p.I92N	AGACCATCACCTA	.	158.0	13.0	117.0	1.0	.	115
OR4B1	119765	hgsc.bcm.edu;bcgsc.ca	37	11	48239231	48239231	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR4B1	NM_001005470	exon1	c.A870G	p.A290A	GAATGCAGAGGTG	.	74.0	4.0	61.0	0.0	.	72
OR51B4	79339	hgsc.bcm.edu;bcgsc.ca	37	11	5322255	5322255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR51B4	NM_033179	exon1	c.A922G	p.S308G	CCCTACTCTGCCC	.	72.0	4.0	84.0	0.0	.	70
OR9A4	130075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141619595	141619595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR9A4	NM_001001656	exon1	c.G920T	p.R307L	TGAAACGCTGCTG	.	61.0	24.0	69.0	0.0	.	91
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140250200	140250200	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PCDHA11	NM_018902	exon1	c.G1512A	p.S504S	GCTGTCGAGCTAC	.	142.0	11.0	114.0	0.0	.	67
PES1	23481	hgsc.bcm.edu;bcgsc.ca	37	22	30975865	30975865	+	Silent	SNP	G	G	T	rs140808409	byfrequency;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PES1	NM_014303	exon12	c.C1227A	p.P409P	TGCCACGGGGAGA	.	81.0	6.0	79.0	0.0	G|0.980;A|0.020	90
PEX6	5190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	42933450	42933450	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PEX6	NM_000287	exon13	c.C2440T	p.R814X	CACTTCGCCCCCG	.	184.0	17.0	148.0	0.0	.	91
PHLPP1	23239	hgsc.bcm.edu;bcgsc.ca	37	18	60642674	60642674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_194449	exon16	c.T3800C	p.L1267P	CTGTCCTTTGTCA	.	141.0	6.0	145.0	0.0	.	.
PKD1	5310	hgsc.bcm.edu;bcgsc.ca	37	16	2147400	2147400	+	Missense_Mutation	SNP	G	G	A	rs144593342	byfrequency	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PKD1	NM_001009944	exon33	c.C10325T	p.A3442V	TGGCCCGCCTGGC	.	18.0	4.0	31.0	0.0	G|0.998;A|0.002	91
PKD2L2	27039	hgsc.bcm.edu;bcgsc.ca	37	5	137271514	137271514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PKD2L2	NM_014386	exon13	c.A1700G	p.K567R	TGAAAAAATGGAA	.	92.0	4.0	71.0	0.0	.	90
PKNOX1	5316	hgsc.bcm.edu;bcgsc.ca	37	21	44430256	44430256	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PKNOX1	NM_004571	exon4	c.A273G	p.V91V	TGATGTAGACATC	.	53.0	4.0	66.0	0.0	.	153
PPP2R2A	5520	hgsc.bcm.edu;bcgsc.ca	37	8	26227714	26227714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPP2R2A	NM_001177591	exon10	c.A1159G	p.I387V	CGAGACATAACCC	.	108.0	5.0	200.0	0.0	.	659
PPWD1	23398	hgsc.bcm.edu;bcgsc.ca	37	5	64868003	64868003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPWD1	NM_015342	exon5	c.T859C	p.C287R	AGCGTATGTTTTT	.	75.0	4.0	84.0	0.0	.	91
PRPF8	10594	ucsc.edu;bcgsc.ca	37	17	1564444	1564444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRPF8	NM_006445	exon28	c.A4351G	p.N1451D	ACGGATTCTGCTT	.	46.0	4.0	71.0	0.0	.	525
PTPRB	5787	hgsc.bcm.edu;bcgsc.ca	37	12	70989899	70989899	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTPRB	NM_001109754	exon5	c.A1188G	p.K396K	ATTGTATTTACTA	.	98.0	5.0	149.0	0.0	.	226
PXDN	7837	hgsc.bcm.edu;bcgsc.ca	37	2	1664712	1664712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PXDN	NM_012293	exon14	c.A1778G	p.E593G	ACACACTCATAGC	.	75.0	4.0	78.0	0.0	.	166
PZP	5858	hgsc.bcm.edu;bcgsc.ca	37	12	9318676	9318676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PZP	NM_002864	exon18	c.A2230G	p.T744A	TCCAAGTCTCAGG	.	89.0	5.0	135.0	0.0	.	157
QRSL1	55278	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	107113765	107113765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	QRSL1	NM_018292	exon11	c.A1475G	p.K492R	TAGCCAAATGGTT	.	112.0	12.0	197.0	1.0	.	90
RASAL3	64926	hgsc.bcm.edu;bcgsc.ca	37	19	15569377	15569377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_022904	exon7	c.T752C	p.L251P	GGGTGCAGTGGCC	.	95.0	6.0	113.0	0.0	.	.
RDH16	8608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57351246	57351246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RDH16	NM_003708	exon1	c.A1G	p.M1V	GCCACATGGCTTT	.	79.0	9.0	113.0	0.0	.	90
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	72678720	72678720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RIMS1	NM_014989	exon2	c.T199C	p.C67R	GCTGCCTGCAAAA	.	102.0	10.0	96.0	0.0	.	144
RPL11	6135	hgsc.bcm.edu;broad.mit.edu	37	1	24022368	24022368	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPL11	NM_000975	exon5	c.A477G	p.K159K	CAGCAAAGAGGAG	.	74.0	4.0	119.0	0.0	.	226
RQCD1	9125	hgsc.bcm.edu;bcgsc.ca	37	2	219447748	219447748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RQCD1	NM_001271634	exon3	c.T259C	p.S87P	CACCAGTCTAACA	.	95.0	4.0	130.0	0.0	.	92
S1PR3	1903	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	91617111	91617111	+	Silent	SNP	C	C	T	rs138808274		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	S1PR3	NM_005226	exon2	c.C996T	p.L332L	TGCGCTCGACCCA	.	27.0	8.0	40.0	1.0	C|1.000;T|0.000	949
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23906630	23906630	+	Silent	SNP	A	A	G	rs148605896	byfrequency;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SACS	NM_014363	exon10	c.T11385C	p.A3795A	CACAAAAGCAACC	.	110.0	5.0	120.0	0.0	A|0.999;C|0.001	298
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23911630	23911630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SACS	NM_014363	exon10	c.G6385A	p.G2129R	ATCTCCCATCTTT	.	94.0	4.0	131.0	0.0	.	298
SAFB	6294	hgsc.bcm.edu;bcgsc.ca	37	19	5654111	5654111	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SAFB	NM_002967	exon12	c.A1566G	p.K522K	CAGAAAAGATGAT	.	66.0	4.0	91.0	0.0	.	228
SCGB1A1	7356	hgsc.bcm.edu;bcgsc.ca	37	11	62189867	62189867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SCGB1A1	NM_003357	exon2	c.T230C	p.I77T	AAAGCATCATTAA	.	71.0	4.0	97.0	0.0	.	90
SEMA5A	9037	hgsc.bcm.edu;bcgsc.ca	37	5	9122917	9122917	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEMA5A	NM_003966	exon14	c.T1632C	p.G544G	CCACACACCAAAG	.	135.0	6.0	158.0	0.0	.	91
SEPSECS	51091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	25156728	25156728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEPSECS	NM_016955	exon5	c.T593C	p.L198P	GTACGCAGCTCGT	.	101.0	11.0	109.0	0.0	.	90
SEPT2	4735	hgsc.bcm.edu;bcgsc.ca	37	2	242287583	242287583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEPT2	NM_001008491	exon12	c.A961G	p.I321V	GACCAGATCTTGC	.	100.0	4.0	160.0	0.0	.	68
SERPING1	710	hgsc.bcm.edu;bcgsc.ca	37	11	57374013	57374013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SERPING1	NM_001032295	exon5	c.A1022G	p.K341R	CTTTGAAAGCCAA	.	65.0	4.0	82.0	0.0	.	650
SERTAD2	9792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	64863856	64863856	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SERTAD2	NM_014755	exon2	c.C150T	p.N50N	CCTGTGGTTATAG	.	220.0	21.0	237.0	0.0	.	90
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26771552	26771552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEZ6L	NM_021115	exon15	c.G2839T	p.A947S	GAAGCGGCAGCAG	.	64.0	26.0	114.0	0.0	.	95
SFMBT2	57713	hgsc.bcm.edu;bcgsc.ca	37	10	7247842	7247842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SFMBT2	NM_001029880	exon12	c.A1379G	p.D460G	AAGATGTCCATGG	.	95.0	5.0	144.0	0.0	.	141
SH3BP5L	80851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	249106273	249106273	+	Silent	SNP	C	C	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SH3BP5L	NM_030645	exon7	c.G1008C	p.L336L	CAGGCTCAGCAGA	.	83.0	12.0	63.0	0.0	.	90
SHF	90525	hgsc.bcm.edu;bcgsc.ca	37	15	45467612	45467612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SHF	NM_138356	exon4	c.T457C	p.S153P	CCTTGGAGCCCCG	.	75.0	4.0	75.0	0.0	.	69
SIK1	150094	hgsc.bcm.edu;bcgsc.ca	37	21	44838374	44838374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIK1	NM_173354	exon12	c.A1510G	p.S504G	CAGAGCTGGTTCC	.	69.0	5.0	85.0	0.0	.	346
SIN3B	23309	hgsc.bcm.edu;bcgsc.ca	37	19	16952755	16952755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIN3B	NM_015260	exon4	c.C558A	p.F186L	GTCATTCCTGGAG	.	143.0	6.0	168.0	0.0	.	228
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	232650005	232650005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIPA1L2	NM_020808	exon1	c.G1081T	p.A361S	CAGATGCCCCAGT	.	70.0	48.0	61.0	0.0	.	95
SLC12A5	57468	hgsc.bcm.edu;bcgsc.ca	37	20	44685068	44685068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC12A5	NM_001134771	exon23	c.A3044G	p.E1015G	GGGAGGAGCCTGA	.	87.0	4.0	80.0	0.0	.	156
SLC1A6	6511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15067448	15067448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC1A6	NM_005071	exon6	c.G1009A	p.G337S	GCTGACCCCCCAG	.	84.0	8.0	109.0	0.0	.	186
SLC30A6	55676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32399138	32399138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC30A6	NM_001193513	exon3	c.A97G	p.K33E	TCCTGGAAGATAC	.	271.0	103.0	367.0	0.0	.	90
SLC38A10	124565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79234066	79234066	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC38A10	NM_001037984	exon11	c.G1260A	p.L420L	CTTCATCAAACCC	.	50.0	17.0	63.0	0.0	.	70
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105750545	105750545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLK	NM_014720	exon2	c.A263G	p.H88R	GTGATCACCCAAA	.	127.0	37.0	114.0	0.0	.	549
SMARCD2	6603	hgsc.bcm.edu;bcgsc.ca	37	17	61914400	61914400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SMARCD2	NM_001098426	exon4	c.G449A	p.R150Q	AGCTCCCGGATCT	.	71.0	4.0	77.0	0.0	.	227
SMC6	79677	hgsc.bcm.edu;bcgsc.ca	37	2	17922879	17922879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SMC6	NM_001142286	exon4	c.A238G	p.S80G	ACTTACTTCCATT	.	60.0	4.0	79.0	0.0	.	292
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84311120	84311120	+	Silent	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SNAP91	NM_001242792	exon15	c.A1194T	p.A398A	AATCTGTGCTTCA	.	177.0	109.0	260.0	0.0	.	23
SP3	6670	hgsc.bcm.edu;bcgsc.ca	37	2	174820457	174820457	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SP3	NM_003111	exon4	c.A783G	p.P261P	ATTTCCTGGCAGA	.	71.0	4.0	90.0	0.0	.	227
SPTLC3	55304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	13071736	13071736	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPTLC3	NM_018327	exon5	c.T613A	p.L205M	GGCACCTTGGATA	.	157.0	53.0	201.0	0.0	.	90
SQRDL	58472	hgsc.bcm.edu;bcgsc.ca	37	15	45965905	45965905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SQRDL	NM_021199	exon5	c.A560G	p.E187G	TCAAAGAGGGCAA	.	109.0	5.0	130.0	0.0	.	91
ST8SIA4	7903	hgsc.bcm.edu;bcgsc.ca	37	5	100222086	100222086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ST8SIA4	NM_175052	exon3	c.A464G	p.E155G	CCACATTCACTGT	.	169.0	7.0	201.0	0.0	.	153
STMN2	11075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	80553709	80553709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STMN2	NM_007029	exon3	c.T212C	p.L71S	GAACTTTAGCTTC	.	246.0	35.0	122.0	0.0	.	515
STX7	8417	hgsc.bcm.edu;bcgsc.ca	37	6	132796761	132796761	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STX7	NM_003569	exon3	c.T126C	p.P42P	ATCTTGAGGTGTT	.	62.0	4.0	63.0	0.0	.	90
SUPT6H	6830	hgsc.bcm.edu;bcgsc.ca	37	17	27025001	27025001	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SUPT6H	NM_003170	exon32	c.A4401G	p.E1467E	CAAGGAACTGCCC	.	58.0	4.0	47.0	0.0	.	93
TAF1	6872	hgsc.bcm.edu;bcgsc.ca	37	X	70601683	70601683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TAF1	NM_004606	exon9	c.A1511G	p.N504S	AGGACAATATCAT	.	70.0	4.0	111.0	0.0	.	900
TBCCD1	55171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	186272765	186272765	+	Missense_Mutation	SNP	C	C	T	rs148338731	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TBCCD1	NM_001134415	exon5	c.G968A	p.S323N	TCTGAGCTCTTAG	.	156.0	12.0	171.0	0.0	C|1.000;G|0.000	108
TDRKH	11022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151751633	151751633	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TDRKH	NM_001083965	exon5	c.A507G	p.L169L	TGATAGTAGTAAT	.	506.0	76.0	399.0	0.0	.	92
TEK	7010	hgsc.bcm.edu;bcgsc.ca	37	9	27213566	27213566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TEK	NM_000459	exon18	c.G2962A	p.G988S	TCCCGAGGTCAAG	.	72.0	4.0	92.0	0.0	.	1584
TEX101	83639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43920080	43920080	+	Silent	SNP	C	C	T	rs149972012		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TEX101	NM_031451	exon5	c.C63T	p.T21T	GGGAACCCCTCGT	.	158.0	70.0	192.0	0.0	C|1.000;T|0.000	91
TLR8	51311	hgsc.bcm.edu;bcgsc.ca	37	X	12938298	12938298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TLR8	NM_138636	exon2	c.A1139G	p.Q380R	TGTTCCAGGAACT	.	59.0	4.0	63.0	0.0	.	629
TMEM87A	25963	hgsc.bcm.edu;bcgsc.ca	37	15	42531866	42531866	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TMEM87A	NM_015497	exon9	c.684+2T>C	.	TCACTTACAATCA	.	82.0	4.0	99.0	0.0	.	91
TMEM95	339168	hgsc.bcm.edu;bcgsc.ca	37	17	7259191	7259191	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TMEM95	NM_198154	exon3	c.T261C	p.Y87Y	TTCATATTGGAGT	.	72.0	4.0	130.0	0.0	.	90
TRIM23	373	hgsc.bcm.edu;bcgsc.ca	37	5	64890421	64890421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM23	NM_033228	exon10	c.A1472G	p.H491R	TCGCTGTGTGCTT	.	74.0	4.0	85.0	0.0	.	230
TRIM29	23650	hgsc.bcm.edu;bcgsc.ca	37	11	120007994	120007994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM29	NM_012101	exon1	c.T746C	p.F249S	TCCTGGAACATGC	.	94.0	5.0	96.0	0.0	.	291
TRIM3	10612	hgsc.bcm.edu;bcgsc.ca	37	11	6471835	6471835	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM3	NM_001248006	exon10	c.T1887C	p.A629A	GTTCACAGCCACA	.	101.0	5.0	84.0	0.0	.	714
TRIML1	339976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	189068092	189068092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIML1	NM_178556	exon6	c.G973A	p.D325N	AGATTTGACCAGT	.	109.0	5.0	127.0	0.0	.	156
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	98609873	98609873	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRRAP	NM_001244580	exon72	c.C11475T	p.L3825L	CAACCTCGCCCAG	.	63.0	12.0	81.0	0.0	.	923
TSHZ1	10194	hgsc.bcm.edu;bcgsc.ca	37	18	72998514	72998514	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TSHZ1	NM_005786	exon2	c.A1017G	p.K339K	TCAGAAAGCAGCG	.	66.0	5.0	97.0	0.0	.	90
UGDH	7358	hgsc.bcm.edu;bcgsc.ca	37	4	39510222	39510222	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UGDH	NM_003359	exon7	c.T870C	p.A290A	ATTCAGAGCCTCA	.	50.0	4.0	84.0	0.0	.	156
UHRF2	115426	hgsc.bcm.edu;bcgsc.ca	37	9	6493855	6493855	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UHRF2	NM_152896	exon10	c.A1527G	p.G509G	CACTGGAAGCGGT	.	74.0	4.0	120.0	0.0	.	721
UQCR10	29796	hgsc.bcm.edu;bcgsc.ca	37	22	30165668	30165668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UQCR10	NM_013387	exon2	c.A152G	p.K51R	TGCAGAAGCTGTG	.	134.0	6.0	154.0	0.0	.	23
VPS13A	23230	hgsc.bcm.edu;bcgsc.ca	37	9	79960046	79960046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VPS13A	NM_001018038	exon52	c.A7277G	p.Q2426R	TTGTTCAATACAA	.	88.0	4.0	104.0	0.0	.	161
VPS37C	55048	hgsc.bcm.edu;bcgsc.ca	37	11	60900811	60900811	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VPS37C	NM_017966	exon5	c.266-2A>G	.	TTTCTCTGGAAGG	.	61.0	4.0	69.0	0.0	.	90
VSTM1	284415	hgsc.bcm.edu;bcgsc.ca	37	19	54545427	54545427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VSTM1	NM_198481	exon6	c.A511G	p.K171E	ACCTCTTGGTGGA	.	92.0	4.0	123.0	0.0	.	90
VSTM4	196740	hgsc.bcm.edu;bcgsc.ca	37	10	50256529	50256529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VSTM4	NM_001031746	exon6	c.G769A	p.A257T	CTTTGGCAGGGAC	.	51.0	4.0	87.0	0.0	.	154
WDFY3	23001	hgsc.bcm.edu;bcgsc.ca	37	4	85731416	85731416	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDFY3	NM_014991	exon14	c.T1969C	p.L657L	CGAGCAAGGATGT	.	47.0	4.0	87.0	0.0	.	93
WDR27	253769	hgsc.bcm.edu;bcgsc.ca	37	6	170002368	170002368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR27	NM_182552	exon23	c.A2371G	p.I791V	AAGCGATTCCACA	.	72.0	5.0	57.0	0.0	.	69
WDR31	114987	hgsc.bcm.edu;bcgsc.ca	37	9	116079110	116079110	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR31	NM_001012361	exon11	c.T1023C	p.C341C	ACTTGCACACAAT	.	56.0	4.0	90.0	0.0	.	90
WDR78	79819	broad.mit.edu;bcgsc.ca	37	1	67306354	67306354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR78	NM_207014	exon9	c.A1292G	p.E431G	TCAGGTTCTAAAG	.	93.0	5.0	151.0	0.0	.	92
XPO7	23039	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	21848326	21848326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	XPO7	NM_015024	exon18	c.A1937G	p.E646G	AGAGCGAGCACTT	.	21.0	4.0	88.0	0.0	.	273
YTHDC2	64848	hgsc.bcm.edu;bcgsc.ca	37	5	112927702	112927702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	YTHDC2	NM_022828	exon28	c.A4039G	p.R1347G	TTTTCTAGGATGT	.	87.0	4.0	84.0	0.0	.	92
ZC2HC1B	153918	hgsc.bcm.edu;bcgsc.ca	37	6	144207245	144207245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001013623	exon3	c.A167G	p.Q56R	GATTACAGGGCAC	.	111.0	5.0	154.0	0.0	.	.
ZC3H12B	340554	hgsc.bcm.edu;bcgsc.ca	37	X	64709115	64709115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZC3H12B	NM_001010888	exon1	c.T434C	p.L145P	CAGAGCTTGTCAG	.	74.0	4.0	78.0	0.0	.	131
ZEB2	9839	hgsc.bcm.edu;bcgsc.ca	37	2	145162558	145162558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZEB2	NM_014795	exon5	c.A437G	p.E146G	AAGTATTCCTCAA	.	95.0	4.0	95.0	0.0	.	297
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	77616406	77616406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZFHX4	NM_024721	exon2	c.A83G	p.D28G	AACTTGATAATGA	.	281.0	27.0	182.0	0.0	.	98
ZFP1	162239	hgsc.bcm.edu;bcgsc.ca	37	16	75203861	75203861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZFP1	NM_153688	exon4	c.A853G	p.T285A	CTCACCACACACC	.	81.0	4.0	118.0	0.0	.	92
ZNF215	7762	hgsc.bcm.edu;bcgsc.ca	37	11	6977409	6977409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF215	NM_013250	exon7	c.C1201T	p.H401Y	ATCATTCACACAG	.	76.0	4.0	68.0	0.0	.	514
ZNF470	388566	hgsc.bcm.edu;bcgsc.ca	37	19	57088312	57088312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF470	NM_001001668	exon6	c.A515G	p.D172G	AAAGAGATCACTC	.	132.0	6.0	156.0	0.0	.	92
ZNF860	344787	hgsc.bcm.edu;bcgsc.ca	37	3	32032133	32032133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF860	NM_001137674	exon2	c.A1562G	p.Q521R	TTAATCAACAAGC	.	107.0	5.0	141.0	0.0	.	1
ZNF92	168374	hgsc.bcm.edu;bcgsc.ca	37	7	64864692	64864692	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF92	NM_152626	exon4	c.T1665C	p.H555H	TACACATCAGATA	.	82.0	4.0	106.0	0.0	.	514
EXOG	9941	hgsc.bcm.edu;bcgsc.ca	37	3	38539163	38539164	+	Missense_Mutation	DNP	AA	AA	TT	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	p.LT69FS	CCCTTTAACTGGA	.	81.0	5.0	115.0	0.0	.	.
ZNF716	441234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	57522850	57522851	+	Missense_Mutation	DNP	AA	AA	TT	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	.	.	.	p.N80F	AAGAGAAATGAGA	.	34.0	9.0	41.0	0.0	.	.