Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCC11	85320	ucsc.edu;bcgsc.ca	37	16	48242358	48242358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ABCC11	NM_033151	exon11	c.T1658C	p.L553P	GACAACAGGCTGC	.	35.0	4.0	55.0	0.0	.	95
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9630394	9630394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ADAM17	NM_003183	exon19	c.C2387T	p.T796M	TGGTCCGTGAGAT	.	133.0	61.0	153.0	0.0	.	659
ADAM22	53616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87780308	87780308	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ADAM22	NM_021722	exon19	c.A1579T	p.I527F	CCTAATATTCATA	.	220.0	83.0	314.0	0.0	.	230
ADAMTS3	9508	broad.mit.edu;bcgsc.ca	37	4	73176810	73176810	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ADAMTS3	NM_014243	exon14	c.T2010C	p.C670C	GTAAGAACAGTGC	.	118.0	5.0	167.0	0.0	.	651
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73679731	73679731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ALMS1	NM_015120	exon8	c.A6074G	p.K2025R	AGCCCAAGATTTC	.	80.0	33.0	136.0	0.0	.	142
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	73679798	73679798	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ALMS1	NM_015120	exon8	c.T6141A	p.Y2047X	TTCCTATTCTCAA	.	86.0	35.0	144.0	0.0	.	142
ALMS1	7840	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73679628	73679628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ALMS1	NM_015120	exon8	c.C5971A	p.H1991N	CATTCACATAAAG	.	96.0	32.0	123.0	2.0	.	142
AP1B1	162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29724846	29724846	+	Silent	SNP	G	G	A	rs147684584		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	AP1B1	NM_001127	exon23	c.C2814T	p.H938H	GTACACGTGCTGG	.	35.0	16.0	52.0	0.0	G|1.000;A|0.000	92
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21251239	21251240	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	APOB	NM_000384	exon13	c.1789_1790insT	p.I597fs	TGGCAATATGGGA	.	119.0	48.0	157.0	0.0	.	175
ARHGEF7	8874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111927941	111927941	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ARHGEF7	NM_001113511	exon13	c.C1398A	p.I466I	AGCCATCCGGAAC	.	118.0	32.0	117.0	0.0	.	232
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9508603	9508603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ASAP2	NM_001135191	exon16	c.G1511A	p.C504Y	AATGTTGCCTACC	.	78.0	30.0	86.0	0.0	.	90
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70228060	70228060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	AUTS2	NM_001127231	exon7	c.G947A	p.R316Q	AACTCCGAGCTCC	.	67.0	11.0	66.0	0.0	.	92
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32206014	32206014	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BAI2	NM_001703	exon12	c.C1923T	p.D641D	CAGAATGTCCACA	.	65.0	22.0	88.0	0.0	.	526
BBS9	27241	broad.mit.edu;bcgsc.ca	37	7	33192464	33192464	+	Splice_Site	SNP	G	G	A	rs137962929		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BBS9	NM_198428	exon3	c.263+1G>A	.	TGTTTCGTAAGTA	.	103.0	5.0	47.0	0.0	G|1.000;A|0.000	230
BECN1	8678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40962923	40962923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BECN1	NM_003766	exon12	c.T1208C	p.I403T	TCTTCAATCTTGC	.	47.0	32.0	43.0	0.0	.	228
BMP3	651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	81967179	81967179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BMP3	NM_001201	exon2	c.A604G	p.I202V	AAAGATATCACTC	.	47.0	23.0	76.0	0.0	.	518
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15367957	15367957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BRD4	NM_058243	exon8	c.A1369T	p.M457L	CCGGCATCTTGGC	.	25.0	8.0	30.0	0.0	.	767
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	40627715	40627715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BRWD1	NM_018963	exon19	c.A2111G	p.N704S	CCAATATTTGGAG	.	30.0	7.0	85.0	0.0	.	94
C16orf89	146556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5108602	5108602	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	C16orf89	NM_001098514	exon4	c.C519G	p.S173R	CTCGCTGCTGTCC	.	28.0	9.0	20.0	0.0	.	92
C17orf112	100506650	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	51063875	51063875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001243552	exon2	c.G119T	p.G40V	AGCTGGGAAACAT	.	250.0	60.0	189.0	0.0	.	.
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24564464	24564464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CABIN1	NM_001199281	exon33	c.A5732G	p.H1911R	AGGTCCATCTTGG	.	23.0	19.0	96.0	0.0	.	94
CASP8AP2	9994	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90562907	90562907	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CASP8AP2	NM_001137667	exon3	c.T78C	p.D26D	CAATGATGAAGGC	.	167.0	72.0	126.0	1.0	.	24
CD109	135228	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74492373	74492373	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CD109	NM_133493	exon18	c.2000delA	p.E667fs	TGGAGGAAAATGA	.	83.0	30.0	123.0	0.0	.	155
CDH6	1004	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	31294184	31294184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CDH6	NM_004932	exon3	c.G344A	p.R115K	CCAAGAGGCTGGA	.	143.0	12.0	112.0	0.0	.	159
CEACAM5	1048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42224926	42224926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CEACAM5	NM_004363	exon8	c.C1856T	p.S619F	CGGCCTCTAACCC	.	161.0	71.0	189.0	0.0	.	92
CELSR1	9620	hgsc.bcm.edu;bcgsc.ca	37	22	46807621	46807621	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CELSR1	NM_014246	exon6	c.G4647A	p.P1549P	CCCGGACGGCCCA	.	39.0	13.0	57.0	0.0	.	525
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71043463	71043463	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CLEC4F	NM_173535	exon4	c.C1050T	p.G350G	CAGACGGCCATTT	.	179.0	69.0	213.0	0.0	.	95
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51098538	51098538	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	COBL	NM_015198	exon9	c.C1475G	p.T492S	GCAAGGGTTTTAC	.	201.0	54.0	191.0	0.0	.	95
COL7A1	1294	ucsc.edu;bcgsc.ca	37	3	48606275	48606275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	COL7A1	NM_000094	exon103	c.A7700G	p.E2567G	CCAGGCTCTCCCT	.	44.0	4.0	43.0	0.0	.	160
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156727773	156727773	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CYFIP2	NM_001037332	exon6	c.C438G	p.A146A	CCATGCCGAGCGC	.	133.0	86.0	112.0	0.0	.	22
DIXDC1	85458	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111851539	111851539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DIXDC1	.	.	.	.	ATTTTGTGATTAT	.	73.0	34.0	114.0	0.0	.	91
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	51839582	51839582	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DMXL2	NM_001174117	exon7	c.G591A	p.W197X	AGGATACCACACT	.	67.0	14.0	72.0	0.0	.	99
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196682482	196682482	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DNAH7	NM_018897	exon50	c.A9363G	p.Q3121Q	CCTTTCTTGTGCC	.	135.0	42.0	84.0	0.0	.	102
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6579425	6579425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DNHD1	NM_144666	exon25	c.C8900T	p.P2967L	GTTTCCCTGGCCA	.	45.0	16.0	61.0	0.0	.	24
DSEL	92126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	65178248	65178248	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DSEL	NM_032160	exon2	c.A3628T	p.T1210S	TCAGAGTCCAGCA	.	104.0	36.0	140.0	0.0	.	157
ETF1	2107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137844022	137844022	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ETF1	NM_004730	exon11	c.A1286T	p.D429V	AATTCATCGTCTC	.	77.0	14.0	60.0	0.0	.	229
EVC2	132884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5578055	5578055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	EVC2	NM_147127	exon18	c.G3184T	p.G1062W	CCTCCCCAGGTTC	.	55.0	6.0	79.0	0.0	.	155
FAM122A	116224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71395649	71395649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FAM122A	NM_138333	exon1	c.C569A	p.P190H	AGAGCCCCATCAA	.	118.0	49.0	155.0	0.0	.	90
FOXI1	2299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169535372	169535372	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FOXI1	NM_012188	exon2	c.C894A	p.P298P	CCACCCCTTGGTC	.	128.0	29.0	109.0	0.0	.	229
GGNBP2	79893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34935776	34935776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GGNBP2	NM_024835	exon8	c.A947T	p.K316M	GGCAGAAGCTACG	.	197.0	39.0	114.0	0.0	.	70
GIN1	54826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102440400	102440400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GIN1	NM_017676	exon4	c.A484G	p.I162V	TGATTATAGCATA	.	166.0	36.0	151.0	0.0	.	92
GLB1L3	112937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134158769	134158769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GLB1L3	NM_001080407	exon7	c.G714A	p.M238I	ATACATGCCGTAT	.	28.0	11.0	38.0	0.0	.	69
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74487222	74487222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GLG1	NM_001145667	exon26	c.C3383T	p.A1128V	CCATCTGCTGGGG	.	94.0	39.0	108.0	0.0	.	136
GON4L	54856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155823310	155823310	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GON4L	NM_001037533	exon2	c.A262C	p.N88H	GTACATTTGTGTT	.	382.0	33.0	190.0	0.0	.	93
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67346716	67346716	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GPHN	NM_001024218	exon5	c.A354T	p.G118G	GATGGGATCACTT	.	42.0	29.0	118.0	0.0	.	228
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105789505	105789505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GRIA4	NM_001077243	exon11	c.A1337G	p.Y446C	AAGGATACTGTGT	.	81.0	32.0	121.0	0.0	.	230
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42965098	42965098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GRXCR1	NM_001080476	exon2	c.G574T	p.V192F	CGACGAGTTTCTG	.	158.0	34.0	228.0	0.0	.	23
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42965111	42965111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GRXCR1	NM_001080476	exon2	c.C587T	p.P196L	AAGCTCCTTCCCT	.	155.0	33.0	229.0	0.0	.	23
GTSF1L	149699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42355239	42355239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GTSF1L	NM_001008901	exon1	c.G96C	p.K32N	GGGGTTCTTTCTC	.	145.0	37.0	105.0	0.0	.	90
HK3	3101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176316669	176316669	+	Missense_Mutation	SNP	G	G	A	rs147991837	byfrequency	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HK3	NM_002115	exon7	c.C707T	p.P236L	TCACACGGCCTGA	.	87.0	11.0	62.0	0.0	G|1.000;A|0.000	294
HK3	3101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176308352	176308352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HK3	NM_002115	exon18	c.C2578A	p.L860M	CTGCCAGCTCTTC	.	84.0	21.0	59.0	0.0	.	294
HRH3	11255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60791849	60791849	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HRH3	NM_007232	exon3	c.C551G	p.P184R	CCCTCGGGGATGG	.	65.0	16.0	68.0	0.0	.	90
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152191055	152191055	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HRNR	NM_001009931	exon3	c.G3050C	p.G1017A	CCGGAACCAGACC	.	272.0	23.0	187.0	0.0	.	93
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122931847	122931847	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HSPA8	NM_006597	exon2	c.C186T	p.N62N	GGTGGGGTTCATT	.	44.0	6.0	62.0	0.0	.	654
IMMP1L	196294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	31482231	31482232	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IMMP1L	NM_144981	exon4	c.136_137insT	p.Q46fs	AATTTTGAATTGT	.	285.0	109.0	390.0	0.0	.	90
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1525069	1525069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001080453	exon23	c.G3013T	p.D1005Y	CCCCGTCCCGCAG	.	47.0	33.0	40.0	0.0	.	.
IQCA1	79781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237233372	237233372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IQCA1	NM_001270585	exon19	c.G2452A	p.G818S	TGCTGCCTCCTGT	.	80.0	67.0	83.0	1.0	.	23
IQCF1	132141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51937031	51937031	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IQCF1	NM_152397	exon2	c.T78C	p.H26H	GGACAAATGGGTT	.	240.0	84.0	296.0	0.0	.	91
IRAK1	3654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153278076	153278076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IRAK1	NM_001569	exon13	c.A1984G	p.I662V	GGTTGATGATAAT	.	59.0	16.0	68.0	0.0	.	1074
ITIH6	347365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	54800575	54800575	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_198510	exon6	c.A842C	p.E281A	TTCTTCTCCATAG	.	122.0	12.0	136.0	0.0	.	.
JMY	133746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78610232	78610232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	JMY	NM_152405	exon9	c.A2217C	p.E739D	GGGAGAAGGAAGA	.	160.0	70.0	131.0	0.0	.	227
KCNAB1	7881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	156234115	156234115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KCNAB1	NM_172160	exon11	c.G922A	p.G308R	AAATACGGAAACG	.	72.0	34.0	104.0	0.0	.	94
KDM8	79831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27225073	27225073	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_024773	exon3	c.665+1G>C	.	GTGGAGGTGGGTG	.	48.0	16.0	59.0	0.0	.	.
KIR2DL3	3804	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55253485	55253485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KIR2DL3	NM_015868	exon3	c.A130G	p.T44A	GAAGAGACAGTCA	.	52.0	46.0	44.0	0.0	.	92
KLHL7	55975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23207527	23207527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KLHL7	NM_001031710	exon9	c.T1250C	p.L417P	GCATGCTGACCCA	.	158.0	32.0	127.0	0.0	.	90
KRTAP10-7	386675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46021639	46021639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_198689	exon2	c.C1103T	p.S368F	AGAAGTCCAGCTG	.	30.0	12.0	70.0	0.0	.	.
KRTAP4-2	85291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39334360	39334360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KRTAP4-2	NM_033062	exon1	c.C57G	p.N19K	GCAGCAGTTCTCT	.	144.0	38.0	112.0	0.0	.	44
LACTB	114294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63419842	63419842	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LACTB	NM_171846	exon4	c.T906G	p.I302M	TTCAATTGAATCC	.	101.0	42.0	131.0	0.0	.	90
LCE6A	448835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152816050	152816050	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001128600	exon2	c.C54T	p.S18S	ATGCTCCCCTCCC	.	211.0	43.0	164.0	0.0	.	.
LGALS4	3960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39297124	39297124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LGALS4	NM_006149	exon4	c.G451A	p.G151R	GGCCTCCGATGAA	.	76.0	8.0	88.0	0.0	.	92
LMF1	64788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	904604	904604	+	Missense_Mutation	SNP	G	G	T	rs201312320	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LMF1	NM_022773	exon11	c.C1632A	p.F544L	CGGAGGGAAGTAG	.	34.0	16.0	36.0	0.0	G|0.998;A|0.002	90
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	40687370	40687370	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LRRK2	NM_198578	exon21	c.A2713T	p.K905X	CTTGTGAAAAAGA	.	138.0	101.0	118.0	0.0	.	533
LYZL1	84569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	29581509	29581509	+	Silent	SNP	C	C	T	rs141824789		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LYZL1	NM_032517	exon3	c.C339T	p.D113D	GGATGACGGCAGC	.	89.0	5.0	140.0	0.0	C|1.000;T|0.000	90
MB21D1	115004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	74161257	74161257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MB21D1	NM_138441	exon1	c.G648T	p.E216D	CACGTGCTCATAG	.	56.0	19.0	63.0	0.0	.	90
MIR600HG	81571	ucsc.edu;mdanderson.org	37	9	125873680	125873680	+	RNA	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	TGATCCATTTCCA	.	36.0	16.0	42.0	0.0	.	.
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49416062	49416062	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MLL2	NM_003482	exon53	c.16412+1G>T	.	CTCTCACCTGGCA	.	87.0	18.0	66.0	0.0	.	612
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	151970850	151970850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MLL3	NM_170606	exon7	c.C952A	p.Q318K	AATCCTGAAAGGT	.	334.0	20.0	484.0	0.0	.	1398
MSX2	4488	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	174151962	174151962	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MSX2	NM_002449	exon1	c.G300A	p.E100E	CTTCGAGACCGCC	.	35.0	7.0	39.0	0.0	.	90
MYCBP2	23077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	77740568	77740568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYCBP2	NM_015057	exon41	c.A6236G	p.Y2079C	GGTCCATATCCTG	.	168.0	46.0	138.0	1.0	.	236
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72338583	72338583	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYO9A	NM_006901	exon2	c.A322C	p.R108R	TCTCTCTCAGAAG	.	101.0	47.0	105.0	0.0	.	93
MYOD1	4654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	17742472	17742472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYOD1	NM_002478	exon2	c.C654A	p.S218R	CCCGAGCGGCGCC	.	40.0	24.0	41.0	0.0	.	154
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45124554	45124554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001146334	exon2	c.C1225T	p.P409S	CATGGGGCTCCCC	.	79.0	20.0	62.0	0.0	.	.
NCAPG	64151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17841380	17841380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NCAPG	NM_022346	exon17	c.T2548C	p.Y850H	CGAGTCTATACAA	.	77.0	22.0	131.0	0.0	.	153
NFATC2	4773	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	50048694	50048694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NFATC2	NM_012340	exon9	c.G2632A	p.G878R	GGGGTCCGTTTTT	.	155.0	11.0	169.0	0.0	.	92
NLRC5	84166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57054706	57054706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NLRC5	NM_032206	exon2	c.C82A	p.L28M	GAATGGCTGAACG	.	55.0	14.0	73.0	0.0	.	159
NPAT	4863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108064705	108064714	+	Frame_Shift_Del	DEL	ACTCATTTAA	ACTCATTTAA	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	ACTCATTTAA	ACTCATTTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NPAT	NM_002519	exon3	c.187_196del	p.63_66del	CTACATACTCATT	.	201.0	55.0	275.0	0.0	.	117
NPVF	64111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	25267920	25267920	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NPVF	NM_022150	exon2	c.138+1G>A	.	AACTTACCTCAGA	.	245.0	63.0	154.0	0.0	.	91
NRD1	4898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52272522	52272522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NRD1	NM_002525	exon20	c.A2258G	p.N753S	GGAGTATTCACAA	.	205.0	80.0	288.0	0.0	.	90
NUDT10	170685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	51075989	51075989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NUDT10	NM_153183	exon2	c.C172A	p.P58T	GAGGAGCCGGGCG	.	48.0	37.0	51.0	0.0	.	90
NUP133	55746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229636533	229636533	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NUP133	NM_018230	exon4	c.T483C	p.S161S	GGGAGAAGAGTAA	.	102.0	22.0	41.0	0.0	.	271
NXF3	56000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102332620	102332620	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NXF3	NM_022052	exon18	c.C1506G	p.T502T	ACTCTGGGTCCCT	.	38.0	30.0	62.0	0.0	.	205
ODF2L	57489	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86814445	86814445	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ODF2L	NM_001184765	exon17	c.A1851C	p.T617T	AAACATTGTTACA	.	172.0	70.0	215.0	1.0	.	69
OR5T2	219464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	56000436	56000441	+	In_Frame_Del	DEL	AGAGGT	AGAGGT	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	AGAGGT	AGAGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR5T2	NM_001004746	exon1	c.221_226del	p.74_76del	GAGTGAAGAGGTA	.	75.0	19.0	126.0	0.0	.	70
OR5T3	390154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56019970	56019970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR5T3	NM_001004747	exon1	c.T295A	p.L99M	TCATTCTTGGATG	.	155.0	61.0	284.0	0.0	.	68
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158669566	158669566	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR6K2	NM_001005279	exon1	c.C877T	p.L293L	TCCTCAGGCTATA	.	232.0	157.0	194.0	0.0	.	69
OR9Q1	219956	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57947370	57947370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR9Q1	NM_001005212	exon3	c.G454T	p.G152C	GTTGCTGGTCTCA	.	150.0	58.0	225.0	1.0	.	69
OXSM	54995	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25833480	25833480	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OXSM	NM_017897	exon2	c.T969A	p.G323G	AGAAGGTGCCTTA	.	17.0	6.0	23.0	0.0	.	132
PALB2	79728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23646316	23646316	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PALB2	NM_024675	exon4	c.A1551G	p.K517K	GGCTGATTTTCTT	.	133.0	58.0	153.0	0.0	.	1351
PARP12	64761	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139756829	139756829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PARP12	NM_022750	exon3	c.A587G	p.K196R	GATCTCTTACAGC	.	63.0	20.0	78.0	1.0	.	525
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	164789392	164789392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PBX1	NM_001204963	exon7	c.G1081A	p.A361T	CAAGGGGCCCAGG	.	160.0	25.0	153.0	0.0	.	659
PCCB	5096	ucsc.edu;bcgsc.ca	37	3	135969390	135969390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCCB	NM_001178014	exon1	c.A173G	p.Q58R	ACGCGCAGCACAA	.	29.0	4.0	46.0	0.0	.	90
PCDHA13	56136	broad.mit.edu;ucsc.edu	37	5	140263243	140263243	+	Missense_Mutation	SNP	G	G	A	rs139987047		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCDHA13	NM_031865	exon1	c.G1390A	p.V464M	GTGTTCGTGAAGG	.	32.0	5.0	42.0	0.0	G|1.000;A|0.000	75
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140187339	140187339	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCDHA4	NM_031500	exon1	c.A567G	p.V189V	GCTGGTAAAAGGT	.	191.0	49.0	171.0	0.0	.	96
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140724102	140724102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCDHGA3	NM_032011	exon1	c.C502A	p.Q168K	TCCCTGCAGAACT	.	149.0	34.0	113.0	0.0	.	68
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41957413	41957413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PDZRN4	NM_001164595	exon8	c.A1429G	p.K477E	GAGTGTAAGAGAA	.	98.0	66.0	93.0	0.0	.	296
PLA2R1	22925	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160833798	160833798	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PLA2R1	NM_001195641	exon15	c.A2398C	p.R800R	TACCTCTTGGGAT	.	170.0	42.0	136.0	1.0	.	93
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8698371	8698371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PLCB1	NM_015192	exon14	c.A1389T	p.K463N	AATTTTGGTGAAA	.	47.0	17.0	71.0	0.0	.	297
PPL	5493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4935181	4935181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PPL	NM_002705	exon22	c.T3475C	p.W1159R	AGGCCCATATCTT	.	68.0	25.0	117.0	0.0	.	95
PRDM15	63977	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43241421	43241421	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PRDM15	NM_001040424	exon17	c.2171+2T>G	.	GGCCTCACTTCTG	.	29.0	10.0	74.0	2.0	.	90
PRDM5	11107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	121737607	121737607	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PRDM5	NM_018699	exon8	c.865+1G>T	.	TCCTCACCAGTGT	.	85.0	36.0	116.0	0.0	.	91
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76063257	76063257	+	Missense_Mutation	SNP	T	T	C	rs148924079		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PRKRIR	NM_004705	exon5	c.A937G	p.M313V	TTATCATAGTGTG	.	347.0	129.0	425.0	0.0	T|1.000;C|0.000	93
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7906552	7906552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PTPRM	NM_001105244	exon4	c.A518C	p.D173A	CTATCGATGAGGT	.	170.0	57.0	202.0	0.0	.	228
RASA1	5921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	86685321	86685321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RASA1	NM_002890	exon24	c.A3037G	p.S1013G	ACGCTCAGTAATG	.	115.0	31.0	101.0	0.0	.	661
RAVER2	55225	broad.mit.edu;bcgsc.ca	37	1	65280433	65280433	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RAVER2	NM_018211	exon11	c.C1800T	p.S600S	AAGCAGCATTCTG	.	49.0	15.0	58.0	1.0	.	135
RBM39	9584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34312495	34312495	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RBM39	NM_184234	exon8	c.A684G	p.S228S	TACCTGTGATGCC	.	119.0	71.0	94.0	0.0	.	91
RECQL4	9401	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	145738331	145738331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RECQL4	NM_004260	exon16	c.T2654C	p.L885P	TGGCTAAGCTGCT	.	140.0	30.0	92.0	1.0	.	1083
REPS2	9185	broad.mit.edu;bcgsc.ca	37	X	17156984	17156984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	REPS2	NM_004726	exon17	c.C1814T	p.S605F	GGCAGTCTTCCAA	.	75.0	4.0	114.0	0.0	.	131
RNF175	285533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154649420	154649420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RNF175	NM_173662	exon4	c.G340A	p.V114I	TAATAACGGAGAA	.	62.0	31.0	82.0	0.0	.	47
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113304627	113304627	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RPH3A	NM_001143854	exon7	c.C426G	p.I142M	CAAAATCTGCATT	.	60.0	12.0	60.0	0.0	.	519
SCARB1	949	ucsc.edu;bcgsc.ca	37	12	125271992	125271992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SCARB1	NM_005505	exon10	c.A1214G	p.K405R	TCAATCTTCCCAG	.	45.0	4.0	39.0	0.0	.	226
SENP6	26054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	76376479	76376480	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SENP6	NM_015571	exon10	c.1046_1047insTT	p.E349fs	GAAGAGAAAGCAT	.	43.0	18.0	70.0	0.0	.	660
SLC26A1	10861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	982779	982779	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC26A1	NM_022042	exon3	c.A1948C	p.S650R	GCGGGCTGCAGCA	.	45.0	16.0	46.0	0.0	.	91
SLC29A2	3177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66135010	66135010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC29A2	NM_001532	exon7	c.C658T	p.R220C	AGTAGCGGGCAAA	.	84.0	30.0	97.0	0.0	.	91
SLC30A8	169026	ucsc.edu;bcgsc.ca;mdanderson.org	37	8	118169990	118169990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC30A8	NM_173851	exon4	c.A479G	p.Y160C	TAGTGTACCTGGC	.	319.0	58.0	245.0	2.0	.	229
SLC39A12	221074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18250660	18250660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC39A12	NM_152725	exon3	c.A412G	p.K138E	AGTAATAAAGAGT	.	138.0	60.0	175.0	1.0	.	154
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162799343	162799343	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC4A10	NM_001178015	exon16	c.T2039G	p.L680W	GCACATTGAAGGA	.	61.0	23.0	34.0	0.0	.	229
STARD13	90627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33681023	33681023	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	STARD13	NM_178006	exon13	c.C3096G	p.L1032L	CACGGAGAGGGAC	.	60.0	15.0	99.0	0.0	.	94
STX16	8675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57251326	57251326	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	STX16	NM_001001433	exon9	c.C957T	p.L319L	TGTCCTCGTTGGC	.	202.0	54.0	195.0	0.0	.	91
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	8006438	8006438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TAF3	NM_031923	exon3	c.A965G	p.K322R	GTCCCAAGAGCCC	.	42.0	18.0	47.0	0.0	.	69
TAS2R38	5726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141672569	141672569	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TAS2R38	NM_176817	exon1	c.T921A	p.A307A	CATCACAGCTCTC	.	67.0	23.0	98.0	0.0	.	92
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167420042	167420042	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001122679	exon5	c.C1041G	p.P347P	CACGCCCCCGCCC	.	122.0	52.0	128.0	0.0	.	.
TLE3	7090	broad.mit.edu;bcgsc.ca	37	15	70343755	70343755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TLE3	NM_005078	exon19	c.C2186T	p.T729M	TAAGGCGTCCTCC	.	60.0	4.0	93.0	0.0	.	522
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7578525	7578525	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	TP53,NS,carcinoma,-1	TP53	NM_000546	exon5	c.C405A	p.C135X	CAGTTGGCAAAAC	.	22.0	16.0	38.0	0.0	.	70225
TPPP3	51673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67424967	67424967	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TPPP3	NM_016140	exon3	c.G48A	p.K16K	GGCAAACTTGCGG	.	57.0	13.0	68.0	0.0	.	90
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179560596	179560596	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TTN	NM_001267550	exon114	c.T31203C	p.Y10401Y	ACCTTCATAGACC	.	338.0	77.0	253.0	0.0	.	636
TUBA3C	7278	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	19748160	19748160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TUBA3C	NM_006001	exon5	c.A1196G	p.Y399C	TTGGCATACATGA	.	108.0	34.0	94.0	1.0	.	95
USP35	57558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77920573	77920573	+	Missense_Mutation	SNP	C	C	A	rs202205531	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	USP35	NM_020798	exon10	c.C1672A	p.P558T	GAGGAGCCCCCGG	.	93.0	38.0	96.0	0.0	C|0.999;T|0.001	637
USP5	8078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6973284	6973284	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	USP5	NM_001098536	exon17	c.T2169G	p.P723P	CCCCCCTCCTGAG	.	21.0	14.0	73.0	0.0	.	659
WASF2	10163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27734780	27734780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	WASF2	NM_006990	exon9	c.A1400G	p.N467S	ACGTCATTGCCCA	.	88.0	35.0	119.0	0.0	.	228
WDFY2	115825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	52301872	52301872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	WDFY2	NM_052950	exon6	c.C544A	p.L182I	ACAATCCTCAAAC	.	62.0	14.0	64.0	0.0	.	90
YWHAE	7531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1264424	1264424	+	Missense_Mutation	SNP	G	G	T	rs148760302	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	YWHAE	NM_006761	exon4	c.C540A	p.F180L	GTAGTAGAATACG	.	49.0	35.0	104.0	0.0	G|1.000;A|0.000	659
ZFP37	7539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	115805121	115805121	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZFP37	NM_003408	exon4	c.C1777T	p.R593X	GGGATCGCTGATG	.	102.0	39.0	126.0	0.0	.	92
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	123963936	123963936	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZHX2	NM_014943	exon3	c.G186A	p.E62E	GATAGAGGTGAAA	.	82.0	16.0	62.0	0.0	.	227
ZNF226	7769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44681511	44681511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001032372	exon6	c.A2096G	p.Y699C	AACCATATAAATG	.	89.0	44.0	115.0	0.0	.	.
ZNF786	136051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	148767724	148767724	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZNF786	NM_152411	exon4	c.C2140A	p.R714R	TTTCCCGGAAGTT	.	120.0	47.0	108.0	1.0	.	50
CCAR1	55749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70508892	70508893	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	TTTAAAGCTGGTT	.	48.0	24.0	34.0	0.0	.	.
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14631250	14631251	+	Missense_Mutation	DNP	GA	GA	TC	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	.	CTAACAGACCCCA	.	39.0	24.0	100.0	0.0	.	.
SENP6	26054	hgsc.bcm.edu;bcgsc.ca	37	6	76376480	76376481	+	Missense_Mutation	DNP	AA	AA	TC	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	.	.	.	p.ES349DR	AAGAGAAAGCATA	.	44.0	19.0	71.0	0.0	.	.