Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ATG16L1 55054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 234171807 234171807 + Missense_Mutation SNP C C G novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . ATG16L1 NM_017974 exon3 c.C241G p.Q81E GACAATCAGCTAC . 59.0 17.0 94.0 0.0 . 90 C1orf94 84970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 34667861 34667861 + Splice_Site SNP G G T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . C1orf94 NM_032884 exon4 c.876+1G>T . TATCAGGTCAGTG . 77.0 27.0 103.0 0.0 . 90 C2orf44 80304 broad.mit.edu;bcgsc.ca 37 2 24262242 24262242 + Silent SNP A A G novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . C2orf44 NM_025203 exon2 c.T123C p.L41L ACTGTGAAGCCGC . 108.0 6.0 123.0 0.0 . 154 C8orf86 389649 broad.mit.edu;bcgsc.ca 37 8 38370074 38370074 + Missense_Mutation SNP A A G novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . C8orf86 NM_207412 exon3 c.T503C p.L168P AAGCAGAGAGGAC . 89.0 5.0 82.0 0.0 . 90 CA3 761 broad.mit.edu;bcgsc.ca 37 8 86360370 86360370 + Silent SNP T T C novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . CA3 NM_005181 exon7 c.T771C p.A257A GAGAGCTTCCTTC . 77.0 5.0 72.0 0.0 . 514 CMYA5 202333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 79035108 79035108 + Missense_Mutation SNP C C A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . CMYA5 NM_153610 exon2 c.C10520A p.S3507Y AAAAGTCCCAGAT . 96.0 38.0 51.0 0.0 . 77 CORO1C 23603 ucsc.edu;bcgsc.ca 37 12 109055931 109055931 + Silent SNP A A G novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . CORO1C NM_014325 exon4 c.C322C p.P108P TCTGCCATACCTG . 45.0 4.0 35.0 0.0 . 228 CSMD1 64478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 2876120 2876120 + Silent SNP C C T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . CSMD1 NM_033225 exon52 c.G7908A p.T2636T TGTCAACGTTCCA . 71.0 25.0 76.0 0.0 . 86 CTDNEP1 23399 ucsc.edu;bcgsc.ca 37 17 7150596 7150596 + Missense_Mutation SNP C C T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . CTDNEP1 NM_001143775 exon2 c.G169A p.A57T ACTTACCTAGCCG . 70.0 6.0 97.0 0.0 . 91 CTNNB1 1499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 41268766 41268766 + Missense_Mutation SNP A A T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 CTNNB1,NS,Wilms_tumour,0 CTNNB1 NM_001098209 exon7 c.A1004T p.K335I ACGAAAAACTACT . 76.0 33.0 113.0 0.0 . 24361 CUX2 23316 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 111746258 111746258 + Missense_Mutation SNP C C A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . CUX2 NM_015267 exon14 c.C1186A p.L396I TCACTGCTTATTG . 88.0 41.0 103.0 0.0 . 140 DNAH11 8701 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 21657266 21657266 + Silent SNP C C T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . DNAH11 . . . . AGTCCGCGTCTGG . 49.0 17.0 73.0 0.0 . 146 DTX3 196403 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 58001190 58001190 + Missense_Mutation SNP C C T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . DTX3 NM_178502 exon5 c.C544T p.H182Y TGCCGGCATTCAT . 85.0 35.0 89.0 0.0 . 1083 EIF2B5 8893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 183855595 183855595 + Splice_Site SNP T T A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . EIF2B5 NM_003907 exon3 c.506+2T>A . CACAGGTCAGGAT . 119.0 47.0 108.0 0.0 . 95 ELOVL7 79993 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 60083199 60083199 + Missense_Mutation SNP C C A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . ELOVL7 NM_001104558 exon2 c.G26T p.R9M ACAGTCCTCGATG . 54.0 28.0 73.0 0.0 . 90 EPHA6 285220 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 96706703 96706703 + Missense_Mutation SNP G G A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . EPHA6 NM_001080448 exon3 c.G980A p.R327Q AAGTACGGGGTTC . 120.0 47.0 138.0 2.0 . 1561 EPHX3 79852 broad.mit.edu;bcgsc.ca 37 19 15338688 15338688 + Missense_Mutation SNP T T C novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . EPHX3 NM_001142886 exon7 c.A751G p.T251A TGCCTGTCTTGCG . 86.0 4.0 78.0 0.0 . 90 FBXW8 26259 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 117465265 117465265 + Silent SNP G G A rs188048498 TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . FBXW8 NM_153348 exon10 c.G1608A p.T536T CCAGACGGTAATG . 37.0 18.0 30.0 0.0 G|0.999;A|0.001 229 GGN 199720 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 38877740 38877740 + Silent SNP G G A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . GGN NM_152657 exon3 c.C162T p.S54S TGTGGCGCTGCCA . 20.0 4.0 25.0 0.0 . 90 GPAM 57678 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 113913361 113913364 + Frame_Shift_Del DEL GAGG GAGG - novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 GAGG GAGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . GPAM NM_020918 exon22 c.2431_2434del p.811_812del TGCATTGAGGTAG . 59.0 21.0 68.0 0.0 . 92 GUSB 2990 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 65435332 65435332 + Silent SNP T T C novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . GUSB NM_000181 exon9 c.A1413G p.K471K CAAGGATTTGGTG . 34.0 13.0 31.0 0.0 . 90 H2AFY2 55506 hgsc.bcm.edu;bcgsc.ca 37 10 71835423 71835423 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . H2AFY2 NM_018649 exon2 c.9delC p.G3fs GTCGGGCCGGAGT . 90.0 22.0 119.0 0.0 . 91 HPS1 3257 ucsc.edu;bcgsc.ca 37 10 100183612 100183612 + Missense_Mutation SNP T T C novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . HPS1 NM_000195 exon15 c.A1430G p.Q477R CAGAGCTGCCGCT . 40.0 4.0 63.0 0.0 . 91 ITGA4 3676 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 182350624 182350624 + Missense_Mutation SNP C C T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . ITGA4 NM_000885 exon10 c.C1058T p.A353V TGAATGCAATGGA . 127.0 46.0 129.0 0.0 . 230 ITGB8 3696 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 20418810 20418810 + Missense_Mutation SNP A A T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . ITGB8 NM_002214 exon4 c.A525T p.R175S ATCTAGAAAAATG . 104.0 47.0 113.0 0.0 . 227 KIAA1211L 343990 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 99454679 99454679 + Missense_Mutation SNP A A G novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . . NM_207362 exon3 c.T142C p.S48P CTGTGGACGACGG . 123.0 59.0 96.0 1.0 . . KIAA1468 57614 hgsc.bcm.edu;bcgsc.ca 37 18 59947916 59947948 + In_Frame_Del DEL ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA - novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . KIAA1468 NM_020854 exon24 c.3088_3114del p.1030_1038del GGCACTATTATGG . 72.0 19.0 87.0 0.0 . 158 KIFAP3 22920 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 170007568 170007568 + Missense_Mutation SNP T T A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . KIFAP3 NM_014970 exon5 c.A380T p.D127V ACTTCATCAATCT . 150.0 46.0 135.0 0.0 . 91 KIFC1 3833 broad.mit.edu;bcgsc.ca 37 6 33372736 33372736 + Silent SNP A A G novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . KIFC1 NM_002263 exon7 c.A864G p.E288E GGAAGAACGTCTT . 131.0 6.0 98.0 0.0 . 90 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 25398281 25398281 + Missense_Mutation SNP C C T rs112445441 bycluster TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 KRAS,NS,carcinoma,-1 KRAS NM_004985 exon2 c.G38A p.G13D CCTACGCCACCAG . 138.0 65.0 190.0 0.0 . 92875 MIPEP 4285 ucsc.edu;bcgsc.ca 37 13 24330758 24330758 + Splice_Site SNP C C T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . MIPEP NM_005932 exon19 c.1971-1G>A . GCAGCCCTGGGGA . 44.0 4.0 42.0 0.0 . 90 MITF 4286 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 70014270 70014270 + Silent SNP C C A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . MITF NM_198159 exon10 c.C1434A p.I478I AGACATCCTGATG . 83.0 33.0 78.0 1.0 . 524 PALD1 27143 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 72301249 72301249 + Missense_Mutation SNP G G A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . . NM_014431 exon17 c.G2080A p.V694M GAGCTCGTGAGTG . 65.0 20.0 50.0 0.0 . . PGBD2 267002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 249211640 249211640 + Missense_Mutation SNP G G T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . PGBD2 NM_170725 exon3 c.G857T p.R286M TGCACAGGGGGAA . 122.0 60.0 119.0 0.0 . 91 PHF8 23133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 54044138 54044138 + Missense_Mutation SNP A A C novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . PHF8 NM_001184896 exon5 c.T518G p.L173R GAGGGCAGCGTCA . 57.0 42.0 63.0 0.0 . 133 PHKB 5257 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 47630379 47630379 + Missense_Mutation SNP T T A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . PHKB NM_000293 exon13 c.T1300A p.C434S AGCAACTGTGGCC . 167.0 43.0 175.0 0.0 . 154 PSIP1 11168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 15506558 15506558 + Splice_Site SNP C C A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . PSIP1 NM_001128217 exon4 c.149+1G>T . GACTTACGTCTCA . 58.0 14.0 47.0 0.0 . 658 PXDNL 137902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 52384855 52384855 + Missense_Mutation SNP C C T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . PXDNL NM_144651 exon8 c.G704A p.R235Q GTAATTCGGGGGC . 80.0 30.0 72.0 0.0 . 70 RGL1 23179 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 183885770 183885770 + Nonsense_Mutation SNP G G T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . RGL1 NM_015149 exon17 c.G2044T p.E682X CAGAATGAAGACA . 75.0 30.0 99.0 0.0 . 725 RGS22 26166 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 101054142 101054142 + Missense_Mutation SNP G G A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . RGS22 NM_015668 exon12 c.C1826T p.S609L TACTTTGACCTAA . 73.0 26.0 80.0 0.0 . 140 SP6 80320 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 45925436 45925436 + Missense_Mutation SNP C C A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . SP6 NM_001258248 exon2 c.G360T p.W120C GTCCCACCACGAG . 20.0 8.0 37.0 0.0 . 91 ST8SIA2 8128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 92988127 92988127 + Silent SNP C C T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . ST8SIA2 NM_006011 exon5 c.C810T p.Y270Y TGCATACCCCTCG . 41.0 19.0 43.0 0.0 . 90 TCF20 6942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 42608580 42608580 + Missense_Mutation SNP G G C novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . TCF20 NM_181492 exon1 c.C2732G p.P911R CCACCAGGAAGAA . 160.0 62.0 143.0 0.0 . 95 TJP1 7082 broad.mit.edu;bcgsc.ca 37 15 30025368 30025368 + Missense_Mutation SNP A A G novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . TJP1 NM_175610 exon13 c.T1666C p.S556P GCCAAGAGCCCAG . 121.0 5.0 114.0 0.0 . 95 TMEM132E 124842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 32959873 32959873 + Missense_Mutation SNP G G C novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . TMEM132E NM_207313 exon7 c.G1363C p.D455H CTCTCAGATGCCC . 64.0 14.0 43.0 0.0 . 68 UXT 8409 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 47516683 47516683 + Silent SNP A A G novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . UXT NM_153477 exon4 c.T291C p.D97D TGAAGTATCTGGG . 53.0 40.0 63.0 1.0 . 130 ZNF415 55786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 53612315 53612315 + Missense_Mutation SNP T T A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . ZNF415 NM_018355 exon4 c.A983T p.Y328F CATGTGTAAGGTT . 54.0 19.0 79.0 0.0 . 91 ZNF862 643641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 149557719 149557719 + Nonsense_Mutation SNP C C A novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . ZNF862 NM_001099220 exon7 c.C1470A p.C490X AGCCTGCATAGAA . 78.0 22.0 76.0 0.0 . 69 ZNF862 643641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 149557718 149557718 + Missense_Mutation SNP G G T novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . ZNF862 NM_001099220 exon7 c.G1469T p.C490F CAGCCTGCATAGA . 79.0 22.0 75.0 0.0 . 69 ZSCAN29 146050 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 43656356 43656356 + Missense_Mutation SNP T T G novel TCGA-DD-A3A4-01A-11D-A22F-10 TCGA-DD-A3A4-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f5d3f616-5fb1-47a0-9c01-f2fb90568df4 1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211 . ZSCAN29 NM_152455 exon4 c.A1447C p.T483P GACAGGTCTCTGG . 78.0 28.0 63.0 0.0 . 91