Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADAM12	8038	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127760154	127760154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ADAM12	NM_021641	exon12	c.G1224A	p.M408I	CACCCCCATTCCT	.	176.0	88.0	180.0	1.0	.	716
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175896738	175896738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ADAM29	NM_001130703	exon4	c.A62C	p.Q21P	ACATCCAGGATGA	.	142.0	55.0	138.0	0.0	.	729
ALG1	56052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5127503	5127503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ALG1	NM_019109	exon5	c.G597A	p.M199I	TGCTATGCGAGAA	.	99.0	35.0	104.0	0.0	.	92
ASB6	140459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132400301	132400301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ASB6	NM_017873	exon6	c.A1034C	p.N345T	TCGAAGTTTTCGG	.	67.0	31.0	53.0	0.0	.	226
ATXN7	6314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	63982027	63982027	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ATXN7	NM_000333	exon12	c.G2529A	p.S843S	CAGCTCGAGCAGC	.	235.0	11.0	262.0	0.0	.	90
BAZ1A	11177	broad.mit.edu;bcgsc.ca	37	14	35231375	35231375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	BAZ1A	NM_013448	exon24	c.A3831C	p.K1277N	GCTAAGTTTCCCT	.	211.0	11.0	181.0	1.0	.	291
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1251935	1251935	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CACNA1H	NM_021098	exon9	c.G1485A	p.V495V	TGCTGTGCAAGGC	.	40.0	20.0	45.0	0.0	.	67
CCR10	2826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	40831634	40831634	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CCR10	NM_016602	exon2	c.C1026T	p.R342R	GGGCCGGCGGGGG	.	43.0	20.0	31.0	0.0	.	522
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61990961	61990961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CHRNA4	NM_000744	exon2	c.C167T	p.A56V	ATGTTGGCCACGG	.	109.0	37.0	110.0	0.0	.	91
CPAMD8	27151	hgsc.bcm.edu;bcgsc.ca	37	19	17115180	17115180	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CPAMD8	NM_015692	exon8	c.C717T	p.S239S	GGGGAAGCTCATG	.	99.0	27.0	103.0	0.0	.	141
CPAMD8	27151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17115174	17115174	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CPAMD8	NM_015692	exon8	c.723delC	p.P241fs	GGACAAGGGGAAG	.	106.0	26.0	115.0	0.0	.	141
CSRP3	8048	hgsc.bcm.edu;broad.mit.edu	37	11	19204231	19204231	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CSRP3	NM_003476	exon7	c.G571T	p.E191X	TCTTTTCCACTTG	.	164.0	8.0	166.0	0.0	.	90
CTC1	80169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8141349	8141349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CTC1	NM_025099	exon4	c.G647A	p.R216K	AATTACCTGAGCC	.	83.0	24.0	76.0	0.0	.	93
CTSE	1510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206325312	206325312	+	Silent	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CTSE	NM_001910	exon5	c.A537C	p.A179A	GGATGCAGAGTTT	.	288.0	111.0	253.0	0.0	.	91
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	113898777	113898777	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CUL4A	NM_001008895	exon12	c.G1282T	p.E428X	GACGAGGAGCTGG	.	243.0	97.0	201.0	0.0	.	651
CWC25	54883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	36977155	36977155	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_017748	exon2	c.A190T	p.K64X	CTTACTTGACGGC	.	146.0	51.0	122.0	0.0	.	.
CYP2A6	1548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	41354235	41354235	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	CYP2A6	NM_000762	exon4	c.C543G	p.V181V	GCTGATGACATTG	.	354.0	138.0	284.0	0.0	.	92
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	155157679	155157679	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	DCHS2	NM_017639	exon25	c.G6760T	p.E2254X	CCTTCTCATTTCC	.	73.0	27.0	92.0	0.0	.	94
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84777070	84777070	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	DNAH6	NM_001370	exon9	c.T1374C	p.N458N	GGTAAATGCTGTT	.	111.0	18.0	107.0	0.0	.	69
DYSF	8291	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71755439	71755439	+	Missense_Mutation	SNP	G	G	T	rs144202114	byfrequency;alternate_allele	TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	DYSF	NM_001130982	exon14	c.G1288T	p.V430L	GATGCCGTGATGG	.	106.0	43.0	107.0	0.0	G|0.996;A|0.004	158
ELN	2006	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	73477959	73477959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ELN	NM_001081754	exon29	c.G1942A	p.G648R	CTAGTGGGAGCCG	.	479.0	27.0	345.0	0.0	.	95
ENOPH1	58478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83378171	83378171	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ENOPH1	NM_021204	exon5	c.T626G	p.F209C	TTTTGTTTCTGAC	.	176.0	55.0	168.0	0.0	.	22
ESCO1	114799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19144186	19144186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ESCO1	NM_052911	exon7	c.C1799A	p.T600N	TCATCAGTTTTCT	.	141.0	35.0	180.0	0.0	.	90
FAM192A	80011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57206205	57206205	+	Silent	SNP	C	C	T	rs180702754		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FAM192A	NM_024946	exon4	c.G306A	p.K102K	TCGTTGCTTTTCT	.	191.0	52.0	211.0	0.0	C|0.999;T|0.001	90
FAM69B	138311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139617874	139617874	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FAM69B	NM_152421	exon5	c.A944C	p.D315A	TGGCCGACCTGCA	.	38.0	8.0	47.0	0.0	.	90
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	72347203	72347204	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FCHO2	NM_138782	exon12	c.967_968insA	p.Y323_S324delinsX	GAAGGCTACAGTA	.	82.0	16.0	116.0	0.0	.	23
FKBP15	23307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	115938874	115938876	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FKBP15	NM_015258	exon21	c.2164_2166del	p.722_722del	GGATGTCACCTTG	.	319.0	101.0	315.0	0.0	.	25
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109261510	109261510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FNDC7	NM_001144937	exon4	c.T437G	p.I146S	TGTCCATTATGCG	.	197.0	75.0	227.0	0.0	.	92
FOXJ2	55810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8205442	8205442	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FOXJ2	NM_018416	exon11	c.C1721G	p.T574S	TGATCACTTAGTG	.	69.0	28.0	62.0	0.0	.	230
FURIN	5045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91423938	91423938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	FURIN	NM_002569	exon14	c.C1574T	p.A525V	ACTCCGCAGATGG	.	114.0	41.0	137.0	0.0	.	1083
GATC	283459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120884359	120884359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GATC	NM_176818	exon1	c.C76T	p.P26S	GCGGATCCTCAGG	.	58.0	6.0	54.0	0.0	.	22
GBP5	115362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89735097	89735097	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GBP5	NM_052942	exon3	c.C142G	p.R48G	CAGTGCGATAGAG	.	378.0	150.0	344.0	0.0	.	91
GFM2	84340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74026206	74026206	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GFM2	NM_032380	exon17	c.G1605C	p.M535I	CTCCCCCATACCA	.	133.0	53.0	139.0	0.0	.	90
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42005030	42005030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	GLI3	NM_000168	exon15	c.A3641C	p.Q1214P	AGGGTCTGATAGC	.	85.0	24.0	76.0	0.0	.	1149
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121431506	121431506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	HNF1A,NS,other,0	HNF1A	NM_000545	exon3	c.A710G	p.N237S	AGTGCAATAGGTA	.	70.0	28.0	60.0	0.0	.	1745
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	121426820	121426820	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HNF1A	NM_000545	exon2	c.C511T	p.R171X	AAGCAGCGAGAGG	.	81.0	30.0	81.0	0.0	.	1745
HTR7	3363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	92509305	92509305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HTR7	NM_019860	exon2	c.G586T	p.G196W	ATTTCCCATTCTG	.	137.0	52.0	92.0	0.0	.	91
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3190808	3190808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HTT	NM_002111	exon40	c.A5356G	p.I1786V	ATCCACATCTTCA	.	288.0	112.0	255.0	0.0	.	281
HYAL3	8372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50332788	50332788	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	HYAL3	NM_001200030	exon2	c.C246T	p.P82P	AAAGTAGGGATAG	.	61.0	18.0	86.0	0.0	.	279
IDS	3423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148582537	148582537	+	Silent	SNP	C	C	T	rs201892132		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	IDS	NM_006123	exon4	c.G450A	p.P150P	GCTATACGGAGAA	.	99.0	41.0	95.0	0.0	.	130
ITFG2	55846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2933099	2933099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ITFG2	NM_018463	exon11	c.G1230T	p.E410D	GCAGGAGCTGGGC	.	85.0	33.0	83.0	0.0	.	90
ITGA9	3680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37695227	37695227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ITGA9	NM_002207	exon17	c.G1862A	p.R621H	ATTGCCGTTCAGA	.	164.0	61.0	179.0	0.0	.	715
ITK	3702	broad.mit.edu;bcgsc.ca	37	5	156675955	156675955	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ITK	NM_005546	exon16	c.T1729C	p.L577L	TTTCGGTTGTACA	.	85.0	6.0	68.0	1.0	.	1427
JHDM1D	80853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139798778	139798778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	JHDM1D	NM_030647	exon14	c.G1819A	p.E607K	CCTCTTCATTTTC	.	444.0	107.0	341.0	2.0	.	91
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	123987858	123987858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	KALRN	NM_003947	exon5	c.C719T	p.A240V	TGAAGGCCCCTGT	.	230.0	17.0	195.0	0.0	.	738
KPNB1	3837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45757446	45757446	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	KPNB1	NM_002265	exon20	c.T2414T	p.I805I	ACATTGCTGGAGA	.	111.0	8.0	110.0	0.0	.	229
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	33670561	33670561	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	LARGE	NM_004737	exon16	c.A2123T	p.H708L	GGGGCATGAGGCA	.	149.0	53.0	146.0	0.0	.	92
LCNL1	401562	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139878137	139878137	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_207510	exon1	c.G99T	p.L33L	TGACCTGGCCCTC	.	159.0	54.0	158.0	1.0	.	.
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	33172789	33172789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	LTBP1	NM_206943	exon1	c.A398G	p.K133R	TCACCAAACAAGG	.	70.0	19.0	56.0	0.0	.	230
LUZP2	338645	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	25100161	25100161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	LUZP2	NM_001009909	exon12	c.C998A	p.T333N	CATTGACCAGCTT	.	71.0	23.0	70.0	1.0	.	92
MAN2B2	23324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	6595009	6595009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MAN2B2	NM_015274	exon6	c.G790A	p.E264K	TATGCCGAGGCCC	.	112.0	7.0	125.0	0.0	.	92
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141726934	141726934	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MGAM	NM_004668	exon9	c.G1002T	p.A334A	GCCTGCGCCAGCC	.	183.0	55.0	101.0	0.0	.	70
MICAL3	57553	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	18300440	18300440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MICAL3	NM_015241	exon26	c.C4987G	p.L1663V	GCTTCAGGGTGGG	.	55.0	19.0	58.0	0.0	.	68
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49425236	49425236	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MLL2	NM_003482	exon39	c.13252delG	p.E4418fs	GAGGTTCCTGCTT	.	99.0	34.0	137.0	0.0	.	612
MLL5	55904	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	104747073	104747073	+	Missense_Mutation	SNP	A	A	G	rs200234811	alternate_allele	TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	MLL5	NM_018682	exon19	c.A2701G	p.T901A	ACTCACACCGATA	.	208.0	59.0	166.0	1.0	.	93
NDST1	3340	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149927947	149927947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	NDST1	NM_001543	exon12	c.C2313A	p.N771K	CGCCAACCAGGTA	.	33.0	12.0	33.0	1.0	.	136
NLRP10	338322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7981809	7981809	+	Silent	SNP	G	G	A	rs56052845		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	NLRP10	NM_176821	exon2	c.C1350T	p.N450N	GTAGTCGTTACTA	.	65.0	21.0	69.0	0.0	.	209
OR8D4	338662	broad.mit.edu;bcgsc.ca	37	11	123777431	123777431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	OR8D4	NM_001005197	exon1	c.T293C	p.M98T	GATGCATGATTCA	.	125.0	7.0	145.0	1.0	.	69
OR8G5	219865	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	124135110	124135110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_001005198	exon1	c.C388A	p.P130T	TCCTACCCTGAAT	.	283.0	116.0	321.0	0.0	.	.
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134075516	134075516	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PCDH10	NM_032961	exon2	c.A2686C	p.N896H	CGAGTTAACAGGT	.	174.0	59.0	183.0	0.0	.	92
PCDHA5	56143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140203294	140203294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PCDHA5	NM_018908	exon1	c.G1934A	p.R645H	GCCACCGCCTTCT	.	275.0	97.0	208.0	0.0	.	137
PLEKHS1	79949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115528632	115528632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_024889	exon6	c.A418G	p.T140A	AAAGCAACACAGC	.	50.0	13.0	72.0	0.0	.	.
PLTP	5360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44531198	44531198	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PLTP	NM_006227	exon11	c.C988G	p.L330V	GGGCCAGGACCCG	.	164.0	64.0	203.0	0.0	.	91
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24744103	24744103	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	POLA1	NM_016937	exon13	c.G1305T	p.V435V	GCCAGTGGAAAAG	.	444.0	185.0	414.0	0.0	.	229
POLK	51426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74872759	74872759	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	POLK	NM_016218	exon6	c.694+1G>C	.	AAAATGGTAAGCA	.	64.0	24.0	84.0	0.0	.	229
PPAP2C	8612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	288028	288028	+	Missense_Mutation	SNP	C	C	T	rs148329482		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PPAP2C	NM_177543	exon2	c.G259A	p.V87I	GGATGACGGTGGC	.	162.0	66.0	169.0	0.0	C|0.999;T|0.001	90
PRELID2	153768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145176020	145176020	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PRELID2	NM_182960	exon6	c.A495C	p.R165R	TCCCTGTCGTAAG	.	45.0	20.0	62.0	0.0	.	90
PTPRG	5793	broad.mit.edu;bcgsc.ca	37	3	62240818	62240818	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	PTPRG	NM_002841	exon16	c.T2487C	p.P829P	CATTCCTGTCAAA	.	107.0	8.0	118.0	0.0	.	419
RALY	22913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32664559	32664559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RALY	NM_016732	exon7	c.C596T	p.S199F	TCAAGTCCAATAT	.	88.0	38.0	91.0	0.0	.	91
ROR1	4919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	64644486	64644486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ROR1	NM_005012	exon9	c.G2762A	p.G921E	TACTAGGAGACGC	.	197.0	83.0	236.0	0.0	.	1536
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10469481	10469481	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RP1L1	NM_178857	exon4	c.G2127A	p.S709S	GGTGCTCGATGAG	.	113.0	45.0	90.0	0.0	.	139
RPS6KA4	8986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64128041	64128041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	RPS6KA4	NM_001006944	exon4	c.C439A	p.L147M	ATCGTGCTGGCCC	.	94.0	42.0	102.0	0.0	.	1036
SECISBP2L	9728	hgsc.bcm.edu;broad.mit.edu	37	15	49284998	49284999	+	In_Frame_Ins	INS	-	-	TGGGGGTGTGTCAAATGGAAGTTG	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SECISBP2L	NM_001193489	exon18	c.2749_2750insCAACTTCCATTTGACACACCCCCA	p.I917delinsQLPFDTPPI	TACCAATTGGGGG	.	157.0	14.0	190.0	0.0	.	136
SETD1A	9739	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30976057	30976057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SETD1A	NM_014712	exon7	c.G994A	p.A332T	ACCACTGCAGCCA	.	160.0	54.0	154.0	1.0	.	93
SH2B1	25970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28877909	28877909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	SH2B1	NM_001145796	exon2	c.C494T	p.S165L	GAGGCTCAGTCCG	.	57.0	22.0	51.0	0.0	.	92
TACR3	6870	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104640561	104640561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TACR3	NM_001059	exon1	c.C272T	p.A91V	CCATACGCCAGGG	.	167.0	46.0	137.0	1.0	.	525
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	8006861	8006861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TAF3	NM_031923	exon3	c.C1388T	p.S463L	ATAACTCATGGAC	.	109.0	39.0	108.0	0.0	.	69
TAF5	6877	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105142994	105142994	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TAF5	NM_006951	exon7	c.1535-1G>C	.	ATTTTAGATCTTA	.	158.0	66.0	191.0	1.0	.	92
TCTN2	79867	broad.mit.edu;bcgsc.ca	37	12	124184293	124184293	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TCTN2	NM_024809	exon14	c.T1548C	p.T516T	AGCGACTCACGTT	.	105.0	7.0	109.0	0.0	.	91
TFEB	7942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41655675	41655675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	TFEB,NS,carcinoma,+1	TFEB	NM_001167827	exon5	c.C683T	p.A228V	AGGTCCGCAGGGC	.	205.0	78.0	215.0	1.0	.	659
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2582881	2582881	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TMC2	NM_080751	exon11	c.C1347T	p.Y449Y	CATTTACTTTGTG	.	236.0	73.0	252.0	0.0	.	93
TMEM219	124446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29979380	29979380	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TMEM219	NM_001083613	exon4	c.C390T	p.A130A	CACAGCCAGGGTG	.	116.0	49.0	109.0	0.0	.	90
TRIM67	440730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231337125	231337125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TRIM67	NM_001004342	exon5	c.C1396T	p.R466C	ATCAAGCGCGTCC	.	133.0	48.0	113.0	0.0	.	229
TRIP4	9325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	64701814	64701814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	TRIP4	NM_016213	exon7	c.T830C	p.I277T	TCAGTATTCGAAG	.	149.0	11.0	127.0	0.0	.	188
URB2	9816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	229794870	229794870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	URB2	NM_014777	exon10	c.A4401C	p.K1467N	TGTGAAAAGTCTG	.	85.0	5.0	87.0	0.0	.	174
VAMP1	6843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6575451	6575451	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	VAMP1	NM_014231	exon2	c.C69T	p.G23G	AGGAGGGCCAGGG	.	118.0	48.0	101.0	1.0	.	90
WT1	7490	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	32421555	32421555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	WT1	NM_024424	exon6	c.C1037T	p.T346M	ATGGGCGTTGTGT	.	261.0	11.0	269.0	0.0	.	6891
ZDHHC17	23390	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	77158072	77158072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_015336	exon1	c.A56G	p.D19G	AGTACGATACCGA	.	51.0	18.0	66.0	0.0	.	.
ZFAND4	93550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	46111982	46111982	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	.	NM_001128324	exon10	c.G2086C	p.E696Q	GAGTTTCTGCATA	.	228.0	71.0	224.0	0.0	.	.
ZNF142	7701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219513586	219513586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZNF142	NM_001105537	exon6	c.G1045T	p.D349Y	CAAAATCACAGTG	.	143.0	53.0	97.0	0.0	.	137
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22807281	22807281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZNF521	NM_015461	exon4	c.C601A	p.P201T	TATATGGCTTGTT	.	258.0	90.0	271.0	0.0	.	275
ZNF611	81856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53208756	53208756	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A2-01A-11D-A20W-10	TCGA-DD-A3A2-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1b32c222-05fb-4c01-ab8a-be3e922002e7	cefe8443-c2b3-4fd4-a429-423b1e389d33	.	ZNF611	NM_030972	exon7	c.G1552C	p.V518L	TGAAAACCTTTTC	.	138.0	60.0	143.0	0.0	.	91