Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABTB2	25841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34189528	34189528	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ABTB2	NM_145804	exon6	c.A1575C	p.P525P	CATCAGTGGCGTC	.	121.0	18.0	84.0	0.0	.	91
ACY3	91703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67413176	67413176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ACY3	NM_080658	exon4	c.G419A	p.C140Y	TGGCGGCACAGGT	.	180.0	88.0	112.0	1.0	.	90
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	73681090	73681090	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ALMS1	NM_015120	exon8	c.T7433A	p.L2478Q	ATTCACTGGCTGC	.	195.0	10.0	125.0	0.0	.	142
ALPK3	57538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85400702	85400702	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ALPK3	NM_020778	exon6	c.A3339C	p.T1113T	CCCAACACTGCAC	.	100.0	53.0	89.0	1.0	.	337
AMER3	205147	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	131522049	131522049	+	Missense_Mutation	SNP	C	C	T	rs140869723		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	.	NM_152698	exon2	c.C2404T	p.R802W	GCTGCCCGGTGGA	.	120.0	27.0	100.0	1.0	C|1.000;T|0.000	.
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157522055	157522055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ARID1B	NM_020732	exon18	c.A4327G	p.I1443V	CACGGAATCCCGC	.	216.0	90.0	179.0	0.0	.	154
ATP2B4	493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	203702358	203702358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ATP2B4	NM_001001396	exon21	c.T3317C	p.V1106A	TCGACGTAATTAA	.	140.0	23.0	70.0	0.0	.	517
BAZ1A	11177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35255190	35255190	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	BAZ1A	NM_013448	exon14	c.T1624C	p.L542L	GATCCAAACTTTT	.	16.0	4.0	30.0	0.0	.	291
BMX	660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	15560134	15560134	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	BMX	NM_001721	exon15	c.T1424A	p.F475Y	TTAAATTCTATGG	.	124.0	93.0	98.0	0.0	.	541
BPIFB2	80341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31600638	31600638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	.	NM_025227	exon4	c.G233A	p.R78H	TGCCCCGCCTCCA	.	280.0	36.0	126.0	0.0	.	.
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	26881251	26881251	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	CDH9	NM_016279	exon12	c.A2364C	p.R788R	TTAGTCTCGGTCA	.	152.0	56.0	89.0	0.0	.	99
CELF6	60677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	72582280	72582280	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	CELF6	NM_001172684	exon5	c.G603A	p.A201A	CCTCACCGCCATG	.	91.0	5.0	78.0	0.0	.	154
CLHC1	130162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	55402927	55402927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	.	NM_152385	exon13	c.A1760G	p.X587W	TAGAACTACCAAA	.	136.0	58.0	105.0	0.0	.	.
CLN5	1203	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	77566254	77566254	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	CLN5	NM_006493	exon1	c.G168C	p.T56T	AGACACGGCACAG	.	32.0	5.0	25.0	0.0	.	91
CRY1	1407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	107393336	107393336	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	CRY1	NM_004075	exon7	c.G1130C	p.G377A	TTCATTCCTTCTT	.	80.0	29.0	93.0	0.0	.	93
CYSLTR1	10800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	77528826	77528827	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	CYSLTR1	NM_006639	exon3	c.418_419insA	p.A140fs	ACCTGGCTTTTTT	.	62.0	41.0	71.0	0.0	.	131
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	225653873	225653873	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	DOCK10	NM_014689	exon48	c.G5326T	p.G1776X	GCCATCCCATAGA	.	110.0	54.0	86.0	0.0	.	92
DRAXIN	374946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11771928	11771928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	.	NM_198545	exon4	c.C663A	p.D221E	GTCTGACGGGGAG	.	126.0	19.0	109.0	0.0	.	.
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108373044	108373044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	DZIP3	NM_014648	exon19	c.C2086T	p.H696Y	AATCCACACTCAG	.	149.0	43.0	143.0	0.0	.	91
ERBB2IP	55914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	65349290	65349290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ERBB2IP	NM_001253699	exon21	c.C2144T	p.S715L	ACAGTTCAACAGA	.	104.0	36.0	96.0	1.0	.	653
ESRP1	54845	broad.mit.edu;bcgsc.ca	37	8	95680361	95680361	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ESRP1	NM_001122827	exon10	c.C1116T	p.D372D	AGGGGACGCTTTT	.	227.0	132.0	95.0	2.0	.	94
FASN	2194	broad.mit.edu;bcgsc.ca	37	17	80040554	80040554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	FASN	NM_004104	exon34	c.G5768A	p.G1923D	TGGTAGCCTGCGG	.	127.0	62.0	73.0	2.0	.	90
FHAD1	114827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15639652	15639652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	FHAD1	NM_052929	exon8	c.A1139G	p.K380R	AGGACAAGGACCA	.	396.0	56.0	344.0	0.0	.	69
FLT4	2324	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180048556	180048556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	FLT4	NM_182925	exon13	c.A2006G	p.Y669C	GACAGGTACTTCT	.	180.0	61.0	105.0	1.0	.	1490
GFOD2	81577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67709857	67709857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	GFOD2	NM_030819	exon3	c.T359C	p.V120A	TTCCCTACCAGGC	.	146.0	45.0	128.0	0.0	.	93
GSR	2936	hgsc.bcm.edu;bcgsc.ca	37	8	30538494	30538494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	GSR	NM_000637	exon12	c.C1346A	p.P449Q	TACATCGGGGTAA	.	82.0	4.0	81.0	0.0	.	94
GZMA	3001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54401400	54401400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	GZMA	NM_006144	exon2	c.G169A	p.A57T	GCTGGGGCTTTGA	.	45.0	21.0	51.0	0.0	.	94
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112601506	112601506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	.	NM_001109662	exon74	c.G12335A	p.R4112Q	AGGCTCCGGATGG	.	64.0	22.0	70.0	0.0	.	.
HIPK2	28996	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139416619	139416619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	HIPK2	NM_022740	exon2	c.C215T	p.P72L	GGGACCGGCAAGG	.	394.0	86.0	262.0	1.0	.	785
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3123007	3123007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	HTT	NM_002111	exon9	c.C1121A	p.T374N	TTGTGACCGGAGC	.	115.0	45.0	85.0	0.0	.	281
KIAA0947	23379	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5461240	5461240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	KIAA0947	NM_015325	exon13	c.A1793G	p.D598G	AAGAAGATACTCA	.	101.0	28.0	81.0	1.0	.	48
KIAA1328	57536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	34647263	34647263	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	KIAA1328	NM_020776	exon7	c.G987C	p.K329N	TCCTAAGACACAT	.	229.0	18.0	196.0	0.0	.	90
KRT79	338785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53216820	53216820	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	KRT79	NM_175834	exon7	c.T1347C	p.L449L	CTCCAGAAGCTTG	.	65.0	18.0	60.0	0.0	.	72
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	60893664	60893664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	LAMA5	NM_005560	exon53	c.A7085C	p.E2362A	TGGTTCTCCTCCC	.	251.0	27.0	129.0	0.0	.	93
LPA	4018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	161016508	161016508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	LPA	NM_005577	exon22	c.C3347A	p.T1116N	TCCATGGTGTAAC	.	143.0	29.0	84.0	0.0	.	74
LRIG1	26018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	66465346	66465346	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	LRIG1	NM_015541	exon5	c.A645G	p.Q215Q	TCACAGTTGTGTC	.	114.0	32.0	73.0	0.0	.	230
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46921839	46921839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	LRP4	NM_002334	exon3	c.A290T	p.E97V	TCATCCTCACAGT	.	190.0	74.0	120.0	0.0	.	94
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60064481	60064481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	MED13	NM_005121	exon12	c.C2272T	p.R758C	TAGGGCGTGGAGC	.	189.0	57.0	134.0	0.0	.	136
MYRF	745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61547742	61547742	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	.	NM_001127392	exon18	c.G2385C	p.E795D	AGAGGAGGACCTG	.	387.0	71.0	241.0	0.0	.	.
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	178098810	178098810	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	NFE2L2	NM_006164	exon2	c.G235T	p.E79X	CTGTCTCTTCATC	.	64.0	27.0	48.0	0.0	.	90
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178098809	178098809	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	NFE2L2	NM_006164	exon2	c.A236T	p.E79V	CCTGTCTCTTCAT	.	64.0	26.0	47.0	0.0	.	90
NR3C1	2908	hgsc.bcm.edu;bcgsc.ca	37	5	142779486	142779486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	NR3C1	NM_001018074	exon2	c.C919G	p.P307A	CTCCAGGAAAGCT	.	87.0	4.0	72.0	0.0	.	92
OPLAH	26873	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145106719	145106719	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	OPLAH	NM_017570	exon27	c.C3631G	p.P1211A	CGCCAGGCTCGCC	.	47.0	15.0	29.0	0.0	.	68
OR6N2	81442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158747387	158747387	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	OR6N2	NM_001005278	exon1	c.G39T	p.V13V	AAGGAACACAAAT	.	468.0	134.0	292.0	0.0	.	68
PDE12	201626	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57542702	57542702	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	PDE12	NM_177966	exon1	c.A596C	p.K199T	GGTATAAGGAAGC	.	111.0	39.0	106.0	1.0	.	22
PDE7A	5150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	66635839	66635840	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	PDE7A	NM_001242318	exon12	c.1180_1181insA	p.Y394fs	AATGATATTTTTT	.	69.0	29.0	43.0	0.0	.	90
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	209217426	209217426	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	PIKFYVE	NM_015040	exon39	c.5764delA	p.K1922fs	GGTTATAAGAACT	.	44.0	16.0	46.0	0.0	.	583
PLEKHG2	64857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39914693	39914693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	PLEKHG2	NM_022835	exon19	c.G2920A	p.D974N	TTCTCTGATCAAG	.	167.0	82.0	130.0	0.0	.	274
PTPRM	5797	broad.mit.edu;ucsc.edu	37	18	8247842	8247842	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	PTPRM	NM_002845	exon16	c.2453-1G>T	.	TTTACAGCTGTGT	.	65.0	12.0	61.0	1.0	.	228
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211486854	211486854	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	RCOR3	NM_001136223	exon12	c.T1406A	p.L469Q	CCACTCTGAACCA	.	203.0	68.0	97.0	0.0	.	91
SEC31B	25956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	102265220	102265221	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	SEC31B	NM_015490	exon10	c.1077_1078insT	p.L359fs	TGGTGGGAGAGGC	.	95.0	23.0	55.0	0.0	.	91
SESN2	83667	broad.mit.edu;ucsc.edu	37	1	28598953	28598953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	SESN2	NM_031459	exon4	c.G513T	p.W171C	GCCATGGCTCATC	.	43.0	4.0	48.0	0.0	.	230
SLC10A2	6555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103705045	103705045	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	SLC10A2	NM_000452	exon3	c.T510A	p.V170V	GAGAGAAACCAGA	.	94.0	25.0	87.0	0.0	.	94
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	220342149	220342149	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	SPEG	NM_005876	exon20	c.G4711T	p.E1571X	AAAGCAGAGTTGG	.	120.0	50.0	105.0	0.0	.	383
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11446000	11446000	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	THSD7A	NM_015204	exon21	c.T4164C	p.C1388C	GTCAGCACAGAAT	.	155.0	56.0	71.0	0.0	.	71
TIMM13	26517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2427289	2427289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	TIMM13	NM_012458	exon2	c.G154A	p.G52R	GTTTCCCTATACA	.	73.0	25.0	39.0	0.0	.	90
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63029258	63029258	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	TLN2	NM_015059	exon26	c.T3540G	p.D1180E	TGGAGATGCAGAG	.	279.0	55.0	141.0	0.0	.	573
TMEM62	80021	ucsc.edu;bcgsc.ca	37	15	43461808	43461808	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	TMEM62	NM_024956	exon11	c.G1314T	p.V438V	TTTTGTGCTGATT	.	37.0	4.0	66.0	0.0	.	136
UGT2B4	7363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	70352328	70352330	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	UGT2B4	NM_021139	exon4	c.1087_1089del	p.363_363del	CTTACCAAGAAGA	.	84.0	22.0	100.0	0.0	.	92
UNC13A	23025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17720864	17720864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	UNC13A	NM_001080421	exon41	c.C4696T	p.R1566W	ACGGCCGGAAGAT	.	199.0	73.0	118.0	0.0	.	25
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50022050	50022050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	WDFY4	NM_020945	exon31	c.G5263A	p.E1755K	CACCAGGAAGAAG	.	63.0	13.0	29.0	0.0	.	22
ZBTB18	10472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244218375	244218375	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	.	NM_205768	exon2	c.C1299A	p.T433T	GTACACCCTCAAG	.	528.0	246.0	205.0	0.0	.	.
ZNF654	55279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	88189316	88189316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ZNF654	NM_018293	exon1	c.G856A	p.A286T	CAGCTTGCCCAGC	.	70.0	19.0	74.0	0.0	.	69
ZNF827	152485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	146695657	146695657	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ZNF827	NM_178835	exon12	c.2860+1G>C	.	TGGTCACCTGTGT	.	148.0	42.0	132.0	0.0	.	22
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29440871	29440871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	ZNRF3	NM_001206998	exon5	c.G737A	p.R246H	AGCGACGCAGTCA	.	158.0	47.0	103.0	0.0	.	69
GDAP2	54834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	118455267	118455268	+	Missense_Mutation	DNP	TG	TG	AT	novel		TCGA-DD-A4NO-01A-11D-A28X-10	TCGA-DD-A4NO-10A-01D-A28X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36b12b9-c709-4e3d-acec-e6c2dfedbb5c	f388d82f-63e0-41b8-8514-839e3359602a	.	.	.	.	.	p.FN118LY	CTAGATTGAATCC	.	129.0	63.0	97.0	0.0	.	.