Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48287835	48287835	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ABCA13	NM_152701	exon14	c.1660-1G>T	.	TGTTAAGGATCGT	.	106.0	74.0	88.0	0.0	.	521
ACVR2A	92	hgsc.bcm.edu;bcgsc.ca	37	2	148684653	148684659	+	Frame_Shift_Del	DEL	TGGCAAT	TGGCAAT	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	TGGCAAT	TGGCAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ACVR2A	NM_001616	exon11	c.1352_1358del	p.451_453del	AGGGAATGGCAAT	.	71.0	13.0	116.0	0.0	.	831
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18777771	18777771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ADAMTSL1	NM_001040272	exon19	c.G3544A	p.V1182I	GAGGTGGTCACCC	.	185.0	33.0	199.0	0.0	.	230
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100235183	100235183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ADH1B	NM_000668	exon6	c.C623T	p.A208V	ATAACAGCAGATA	.	217.0	49.0	331.0	0.0	.	136
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74274521	74274524	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ALB	NM_000477	exon4	c.481_482del	p.161_161del	TTGAAAAAGTAAG	.	47.0	13.0	57.0	0.0	.	96
APBA1	320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	72131731	72131731	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	APBA1	NM_001163	exon2	c.G396A	p.Q132Q	CTCTGCCTGCTCC	.	27.0	12.0	56.0	0.0	.	91
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	73020363	73020363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ARHGEF17	NM_014786	exon1	c.C680A	p.A227D	CCGGGGCCCGGGC	.	138.0	55.0	191.0	0.0	.	227
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99022509	99022509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_001198879	exon7	c.G1793A	p.R598K	AGGCCCCTCTTTG	.	98.0	28.0	92.0	0.0	.	.
ATRX	546	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	X	76938217	76938217	+	Missense_Mutation	SNP	G	G	A	rs139131007	byfrequency;alternate_allele	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ATRX	NM_000489	exon9	c.C2531T	p.T844I	TCTTTTGTATTTG	.	14.0	5.0	12.0	0.0	G|0.999;T|0.001	248
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28846465	28846465	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ATXN2L	NM_148414	exon19	c.T2520A	p.P840P	TACCCCTCAGTAC	.	118.0	38.0	154.0	0.0	.	92
BCO2	83875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	112070431	112070431	+	Missense_Mutation	SNP	A	A	G	rs146824071	byfrequency	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	BCO2	NM_031938	exon6	c.A746G	p.Y249C	TCTCCTATAAGGT	.	62.0	26.0	64.0	0.0	A|0.998;G|0.002	68
BEND5	79656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	49208383	49208383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	BEND5	NM_024603	exon4	c.G806A	p.R269Q	GTGCTCCGTAACT	.	61.0	11.0	79.0	0.0	.	91
BHLHE40	8553	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	5025203	5025203	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	BHLHE40	NM_003670	exon5	c.C1065T	p.L355L	AGGCCTCAACGCC	.	104.0	40.0	158.0	1.0	.	91
BST1	683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15709230	15709230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	BST1	NM_004334	exon3	c.G412A	p.A138T	AGGGTTGCAGATT	.	115.0	44.0	140.0	0.0	.	90
CDC45	8318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19481906	19481906	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CDC45	NM_001178011	exon5	c.404+1G>T	.	CCGGAGGTGAGTC	.	139.0	46.0	199.0	0.0	.	227
CDH1	999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68842624	68842624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CDH1	NM_004360	exon5	c.A560G	p.K187R	AAGGCAAGGTTTT	.	54.0	23.0	76.0	0.0	.	3377
CDK3	1018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73998495	73998495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CDK3	NM_001258	exon5	c.A482G	p.H161R	ACACCCATGAGGT	.	62.0	21.0	82.0	0.0	.	521
CLDN16	10686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190126207	190126207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CLDN16	NM_006580	exon4	c.G697A	p.G233S	AAATTTGGTTGGT	.	110.0	38.0	136.0	0.0	.	227
CLTCL1	8218	hgsc.bcm.edu;broad.mit.edu	37	22	19211532	19211532	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CLTCL1	NM_001835	exon14	c.2174delC	p.P725fs	ACATCTGGGTCTT	.	176.0	11.0	267.0	0.0	.	230
CNOT10	25904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32757737	32757737	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CNOT10	NM_001256742	exon6	c.A774G	p.K258K	CAACAAAGATGGA	.	126.0	56.0	173.0	0.0	.	91
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80801440	80801440	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CTNNA2	NM_004389	exon13	c.1893+1G>T	.	ATCAGGGTATGTG	.	128.0	43.0	148.0	0.0	.	368
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	A	rs121913409	bycluster	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	CTNNB1,NS,carcinoma,+1	CTNNB1	NM_001098209	exon3	c.C134A	p.S45Y	CTCCTTCTCTGAG	.	118.0	57.0	225.0	0.0	.	24361
CTTN	2017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70269063	70269063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CTTN	NM_005231	exon12	c.G919A	p.G307S	GGATTCGGCGGGA	.	350.0	137.0	413.0	0.0	.	227
CYP39A1	51302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46620284	46620284	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	CYP39A1	NM_016593	exon1	c.G36A	p.L12L	GCAACCCAGGATT	.	125.0	36.0	97.0	0.0	.	91
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24758744	24758744	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DFNA5	NM_001127453	exon4	c.G498A	p.Q166Q	ACACTTCTGCATC	.	178.0	26.0	145.0	0.0	.	91
DHX16	8449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30627293	30627293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DHX16	NM_003587	exon12	c.A1963G	p.M655V	CCTGCATGTCAGA	.	182.0	44.0	130.0	2.0	.	228
DISP1	84976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223177045	223177045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DISP1	NM_032890	exon10	c.A2306G	p.K769R	AATACAAAAAGCT	.	198.0	114.0	181.0	0.0	.	68
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	116534805	116534805	+	Missense_Mutation	SNP	G	G	A	rs150929011		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	DPP10,NS,carcinoma,0	DPP10	NM_001178034	exon14	c.G1255A	p.V419M	ATTACCGTGCGGC	.	185.0	10.0	205.0	0.0	G|1.000;A|0.000	142
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41416175	41416175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DSCAM	NM_001271534	exon31	c.C5213A	p.A1738D	GGCCCAGCCTTGG	.	113.0	45.0	141.0	0.0	.	101
DUS3L	56931	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5789643	5789643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	DUS3L	NM_020175	exon3	c.G475T	p.G159C	GGGGGCCCAGGTC	.	111.0	60.0	110.0	1.0	.	90
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233345176	233345176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ECEL1	NM_004826	exon17	c.A2161G	p.I721V	GCTTGATGCACCA	.	112.0	47.0	138.0	0.0	.	90
ELAC1	55520	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48510804	48510804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ELAC1	NM_018696	exon3	c.C496A	p.L166I	TCATACCTTCTGT	.	95.0	48.0	152.0	1.0	.	90
FAT4	79633	hgsc.bcm.edu;broad.mit.edu	37	4	126372517	126372517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FAT4	NM_024582	exon9	c.A10346T	p.E3449V	GGAATGAAAATGG	.	93.0	4.0	134.0	0.0	.	108
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126400895	126400895	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FAT4	NM_024582	exon14	c.12474-1G>A	.	ATTTTAGATGCCC	.	43.0	14.0	58.0	0.0	.	108
FBN3	84467	broad.mit.edu;bcgsc.ca	37	19	8138130	8138130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FBN3	NM_032447	exon61	c.G7754A	p.R2585H	GTGTTGCGACAGG	.	282.0	19.0	455.0	2.0	.	100
FER1L5	90342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	97360146	97360146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FER1L5	NM_001113382	exon33	c.G3767A	p.G1256E	AGAATGGGGCATA	.	83.0	28.0	103.0	0.0	.	23
FGD3	89846	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	95738644	95738644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FGD3	NM_001083536	exon3	c.C106T	p.P36S	GCGCTCCCTGTTG	.	117.0	40.0	163.0	1.0	.	228
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39264849	39264849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	FREM2	NM_207361	exon1	c.G3368A	p.G1123D	CACCAGGCTCTGA	.	51.0	6.0	64.0	0.0	.	100
GAS2L2	246176	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	34079749	34079749	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GAS2L2	NM_139285	exon1	c.T121A	p.W41R	GAAGCCACTCAGC	.	183.0	15.0	215.0	1.0	.	227
GCAT	23464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38212648	38212648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GCAT	NM_001171690	exon9	c.G1261A	p.V421M	TCAGCAGTGCATA	.	126.0	44.0	127.0	0.0	.	90
GNL3L	54552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54566597	54566597	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GNL3L	NM_001184819	exon4	c.C111A	p.T37T	AGCAACCTCCAAA	.	288.0	99.0	342.0	0.0	.	131
GPR1	2825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207040977	207040977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GPR1	NM_001098199	exon3	c.G995A	p.C332Y	CCAGAACAGCTGA	.	110.0	45.0	123.0	0.0	.	90
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	14548392	14548392	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	GRIP2	.	.	.	.	GAGAAGCGGGCTG	.	153.0	70.0	198.0	1.0	.	69
HFE2	148738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145416462	145416462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	HFE2	NM_213653	exon4	c.C807A	p.N269K	TGCTAACCCTGGG	.	132.0	38.0	148.0	0.0	.	91
HIRIP3	8479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30005727	30005728	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	HIRIP3	NM_003609	exon4	c.739_740insA	p.E247fs	CTTTCTCTTCCTC	.	54.0	21.0	70.0	0.0	.	90
IPO13	9670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44415602	44415602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	IPO13	NM_014652	exon2	c.G598A	p.A200T	TGTGGGGCTGTCT	.	51.0	21.0	58.0	0.0	.	226
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137734001	137734001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	KDM3B	NM_016604	exon10	c.A2966G	p.Y989C	CAAAATACATCCT	.	228.0	76.0	204.0	0.0	.	542
KIAA0947	23379	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	5463008	5463008	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	KIAA0947	NM_015325	exon13	c.T3561A	p.Y1187X	GGATTATAGTTCA	.	109.0	30.0	123.0	1.0	.	48
KRT39	390792	broad.mit.edu;mdanderson.org	37	17	39116562	39116562	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_213656	exon6	c.C1188T	p.Y396Y	GCTGCGGTATGTG	.	34.0	12.0	51.0	0.0	.	.
L1CAM	3897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153135689	153135689	+	Silent	SNP	C	C	A	rs201381558	alternate_allele	TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	L1CAM	NM_000425	exon8	c.G813T	p.T271T	GGTGGGCGTGGGA	.	105.0	29.0	133.0	0.0	.	138
LDHAL6B	92483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59499173	59499173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	LDHAL6B	NM_033195	exon1	c.C34A	p.Q12K	GCCAGCCAGAGAG	.	104.0	38.0	121.0	0.0	.	226
LRR1	122769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50074175	50074175	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	LRR1	NM_152329	exon3	c.T340A	p.C114S	AGAGGCTGTAATG	.	63.0	17.0	64.0	0.0	.	227
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39920643	39920643	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MACF1	NM_012090	exon86	c.T14772A	p.A4924A	GGTGGCTAATGCT	.	92.0	6.0	135.0	0.0	.	165
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149671633	149671633	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MAMLD1	NM_005491	exon5	c.G2130C	p.G710G	CCTGGGGAGTGAG	.	355.0	130.0	412.0	0.0	.	130
MAPT	4137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	44060964	44060964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MAPT	NM_001123066	exon6	c.T794A	p.I265N	GTGCCATCCCCCT	.	77.0	26.0	94.0	0.0	.	91
MDH1	4190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	63832431	63832431	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MDH1	NM_001199111	exon7	c.C747T	p.G249G	GCGTGGCGCTGCT	.	119.0	50.0	123.0	0.0	.	537
METTL21C	196541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103343267	103343267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	METTL21C	NM_001010977	exon2	c.C178A	p.P60T	CTGTAGGAACAAA	.	119.0	51.0	192.0	0.0	.	90
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	41988802	41988802	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MGA	NM_001080541	exon3	c.A1594T	p.K532X	CTTAGAAAACATT	.	79.0	8.0	65.0	0.0	.	522
MLLT6	4302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	36876674	36876674	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MLLT6	NM_005937	exon15	c.G2205A	p.R735R	CCAGCGGCTGCAA	.	112.0	41.0	109.0	0.0	.	659
MUSK	4593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113509934	113509934	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MUSK	NM_001166280	exon8	c.C797G	p.S266C	CTGGGTCCATTCA	.	85.0	32.0	84.0	0.0	.	1379
MYH11	4629	broad.mit.edu;bcgsc.ca	37	16	15853534	15853534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	MYH11	NM_001040114	exon13	c.C1321T	p.R441C	TCCAGCGGAAAAG	.	182.0	8.0	201.0	1.0	.	666
NR1H2	7376	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	50881836	50881836	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	NR1H2	NM_007121	exon6	c.C530A	p.S177X	AGGAGTCACAGTC	.	65.0	27.0	91.0	0.0	.	186
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	88423567	88423567	+	Silent	SNP	G	G	A	rs79813886		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	NTRK3	NM_001012338	exon19	c.C2268T	p.F756F	CACCCCGAAGCTC	.	77.0	37.0	120.0	0.0	G|0.999;A|0.001	3538
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228526698	228526698	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OBSCN	NM_001271223	exon80	c.T20100C	p.N6700N	CCGCAATGTGCGG	.	278.0	86.0	259.0	0.0	.	403
OR1F1	4992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3254987	3254987	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OR1F1	NM_012360	exon1	c.G741A	p.V247V	GGCTGTGGTTCTC	.	155.0	44.0	217.0	0.0	.	68
OR2T6	254879	ucsc.edu;bcgsc.ca	37	1	248551236	248551236	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OR2T6	NM_001005471	exon1	c.G327T	p.G109G	TATGGGGGCTGAA	.	154.0	53.0	114.0	2.0	.	71
OR5M8	219484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56258001	56258001	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	OR5M8	NM_001005282	exon1	c.T846A	p.P282P	CAGCATAGGGATT	.	46.0	15.0	45.0	0.0	.	68
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55591092	55591092	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PCDH15	NM_001142763	exon31	c.T4200C	p.V1400V	GACCAAAACCACC	.	107.0	40.0	168.0	0.0	.	193
PIBF1	10464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	73468073	73468073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PIBF1	NM_006346	exon11	c.C1474A	p.Q492K	AAATATCAGAAAA	.	115.0	35.0	148.0	0.0	.	136
PLEKHM2	23207	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16051919	16051919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PLEKHM2	NM_015164	exon8	c.G820A	p.E274K	TTCAACGAGGAGC	.	127.0	49.0	158.0	1.0	.	23
POC5	134359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74981292	74981292	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	POC5	NM_001099271	exon10	c.A1147C	p.N383H	TTTTATTATTTGT	.	87.0	50.0	67.0	0.0	.	45
PPAP2A	8611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	54763977	54763977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PPAP2A	NM_176895	exon3	c.A214G	p.I72V	GAATAATCTGAAA	.	77.0	21.0	62.0	0.0	.	92
PPP2R5D	5528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42957352	42957352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PPP2R5D	NM_180976	exon2	c.C31T	p.P11S	CAGGAGCCCCCCA	.	69.0	20.0	87.0	0.0	.	1082
PTCH1	5727	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	98231224	98231224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	PTCH1	NM_000264	exon14	c.G2059T	p.V687L	GCTGCACAGAGAT	.	138.0	48.0	158.0	1.0	.	3532
RASGRP4	115727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38912649	38912649	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RASGRP4	NM_001146206	exon2	c.C168T	p.C56C	TTCGCTGCAGCCG	.	81.0	34.0	81.0	0.0	.	660
RBP4	5950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	95360550	95360550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RBP4	NM_006744	exon3	c.C122T	p.T41I	TACCAGGTCCCAG	.	208.0	32.0	311.0	0.0	.	90
RGS20	8601	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	54792096	54792096	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RGS20	NM_170587	exon2	c.G444A	p.R148R	GCTGAGGCCCCCC	.	142.0	81.0	131.0	0.0	.	227
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55540553	55540553	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RP1	NM_006269	exon4	c.G4111C	p.D1371H	CAGAAAGATCTAA	.	63.0	35.0	67.0	0.0	.	102
RSPO1	284654	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38082337	38082337	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RSPO1	NM_001242910	exon4	c.G105A	p.E35E	GCTCCCCTCGGCA	.	199.0	80.0	268.0	2.0	.	22
RTKN2	219790	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64022532	64022532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	RTKN2	NM_145307	exon2	c.G109A	p.G37R	ATATTCCTTCTCG	.	44.0	21.0	78.0	1.0	.	68
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4153733	4153733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SDK1	NM_152744	exon25	c.G3650A	p.R1217H	ACTGGCGCTCAGA	.	188.0	42.0	165.0	0.0	.	138
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146275926	146275926	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SHPRH	NM_173082	exon2	c.A533T	p.E178V	GATGACTCCACCA	.	35.0	26.0	50.0	0.0	.	92
SIAH1	6477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	48396330	48396330	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SIAH1	NM_001006610	exon2	c.C103T	p.Q35X	CAGTCTGACGGCT	.	186.0	71.0	237.0	0.0	.	415
SNX8	29886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2294745	2294745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SNX8	NM_013321	exon11	c.C1344G	p.H448Q	GGTGCTGTGTGGT	.	189.0	34.0	152.0	0.0	.	290
SOX10	6663	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	38369604	38369604	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SOX10	NM_006941	exon4	c.G1299A	p.R433R	GAGGGGCCGCTGC	.	38.0	14.0	40.0	0.0	.	650
SPATA16	83893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172643141	172643141	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SPATA16	NM_031955	exon7	c.T1223A	p.F408Y	CCTGTGAATATCG	.	93.0	33.0	103.0	0.0	.	94
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65252575	65252575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	SPTB	NM_001024858	exon16	c.A3656G	p.N1219S	CGGTTGTTCTCCA	.	55.0	25.0	67.0	0.0	.	100
STAB2	55576	broad.mit.edu;mdanderson.org	37	12	104136328	104136328	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	STAB2	NM_017564	exon56	c.T6027A	p.C2009X	TGATTGTCTGCGT	.	195.0	13.0	249.0	1.0	.	104
STEAP4	79689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87912273	87912273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	STEAP4	NM_001205315	exon4	c.G667A	p.V223I	AGATTACGTCTCT	.	131.0	63.0	104.0	0.0	.	90
TMEM203	94107	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	140099480	140099491	+	In_Frame_Del	DEL	CATGAGCAGCTG	CATGAGCAGCTG	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	CATGAGCAGCTG	CATGAGCAGCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	TMEM203	NM_053045	exon1	c.376_387del	p.126_129del	GCGGATCATGAGC	.	61.0	16.0	104.0	0.0	.	22
TMEM247	388946	hgsc.bcm.edu;bcgsc.ca	37	2	46707887	46707887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_001145051	exon2	c.A461C	p.E154A	AGCAAGAGGCGGC	.	121.0	9.0	173.0	0.0	.	.
TMPRSS11E	28983	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69343131	69343131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	TMPRSS11E	NM_014058	exon8	c.T752C	p.I251T	TAACAATAAAACC	.	179.0	80.0	187.0	1.0	.	70
TSSC1	7260	broad.mit.edu;bcgsc.ca	37	2	3217959	3217959	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	TSSC1	NM_003310	exon5	c.C477T	p.I159I	CAGCAGGATATGG	.	108.0	43.0	99.0	2.0	.	90
UBXN1	51035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62445539	62445539	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	UBXN1	NM_015853	exon5	c.342delA	p.E114fs	CTCCCGTTCCTCT	.	66.0	28.0	92.0	0.0	.	90
VSX2	338917	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	74706315	74706315	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	VSX2	NM_182894	exon1	c.G51A	p.V17V	GACAGTGGCCAAG	.	76.0	8.0	101.0	1.0	.	69
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112926896	112926896	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	YTHDC2	NM_022828	exon27	c.C3984T	p.S1328S	AAGCAGCATAGTT	.	147.0	38.0	158.0	0.0	.	92
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100344318	100344318	+	RNA	SNP	A	A	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	ZAN	.	.	.	.	TGCTTCAGTCTTG	.	132.0	73.0	95.0	0.0	.	142
ZNF226	7769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44676265	44676265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NK-01A-11D-A28X-10	TCGA-DD-A4NK-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85d5f17f-7a02-4e34-aeb5-0a41708f9af4	fecea418-1023-458d-aac6-ce383901f30a	.	.	NM_015919	exon4	c.G40T	p.A14S	GACGTGGCTGTGG	.	130.0	52.0	172.0	0.0	.	.